TCONS_00048695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048695
Unique NameTCONS_00048695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048695 ID=TCONS_00048695|Name=TCONS_00048695|organism=Clytia hemisphaerica|type=transcript|length=466bp
CTTCGAGcaccaaaacaaatttttaaaaataccgAAAATAGGATCTCCGT
CTAGCTTTTCTGTGAGGCAACTCCACATGAAATGTATATTTCGGCTGagg
gtaaatttttttgccacctGTTGGTATTTTGTATAAGTAGCCCTAGGATA
TGTATCTTGTGATTggaaaatgctattgacttgaaaattagTTAGGCATT
TATGAAAGAAGACCAGTCTGtgcaaagtaccaaatactcATGGGAAGGAA
TTTTTTCTGTTGATAGTCTCTTTAAATTGACAAATCAGCCTTCAGGAATC
AGTTGGTCaagtttacattctggtctgtaaaataccaaccagacaggtgg
ccgaaccaaaattttgtaaatcatctTCAATTACCCATATCTACCAATGG
TCAAAATATAAAGGTAATAGGacttgtcaatcttgagattttaagggGGG
CTTTAGGGTTAAGATG
Run BLAST on NCBI

transcript from alignment at scaffold_145:10932..11397

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048695 ID=TCONS_00048695|Name=TCONS_00048695|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_145:10932..11397 (Clytia hemisphaerica)
CATCTTAACCCTAAAGCCCcccttaaaatctcaagattgacaagtCCTAT
TACCTTTATATTTTGACCATTGGTAGATATGGGTAATTGAagatgattta
caaaattttggttcggccacctgtctggttggtattttacagaccagaat
gtaaacttGACCAACTGATTCCTGAAGGCTGATTTGTCAATTTAAAGAGA
CTATCAACAGAAAAAATTCCTTCCCATgagtatttggtactttgcaCAGA
CTGGTCTTCTTTCATAAATGCCTAActaattttcaagtcaatagcatttt
ccAATCACAAGATACATATCCTAGGGCTACTTATACAAAATACCAACagg
tggcaaaaaaatttaccctCAGCCGAAATATACATTTCATGTGGAGTTGC
CTCACAGAAAAGCTAGACGGAGATCCTATTTTcggtatttttaaaaattt
gttttggtgCTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030940XLOC_030940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048695-exon-scaffold_145-1491911889:10932..11397TCONS_00048695-exon-scaffold_145-1491911889:10932..11397Clytia hemisphaericaexon
TCONS_00048695-exon-scaffold_145-1510915933:10932..11397TCONS_00048695-exon-scaffold_145-1510915933:10932..11397Clytia hemisphaericaexon
TCONS_00048695-exon-scaffold_145-1575043694:10932..11397TCONS_00048695-exon-scaffold_145-1575043694:10932..11397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:10932..11397 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.576822	0.538465	0.664988	3.96192	0.744649	1.11336	0.51687	0.542011	0.465314	0.177473	0.156127	0.322389	0.0985542	0.381382	0.0783869	0.291589	0.660597	0.318653	0.321619	0	0	0.58592	0.316561	0	0.175114	0.582493	0.757152	0.202013	0	0.19234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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