TCONS_00048701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048701
Unique NameTCONS_00048701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048701 ID=TCONS_00048701|Name=TCONS_00048701|organism=Clytia hemisphaerica|type=transcript|length=266bp
NNAAATCTTGCATCAATTGCTACAAATGATTTCAACCAACCTGTAGATGC
GGATGTCTTCAAAACCTTGGTCAACCCTCTAAATCTACCAGGAATGTTTT
ACATTTACGATCCCTGTAAAGTTACTACCATTCCAAGTGATGAAGAAGGG
AATAGTAAGCATAAAAAACGTACAAAAAGTACATCCCAAACTCAGAACAA
CCATCATCCAATAAATACTGAAGCTCAGGATACAACCCTTACAGTCACAA
CCGATTCAACAACTNN
Run BLAST on NCBI

transcript from alignment at scaffold_145:44045..44310

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048701 ID=TCONS_00048701|Name=TCONS_00048701|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at scaffold_145:44045..44310 (Clytia hemisphaerica)
NNAGTTGTTGAATCGGTTGTGACTGTAAGGGTTGTATCCTGAGCTTCAGT
ATTTATTGGATGATGGTTGTTCTGAGTTTGGGATGTACTTTTTGTACGTT
TTTTATGCTTACTATTCCCTTCTTCATCACTTGGAATGGTAGTAACTTTA
CAGGGATCGTAAATGTAAAACATTCCTGGTAGATTTAGAGGGTTGACCAA
GGTTTTGAAGACATCCGCATCTACAGGTTGGTTGAAATCATTTGTAGCAA
TTGATGCAAGATTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030946XLOC_030946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048701-exon-scaffold_145-1491911889:44045..44310TCONS_00048701-exon-scaffold_145-1491911889:44045..44310Clytia hemisphaericaexon
TCONS_00048701-exon-scaffold_145-1510915933:44045..44310TCONS_00048701-exon-scaffold_145-1510915933:44045..44310Clytia hemisphaericaexon
TCONS_00048701-exon-scaffold_145-1575043694:44045..44310TCONS_00048701-exon-scaffold_145-1575043694:44045..44310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:44045..44310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.00364	7.61084	6.79763	4.65529	10.5251	7.67731	8.49049	7.94869	9.61239	5.63992	9.12374	5.99759	1.59713	4.97591	1.02272	3.65845	1.80276	3.23361	0	0.667831	3.4828	1.69879	1.37673	0	5.15667	3.45166	3.29287	1.75712	3.33179	2.03674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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