TCONS_00048707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048707
Unique NameTCONS_00048707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048707 ID=TCONS_00048707|Name=TCONS_00048707|organism=Clytia hemisphaerica|type=transcript|length=560bp
ATTTTTATGAACTTACTCGTATTATTATTTTTAGGTTTTCGATGAATAAA
GTGTTACTGTAATATTAATACTACCTACAAAAATGTACATGCATGCATTG
TAAATGTTAATTCTGTACGCTAAATTTgtaatcaaaagaaaagttttcgT
CAGCAATAAAAAAGCAGATTCATGCAAAAAGACGAGTCAAAAAACGATAA
GTTGACAACCGTACTACTCACTATCGTTCTTTACTCATTAACTAAAGATT
TTAATTGGACCTTAGCTGACCGAGAAATTTATCTTAAAGACGACAAGCTT
TCAATATCAGTTCTTTCCTTTGTCCACTTGCTAAAGTGATAATCATTTAA
TCGTTGTCGTTTTTACTATCACGTGTTTTATTGAACGCCACATTTCGACC
TAGATGCTTTATGTTATAGTCTATCCGGGAAACAATTAGAATGCCGAAAG
AGGTCTGGAAGCATTTAAAAgatgtttaaaaataaatacacaaaaataaa
ataaaatcctgttagtttgaaataaaaaatctatgaTAAGAAATATAAAC
GAAAAAATAA
Run BLAST on NCBI

transcript from alignment at scaffold_145:167938..168497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048707 ID=TCONS_00048707|Name=TCONS_00048707|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at scaffold_145:167938..168497 (Clytia hemisphaerica)
TTATTTTTTCGTTTATATTTCTTAtcatagattttttatttcaaactaac
aggattttattttatttttgtgtatttatttttaaacatcTTTTAAATGC
TTCCAGACCTCTTTCGGCATTCTAATTGTTTCCCGGATAGACTATAACAT
AAAGCATCTAGGTCGAAATGTGGCGTTCAATAAAACACGTGATAGTAAAA
ACGACAACGATTAAATGATTATCACTTTAGCAAGTGGACAAAGGAAAGAA
CTGATATTGAAAGCTTGTCGTCTTTAAGATAAATTTCTCGGTCAGCTAAG
GTCCAATTAAAATCTTTAGTTAATGAGTAAAGAACGATAGTGAGTAGTAC
GGTTGTCAACTTATCGTTTTTTGACTCGTCTTTTTGCATGAATCTGCTTT
TTTATTGCTGAcgaaaacttttcttttgattacAAATTTAGCGTACAGAA
TTAACATTTACAATGCATGCATGTACATTTTTGTAGGTAGTATTAATATT
ACAGTAACACTTTATTCATCGAAAACCTAAAAATAATAATACGAGTAAGT
TCATAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030952XLOC_030952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048707-exon-scaffold_145-1491911889:167938..168497TCONS_00048707-exon-scaffold_145-1491911889:167938..168497Clytia hemisphaericaexon
TCONS_00048707-exon-scaffold_145-1510915933:167938..168497TCONS_00048707-exon-scaffold_145-1510915933:167938..168497Clytia hemisphaericaexon
TCONS_00048707-exon-scaffold_145-1575043694:167938..168497TCONS_00048707-exon-scaffold_145-1575043694:167938..168497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:167938..168497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303229	0.0985652	0.114444	0	2.31722	1.18483	2.85889	3.77137	2.7256	2.00456	1.33125	2.15412	1.07556	0.907547	0.573944	0.800709	0.834653	0.311088	1.71914	2.02383	0.684083	1.00102	1.04303	0.842901	0	0.193705	2.35612	1.62704	2.13155	2.05741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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