TCONS_00048713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048713
Unique NameTCONS_00048713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048713 ID=TCONS_00048713|Name=TCONS_00048713|organism=Clytia hemisphaerica|type=transcript|length=3881bp
cgccatacaaatcggacggtttctacatgatttgacgataaaaatgaaaa
tttgtttttccttttttgccgattactagctcaatttttaagaataagga
gcaatactTTTACCAAtatatagcaaaagaaattcttaacgcaatgatat
taaattggttcttgtaaaactgtcagaagtcgagtaaaatcaagatgaag
ttataattttNacaaaacctttaaaacatctgaaggctttaacatttttg
gatgttctttcaaaaaacttgtGTAGTGTAATGAGGCAAACATATGGTCA
CATCGAAATTAAAGTGTcttattttgatttcaattcattaaaacaaaatt
ttaacggaagcactcggaaaaagccggattttgacttccgtgtttctatt
tttagtaacagagaggggtCATATCCCggattttttcgggtgtttccgct
agaaaaatgagtTATGCATATCAAGAATACGAATAAACTGCGTCTTCTTT
CGATAACAATACTCTCTTAGTATCGCTTCTTTCTGCAGTTTACACAGTTG
AATTTCTTACGAAAAATCGTCTTGAAGTCATGTTTGCAAAACGCGTAAAT
GTACGGCATTAATAGCGAGTTTAGTAGAAACGAAAAATCGGAGATCAAAT
TCAAAGTCGGTGTAACCAAGTCTCTGTTTCCAGTCGCGTCcgcaaaatta
atgaaaatgagTGGTACCCAACATAAAGCGTTTATTAGTACGATGACGGC
AATGACACGTGTGTGCTTAATTTCGTGTAAGAATTCTTTAGCCTGTGATA
TGACACTGTTGCGCGATTTCGTGAATCTCGAGACTACAGACGATGCAATA
GACGGGCGACGGCGAGTAGATAAGGCGTCGTCCGTATCGTCATAGAGTAA
GGGCGACATTTTGGTCGGCGTAAGGTCACCACCATCGAAGGTGTTTGTTT
GCGAGGTGCTTGAATTACTACGTTCTAATGAACGAAGCCGGAATATGGCA
CGTCTCACGCTAGCTGGAATGGGTTTCTTACGCACACGATCCGAATCGAC
CGGGCTACTCGTATTTGAGGTTTTCTCTTCCGTAAGGGTCGGCATATCCG
AAGGAGAAGAACAACGGATAGGCGTCATCCTCCCGCTTTCAAAACTAGTC
GTGTTGGAAGATGATGCAGCTTTTTGGCTACATTCACCAGGCGAAAAAGA
CGAGTTTTTTAAAATGGAGGCGGGCGAGGGCGTTGNTGCGTCcgcaaaat
tgatgaaaatgagTGGTACCCAACATAAAGCGTTTATTAGTACGATGACG
GCAATGACACGTGTGTGCTTAATTTCGTGTAAGAATTCTTTAGCCTGTGA
TATGACACTGTTGCGCGATTTCGTGAATCTCGAGACTACAGACGATGCAA
TAGACGGGCGACGGCGAGTAGATAAGGCGTCGTCCGTATCGTCATAGAGT
AAGGGCGACATTTTGGTCGGCGTAAGGTCACCACCATCGAAGGTGTTTGT
TTGCGAGGTGCTTGAATTACTACGTTCTAATGAACGAAGCCGGAATATGG
CACGTCTCACGCTAGCTGGAATGGGTTTCTTACGCACACGATCCGAATCG
ACCGGGCTACTCGTATTTGAGGTTTTCTCTTCCGTAAGGGTCGGCATATC
CGAAGGAGAAGAACAACGGATAGGCGTCATCCTCCCGCTTTCAAAACTAG
TCGTGTTGGAAGATGATGCAGCTTTTTGGCTACATTCACCAGGCGAAAAA
GACGAGTTTTTTAAAATGGAGGCGGGCGAGGGCGTTGTGGGCGACACACA
ActgtttggtgacgtcatatcaacatcactttcaaaactgaTTTCTTTGA
TCTTGCGACGTGGGGTGAAATCGGGCGTTGAGGTGGGTGTACAATTACCA
GGTGTCGAAGCAATGGAAGACTGTTCTGAGGGCGTGTCCATGTCATCATG
GTTTTGCTGCACAGGCGGTTCAAACTGGGATAGCGTTTTTGTACGCTTGA
ATATTTTCTTAGTTGCTTTGCGGTTTAAGTTGACGGGCGGTGTTAACGGA
TTAGGCCAGGATTTCCCACTCTTCATGCCCACCGTATCCATATACACTTG
GCGTttcttgaatatcttttcaaccaGCGGATTAGCAGGCATGGAGTATG
ATTTCAAGAACTTATTGCGTGAACTTTTTGGTTCGTAGGCTACGGTACGC
CATTGCCGTGGTGCATTTTTGAGACGTCGCGGATCATCTCGAGATTCTGT
TTTCTTGATAATACCACGGATTTGTTTCTTGTAGAAAGATGAACTCTTCC
GTCGTAGTAAACTGCGCGACTCAGTACTAGCGAAGGAGACTCGCGACCTC
CTGAGCCGAGTTTCAGGGCTAAGTTCAGGAGAACATGACGAGGCACTATT
GCTACTTTCGTTTTTTTGTCGAGCAGCAGATGACAAGACGTCTTTAAAAG
TTTTATCACGTCTCATTTCGATTTGTTTCAGCTCGAACACAAGATTGTGA
AAATCGAGGGAGGGTAGTGAACCACCGCGTTTATTTGTCCTACACTTTTC
AATCAAGTGTGGTCCTCTACGAAACTCGCCACCAACTATTGGTGGACAAC
CTGTCATCCCGGAATAAACCGGAGCTGAAGATTTCCTTTTTCTCTTGGAA
CCGGTAGCCAATCTTTTCATAGTTCGTGGCTGCCAATCAACCGATAATTT
ACGCGGTGAGTTTACAACCTTTGTTGCATTAGACACTTTAGCTCGTCGTC
TTGACACCGGCATGGTGGTATTGGATTCAGTCATATTAGAGTTCTCATTT
GACACCAAGACTCCGTTCAAGGTAATTGAGCAACGTCTTTCATCAGCACT
GCTATCACCTGCACCACTACCAAACATCGAATCACTTTCTTCTCCAATCG
GAGTATCGAACACCAAACCGTCTCTTTCACCAAGCTGCTCACTTTCCTCA
TTGTCAGACATAAAACCAGGGCTGTTCGCTGGTGGGAATCGATCATTTAG
GAGTGCTTTTCTTCtgggaaaacaaaaacattgtcgTGAGATTGAATCTC
GCTTTTGATGAAACTCATGGATTTGTTGAGACAGCCTAGTGGAAGCCAGG
CTTAAACGTTGTTTCCGATCGAATGCAATATGAATCAAACTGGTGCGCCA
TACTTTGTAATAGATGACGAAAAATATGACGAAAATAAGGCTTAGTACAC
ACGATAGAAAGCCTTGATacactttgaataaaatgtaaagaGATGCATGA
TCAGCTACCATGAAAGGAAATATGGTCGGGATGGTGGATAAAAACAAAGG
TATTAGCCATACTATGATTAAAGCTCTATTCACACGATAATTGGTAACCA
AGGAGTTATATTCTAAGGACCGGAAAACAGCTACGTATCTCTCATAAGTC
AGAGCAGCGATATTGAACAGCATTGAAAAGCCAAGGAAAGATGCCAAAAA
ACTACTGATTGGCATGACTTGGATAGCGTCCGCCAAAACATCATCCAACA
CCACAAAGAAGGGAACGAATAAAACACCGATTAACATCCCGGAAATGGCG
GTTGAAATTACAAGCTTATTGGTTAAAGTTCGAAGCATCTTGACTTTGTA
ATAAGCGTAACACACCATTGCGTTGCCAATGAAGATGAGTGTCCCTAACA
CAAAGAAAACGAATATAAATGAAACACTCGATTTATTGAATGCTAAAATA
GGTGCCatattgttattgttgttgttgtcattCGGATGGTTGCTATTGGT
GACAAATATGTTCGTCCTGGCAGTAACAGTAGTTGTTATGAATAAAGATG
GTAGAGCAGTTGTTGTGTTGGTATGATTGTGAAAGGTGCTAGAGTTGGAC
ATTTTTGCGAGGACGGTAGTGTTGGGTACAG
Run BLAST on NCBI

protein sequence of TCONS_00048713-protein

>TCONS_00048713-protein ID=TCONS_00048713-protein|Name=TCONS_00048713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1120bp
VPNTTVLAKMSNSSTFHNHTNTTTALPSLFITTTVTARTNIFVTNSNHPN
DNNNNNNMAPILAFNKSSVSFIFVFFVLGTLIFIGNAMVCYAYYKVKMLR
TLTNKLVISTAISGMLIGVLFVPFFVVLDDVLADAIQVMPISSFLASFLG
FSMLFNIAALTYERYVAVFRSLEYNSLVTNYRVNRALIIVWLIPLFLSTI
PTIFPFMVADHASLYILFKVYQGFLSCVLSLIFVIFFVIYYKVWRTSLIH
IAFDRKQRLSLASTRLSQQIHEFHQKRDSISRQCFCFPRRKALLNDRFPP
ANSPGFMSDNEESEQLGERDGLVFDTPIGEESDSMFGSGAGDSSADERRC
SITLNGVLVSNENSNMTESNTTMPVSRRRAKVSNATKVVNSPRKLSVDWQ
PRTMKRLATGSKRKRKSSAPVYSGMTGCPPIVGGEFRRGPHLIEKCRTNK
RGGSLPSLDFHNLVFELKQIEMRRDKTFKDVLSSAARQKNESSNSASSCS
PELSPETRLRRSRVSFASTESRSLLRRKSSSFYKKQIRGIIKKTESRDDP
RRLKNAPRQWRTVAYEPKSSRNKFLKSYSMPANPLVEKIFKKRQVYMDTV
GMKSGKSWPNPLTPPVNLNRKATKKIFKRTKTLSQFEPPVQQNHDDMDTP
SEQSSIASTPGNCTPTSTPDFTPRRKIKEISFESDVDMTSPNSCVSPTTP
SPASILKNSSFSPGECSQKAASSSNTTSFESGRMTPIRCSSPSDMPTLTE
EKTSNTSSPVDSDRVRKKPIPASVRRAIFRLRSLERSNSSTSQTNTFDGG
DLTPTKMSPLLYDDTDDALSTRRRPSIASSVVSRFTKSRNSVISQAKEFL
HEIKHTRVIAVIVLINALCWVPLIFINFADAXTPSPASILKNSSFSPGEC
SQKAASSSNTTSFESGRMTPIRCSSPSDMPTLTEEKTSNTSSPVDSDRVR
KKPIPASVRRAIFRLRSLERSNSSTSQTNTFDGGDLTPTKMSPLLYDDTD
DALSTRRRPSIASSVVSRFTKSRNSVISQAKEFLHEIKHTRVIAVIVLIN
ALCWVPLIFINFADATGNRDLVTPTLNLISDFSFLLNSLLMPYIYAFCKH
DFKTIFRKKFNCVNCRKKRY
Run BLAST on NCBI

transcript from alignment at scaffold_145:300386..304266

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048713 ID=TCONS_00048713|Name=TCONS_00048713|organism=Clytia hemisphaerica|type=transcript|length=3881bp|location=Sequence derived from alignment at scaffold_145:300386..304266 (Clytia hemisphaerica)
CTGTACCCAACACTACCGTCCTCGCAAAAATGTCCAACTCTAGCACCTTT CACAATCATACCAACACAACAACTGCTCTACCATCTTTATTCATAACAAC TACTGTTACTGCCAGGACGAACATATTTGTCACCAATAGCAACCATCCGa atgacaacaacaacaataacaatatGGCACCTATTTTAGCATTCAATAAA TCGAGTGTTTCATTTATATTCGTTTTCTTTGTGTTAGGGACACTCATCTT CATTGGCAACGCAATGGTGTGTTACGCTTATTACAAAGTCAAGATGCTTC GAACTTTAACCAATAAGCTTGTAATTTCAACCGCCATTTCCGGGATGTTA ATCGGTGTTTTATTCGTTCCCTTCTTTGTGGTGTTGGATGATGTTTTGGC GGACGCTATCCAAGTCATGCCAATCAGTAGTTTTTTGGCATCTTTCCTTG GCTTTTCAATGCTGTTCAATATCGCTGCTCTGACTTATGAGAGATACGTA GCTGTTTTCCGGTCCTTAGAATATAACTCCTTGGTTACCAATTATCGTGT GAATAGAGCTTTAATCATAGTATGGCTAATACCTTTGTTTTTATCCACCA TCCCGACCATATTTCCTTTCATGGTAGCTGATCATGCATCtctttacatt ttattcaaagtgtATCAAGGCTTTCTATCGTGTGTACTAAGCCTTATTTT CGTCATATTTTTCGTCATCTATTACAAAGTATGGCGCACCAGTTTGATTC ATATTGCATTCGATCGGAAACAACGTTTAAGCCTGGCTTCCACTAGGCTG TCTCAACAAATCCATGAGTTTCATCAAAAGCGAGATTCAATCTCAcgaca atgtttttgttttcccaGAAGAAAAGCACTCCTAAATGATCGATTCCCAC CAGCGAACAGCCCTGGTTTTATGTCTGACAATGAGGAAAGTGAGCAGCTT GGTGAAAGAGACGGTTTGGTGTTCGATACTCCGATTGGAGAAGAAAGTGA TTCGATGTTTGGTAGTGGTGCAGGTGATAGCAGTGCTGATGAAAGACGTT GCTCAATTACCTTGAACGGAGTCTTGGTGTCAAATGAGAACTCTAATATG ACTGAATCCAATACCACCATGCCGGTGTCAAGACGACGAGCTAAAGTGTC TAATGCAACAAAGGTTGTAAACTCACCGCGTAAATTATCGGTTGATTGGC AGCCACGAACTATGAAAAGATTGGCTACCGGTTCCAAGAGAAAAAGGAAA TCTTCAGCTCCGGTTTATTCCGGGATGACAGGTTGTCCACCAATAGTTGG TGGCGAGTTTCGTAGAGGACCACACTTGATTGAAAAGTGTAGGACAAATA AACGCGGTGGTTCACTACCCTCCCTCGATTTTCACAATCTTGTGTTCGAG CTGAAACAAATCGAAATGAGACGTGATAAAACTTTTAAAGACGTCTTGTC ATCTGCTGCTCGACAAAAAAACGAAAGTAGCAATAGTGCCTCGTCATGTT CTCCTGAACTTAGCCCTGAAACTCGGCTCAGGAGGTCGCGAGTCTCCTTC GCTAGTACTGAGTCGCGCAGTTTACTACGACGGAAGAGTTCATCTTTCTA CAAGAAACAAATCCGTGGTATTATCAAGAAAACAGAATCTCGAGATGATC CGCGACGTCTCAAAAATGCACCACGGCAATGGCGTACCGTAGCCTACGAA CCAAAAAGTTCACGCAATAAGTTCTTGAAATCATACTCCATGCCTGCTAA TCCGCtggttgaaaagatattcaagaaACGCCAAGTGTATATGGATACGG TGGGCATGAAGAGTGGGAAATCCTGGCCTAATCCGTTAACACCGCCCGTC AACTTAAACCGCAAAGCAACTAAGAAAATATTCAAGCGTACAAAAACGCT ATCCCAGTTTGAACCGCCTGTGCAGCAAAACCATGATGACATGGACACGC CCTCAGAACAGTCTTCCATTGCTTCGACACCTGGTAATTGTACACCCACC TCAACGCCCGATTTCACCCCACGTCGCAAGATCAAAGAAAtcagttttga aagtgatgttgatatgacgtcaccaaacagTTGTGTGTCGCCCACAACGC CCTCGCCCGCCTCCATTTTAAAAAACTCGTCTTTTTCGCCTGGTGAATGT AGCCAAAAAGCTGCATCATCTTCCAACACGACTAGTTTTGAAAGCGGGAG GATGACGCCTATCCGTTGTTCTTCTCCTTCGGATATGCCGACCCTTACGG AAGAGAAAACCTCAAATACGAGTAGCCCGGTCGATTCGGATCGTGTGCGT AAGAAACCCATTCCAGCTAGCGTGAGACGTGCCATATTCCGGCTTCGTTC ATTAGAACGTAGTAATTCAAGCACCTCGCAAACAAACACCTTCGATGGTG GTGACCTTACGCCGACCAAAATGTCGCCCTTACTCTATGACGATACGGAC GACGCCTTATCTACTCGCCGTCGCCCGTCTATTGCATCGTCTGTAGTCTC GAGATTCACGAAATCGCGCAACAGTGTCATATCACAGGCTAAAGAATTCT TACACGAAATTAAGCACACACGTGTCATTGCCGTCATCGTACTAATAAAC GCTTTATGTTGGGTACCActcattttcatcaattttgcgGACGCANCAAC GCCCTCGCCCGCCTCCATTTTAAAAAACTCGTCTTTTTCGCCTGGTGAAT GTAGCCAAAAAGCTGCATCATCTTCCAACACGACTAGTTTTGAAAGCGGG AGGATGACGCCTATCCGTTGTTCTTCTCCTTCGGATATGCCGACCCTTAC GGAAGAGAAAACCTCAAATACGAGTAGCCCGGTCGATTCGGATCGTGTGC GTAAGAAACCCATTCCAGCTAGCGTGAGACGTGCCATATTCCGGCTTCGT TCATTAGAACGTAGTAATTCAAGCACCTCGCAAACAAACACCTTCGATGG TGGTGACCTTACGCCGACCAAAATGTCGCCCTTACTCTATGACGATACGG ACGACGCCTTATCTACTCGCCGTCGCCCGTCTATTGCATCGTCTGTAGTC TCGAGATTCACGAAATCGCGCAACAGTGTCATATCACAGGCTAAAGAATT CTTACACGAAATTAAGCACACACGTGTCATTGCCGTCATCGTACTAATAA ACGCTTTATGTTGGGTACCActcattttcattaattttgcgGACGCGACT GGAAACAGAGACTTGGTTACACCGACTTTGAATTTGATCTCCGATTTTTC GTTTCTACTAAACTCGCTATTAATGCCGTACATTTACGCGTTTTGCAAAC ATGACTTCAAGACGATTTTTCGTAAGAAATTCAACTGTGTAAACTGCAGA AAGAAGCGATACTAAGAGAGTATTGTTATCGAAAGAAGACGCAGTTTATT CGTATTCTTGATATGCATAactcatttttctagcggaaacacccgaaaaa atccGGGATATGacccctctctgttactaaaaatagaaacacggaagtca aaatccggctttttccgagtgcttccgttaaaattttgttttaatgaatt gaaatcaaaataagACACTTTAATTTCGATGTGACCATATGTTTGCCTCA TTACACTACacaagttttttgaaagaacatccaaaaatgttaaagccttc agatgttttaaaggttttgtNaaaattataacttcatcttgattttactc gacttctgacagttttacaagaaccaatttaatatcattgcgttaagaat ttcttttgctatataTTGGTAAAagtattgctccttattcttaaaaattg agctagtaatcggcaaaaaaggaaaaacaaattttcatttttatcgtcaa atcatgtagaaaccgtccgatttgtatggcg

Coding sequence (CDS) from alignment at scaffold_145:300386..304266

>TCONS_00048713 ID=TCONS_00048713|Name=TCONS_00048713|organism=Clytia hemisphaerica|type=CDS|length=3363bp|location=Sequence derived from alignment at scaffold_145:300386..304266 (Clytia hemisphaerica)
GTACCCAACACTACCGTCCTCGCAAAAATGTCCAACTCTAGCACCTTTCA
CAATCATACCAACACAACAACTGCTCTACCATCTTTATTCATAACAACTA
CTGTTACTGCCAGGACGAACATATTTGTCACCAATAGCAACCATCCGaat
gacaacaacaacaataacaatatGGCACCTATTTTAGCATTCAATAAATC
GAGTGTTTCATTTATATTCGTTTTCTTTGTGTTAGGGACACTCATCTTCA
TTGGCAACGCAATGGTGTGTTACGCTTATTACAAAGTCAAGATGCTTCGA
ACTTTAACCAATAAGCTTGTAATTTCAACCGCCATTTCCGGGATGTTAAT
CGGTGTTTTATTCGTTCCCTTCTTTGTGGTGTTGGATGATGTTTTGGCGG
ACGCTATCCAAGTCATGCCAATCAGTAGTTTTTTGGCATCTTTCCTTGGC
TTTTCAATGCTGTTCAATATCGCTGCTCTGACTTATGAGAGATACGTAGC
TGTTTTCCGGTCCTTAGAATATAACTCCTTGGTTACCAATTATCGTGTGA
ATAGAGCTTTAATCATAGTATGGCTAATACCTTTGTTTTTATCCACCATC
CCGACCATATTTCCTTTCATGGTAGCTGATCATGCATCtctttacatttt
attcaaagtgtATCAAGGCTTTCTATCGTGTGTACTAAGCCTTATTTTCG
TCATATTTTTCGTCATCTATTACAAAGTATGGCGCACCAGTTTGATTCAT
ATTGCATTCGATCGGAAACAACGTTTAAGCCTGGCTTCCACTAGGCTGTC
TCAACAAATCCATGAGTTTCATCAAAAGCGAGATTCAATCTCAcgacaat
gtttttgttttcccaGAAGAAAAGCACTCCTAAATGATCGATTCCCACCA
GCGAACAGCCCTGGTTTTATGTCTGACAATGAGGAAAGTGAGCAGCTTGG
TGAAAGAGACGGTTTGGTGTTCGATACTCCGATTGGAGAAGAAAGTGATT
CGATGTTTGGTAGTGGTGCAGGTGATAGCAGTGCTGATGAAAGACGTTGC
TCAATTACCTTGAACGGAGTCTTGGTGTCAAATGAGAACTCTAATATGAC
TGAATCCAATACCACCATGCCGGTGTCAAGACGACGAGCTAAAGTGTCTA
ATGCAACAAAGGTTGTAAACTCACCGCGTAAATTATCGGTTGATTGGCAG
CCACGAACTATGAAAAGATTGGCTACCGGTTCCAAGAGAAAAAGGAAATC
TTCAGCTCCGGTTTATTCCGGGATGACAGGTTGTCCACCAATAGTTGGTG
GCGAGTTTCGTAGAGGACCACACTTGATTGAAAAGTGTAGGACAAATAAA
CGCGGTGGTTCACTACCCTCCCTCGATTTTCACAATCTTGTGTTCGAGCT
GAAACAAATCGAAATGAGACGTGATAAAACTTTTAAAGACGTCTTGTCAT
CTGCTGCTCGACAAAAAAACGAAAGTAGCAATAGTGCCTCGTCATGTTCT
CCTGAACTTAGCCCTGAAACTCGGCTCAGGAGGTCGCGAGTCTCCTTCGC
TAGTACTGAGTCGCGCAGTTTACTACGACGGAAGAGTTCATCTTTCTACA
AGAAACAAATCCGTGGTATTATCAAGAAAACAGAATCTCGAGATGATCCG
CGACGTCTCAAAAATGCACCACGGCAATGGCGTACCGTAGCCTACGAACC
AAAAAGTTCACGCAATAAGTTCTTGAAATCATACTCCATGCCTGCTAATC
CGCtggttgaaaagatattcaagaaACGCCAAGTGTATATGGATACGGTG
GGCATGAAGAGTGGGAAATCCTGGCCTAATCCGTTAACACCGCCCGTCAA
CTTAAACCGCAAAGCAACTAAGAAAATATTCAAGCGTACAAAAACGCTAT
CCCAGTTTGAACCGCCTGTGCAGCAAAACCATGATGACATGGACACGCCC
TCAGAACAGTCTTCCATTGCTTCGACACCTGGTAATTGTACACCCACCTC
AACGCCCGATTTCACCCCACGTCGCAAGATCAAAGAAAtcagttttgaaa
gtgatgttgatatgacgtcaccaaacagTTGTGTGTCGCCCACAACGCCC
TCGCCCGCCTCCATTTTAAAAAACTCGTCTTTTTCGCCTGGTGAATGTAG
CCAAAAAGCTGCATCATCTTCCAACACGACTAGTTTTGAAAGCGGGAGGA
TGACGCCTATCCGTTGTTCTTCTCCTTCGGATATGCCGACCCTTACGGAA
GAGAAAACCTCAAATACGAGTAGCCCGGTCGATTCGGATCGTGTGCGTAA
GAAACCCATTCCAGCTAGCGTGAGACGTGCCATATTCCGGCTTCGTTCAT
TAGAACGTAGTAATTCAAGCACCTCGCAAACAAACACCTTCGATGGTGGT
GACCTTACGCCGACCAAAATGTCGCCCTTACTCTATGACGATACGGACGA
CGCCTTATCTACTCGCCGTCGCCCGTCTATTGCATCGTCTGTAGTCTCGA
GATTCACGAAATCGCGCAACAGTGTCATATCACAGGCTAAAGAATTCTTA
CACGAAATTAAGCACACACGTGTCATTGCCGTCATCGTACTAATAAACGC
TTTATGTTGGGTACCActcattttcatcaattttgcgGACGCANCAACGC
CCTCGCCCGCCTCCATTTTAAAAAACTCGTCTTTTTCGCCTGGTGAATGT
AGCCAAAAAGCTGCATCATCTTCCAACACGACTAGTTTTGAAAGCGGGAG
GATGACGCCTATCCGTTGTTCTTCTCCTTCGGATATGCCGACCCTTACGG
AAGAGAAAACCTCAAATACGAGTAGCCCGGTCGATTCGGATCGTGTGCGT
AAGAAACCCATTCCAGCTAGCGTGAGACGTGCCATATTCCGGCTTCGTTC
ATTAGAACGTAGTAATTCAAGCACCTCGCAAACAAACACCTTCGATGGTG
GTGACCTTACGCCGACCAAAATGTCGCCCTTACTCTATGACGATACGGAC
GACGCCTTATCTACTCGCCGTCGCCCGTCTATTGCATCGTCTGTAGTCTC
GAGATTCACGAAATCGCGCAACAGTGTCATATCACAGGCTAAAGAATTCT
TACACGAAATTAAGCACACACGTGTCATTGCCGTCATCGTACTAATAAAC
GCTTTATGTTGGGTACCActcattttcattaattttgcgGACGCGACTGG
AAACAGAGACTTGGTTACACCGACTTTGAATTTGATCTCCGATTTTTCGT
TTCTACTAAACTCGCTATTAATGCCGTACATTTACGCGTTTTGCAAACAT
GACTTCAAGACGATTTTTCGTAAGAAATTCAACTGTGTAAACTGCAGAAA
GAAGCGATACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030958XLOC_030958Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048713-proteinTCONS_00048713-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048713-exon-scaffold_145-1491911889:300386..304266TCONS_00048713-exon-scaffold_145-1491911889:300386..304266Clytia hemisphaericaexon
TCONS_00048713-exon-scaffold_145-1510915933:300386..304266TCONS_00048713-exon-scaffold_145-1510915933:300386..304266Clytia hemisphaericaexon
TCONS_00048713-exon-scaffold_145-1575043694:300386..304266TCONS_00048713-exon-scaffold_145-1575043694:300386..304266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:300386..304266 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283932 0.158968 0.282047 0.548712 1.74938 1.79654 8.26196 8.3177 2.20644 2.12736 1.84925 1.899 0.286871 0.196388 0.198198 0.113845 0.284412 0.194916 0.206079 0.23778 0.369228 0.432701 0.113961 0.262624 0.419803 0.351365 0.451663 0.289568 0.504346 0.472271
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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