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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048714 ID=TCONS_00048714|Name=TCONS_00048714|organism=Clytia hemisphaerica|type=transcript|length=713bp
AAACAGAAAAACAAATCGGCAGCACAGAAACTGTCAAAAAATAAGCCATT
GAAAGGTGCTGATATGAAACATGAACACGATAAGAAAATCGGACATGCAA
AATCGAAGAAGGAGAAAATGAAGAAtaagaaagagaagaaagtgAAAGCG
TTGTTGAAGATGGATGAAGAGGAGGACGAAGACATGGCTCACGTTTCTTC
TTCGAAAAATCTCGATATCGAAGAAGAAAGCCCTATGCAGAAATCAACAA
CAGCAAATACAGAATCGAAAAGTATTGATGTGGAAGAAGAGAGCCCAATG
CAGAAATCAACAACGAATACAGAATCGAAAAGCATCGATATTGAAGATAT
TATTGAGAGCCCGATGCAGAAAAGTGTAGCAGAGACACCAGTGCAAAAAT
CCTCTTCTGCAGGGATTGCAACTGGGACTGTGATTGACGATGAAGACGAT
GTTAATGACAGCGAAGAAGATTTACAGGAGTATGATAGTAAACGTACCAA
GATGACAACTCCAAAGATTATAAATGTTGCACCTAAAACTAGTGTGAATA
CTGGTAAAGACAGTTCCTCGAATACTGAGAAAAAGTTGAACCAGGTGGAT
TCCGTTTCTAGTAAAACACTGAGTTCGTTAACGGATGGTGAATCTACGAT
GGCGAAGAAAAGTGAAGGAAGTGGGTCTGGTTCTGGAGCATCAGATTTGA
TGTCTGTAGCAAC Run BLAST on NCBI protein sequence of TCONS_00048714-protein >TCONS_00048714-protein ID=TCONS_00048714-protein|Name=TCONS_00048714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
KQKNKSAAQKLSKNKPLKGADMKHEHDKKIGHAKSKKEKMKNKKEKKVKA
LLKMDEEEDEDMAHVSSSKNLDIEEESPMQKSTTANTESKSIDVEEESPM
QKSTTNTESKSIDIEDIIESPMQKSVAETPVQKSSSAGIATGTVIDDEDD
VNDSEEDLQEYDSKRTKMTTPKIINVAPKTSVNTGKDSSSNTEKKLNQVD
SVSSKTLSSLTDGESTMAKKSEGSGSGSGASDLMSVA Run BLAST on NCBI transcript from alignment at scaffold_145:308990..309702 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048714 ID=TCONS_00048714|Name=TCONS_00048714|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at scaffold_145:308990..309702 (Clytia hemisphaerica)
GTTGCTACAGACATCAAATCTGATGCTCCAGAACCAGACCCACTTCCTTC
ACTTTTCTTCGCCATCGTAGATTCACCATCCGTTAACGAACTCAGTGTTT
TACTAGAAACGGAATCCACCTGGTTCAACTTTTTCTCAGTATTCGAGGAA
CTGTCTTTACCAGTATTCACACTAGTTTTAGGTGCAACATTTATAATCTT
TGGAGTTGTCATCTTGGTACGTTTACTATCATACTCCTGTAAATCTTCTT
CGCTGTCATTAACATCGTCTTCATCGTCAATCACAGTCCCAGTTGCAATC
CCTGCAGAAGAGGATTTTTGCACTGGTGTCTCTGCTACACTTTTCTGCAT
CGGGCTCTCAATAATATCTTCAATATCGATGCTTTTCGATTCTGTATTCG
TTGTTGATTTCTGCATTGGGCTCTCTTCTTCCACATCAATACTTTTCGAT
TCTGTATTTGCTGTTGTTGATTTCTGCATAGGGCTTTCTTCTTCGATATC
GAGATTTTTCGAAGAAGAAACGTGAGCCATGTCTTCGTCCTCCTCTTCAT
CCATCTTCAACAACGCTTTcactttcttctctttcttaTTCTTCATTTTC
TCCTTCTTCGATTTTGCATGTCCGATTTTCTTATCGTGTTCATGTTTCAT
ATCAGCACCTTTCAATGGCTTATTTTTTGACAGTTTCTGTGCTGCCGATT
TGTTTTTCTGTTT Coding sequence (CDS) from alignment at scaffold_145:308990..309702 >TCONS_00048714 ID=TCONS_00048714|Name=TCONS_00048714|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_145:308990..309702 (Clytia hemisphaerica)
TGCTACAGACATCAAATCTGATGCTCCAGAACCAGACCCACTTCCTTCAC
TTTTCTTCGCCATCGTAGATTCACCATCCGTTAACGAACTCAGTGTTTTA
CTAGAAACGGAATCCACCTGGTTCAACTTTTTCTCAGTATTCGAGGAACT
GTCTTTACCAGTATTCACACTAGTTTTAGGTGCAACATTTATAATCTTTG
GAGTTGTCATCTTGGTACGTTTACTATCATACTCCTGTAAATCTTCTTCG
CTGTCATTAACATCGTCTTCATCGTCAATCACAGTCCCAGTTGCAATCCC
TGCAGAAGAGGATTTTTGCACTGGTGTCTCTGCTACACTTTTCTGCATCG
GGCTCTCAATAATATCTTCAATATCGATGCTTTTCGATTCTGTATTCGTT
GTTGATTTCTGCATTGGGCTCTCTTCTTCCACATCAATACTTTTCGATTC
TGTATTTGCTGTTGTTGATTTCTGCATAGGGCTTTCTTCTTCGATATCGA
GATTTTTCGAAGAAGAAACGTGAGCCATGTCTTCGTCCTCCTCTTCATCC
ATCTTCAACAACGCTTTcactttcttctctttcttaTTCTTCATTTTCTC
CTTCTTCGATTTTGCATGTCCGATTTTCTTATCGTGTTCATGTTTCATAT
CAGCACCTTTCAATGGCTTATTTTTTGACAGTTTCTGTGCTGCCGATTTG
TTTTTCTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048714-exon-scaffold_145-1491911889:308990..309702 | TCONS_00048714-exon-scaffold_145-1491911889:308990..309702 | Clytia hemisphaerica | exon |
| TCONS_00048714-exon-scaffold_145-1510915933:308990..309702 | TCONS_00048714-exon-scaffold_145-1510915933:308990..309702 | Clytia hemisphaerica | exon |
| TCONS_00048714-exon-scaffold_145-1575043694:308990..309702 | TCONS_00048714-exon-scaffold_145-1575043694:308990..309702 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:308990..309702 . |
Blast
The following BLAST results are available for this feature:
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