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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048717 ID=TCONS_00048717|Name=TCONS_00048717|organism=Clytia hemisphaerica|type=transcript|length=4048bp
Naaaatttaaaatttgaaaaatcttctggagttgctacgcctgggtcaac
ccatgcaatgtgaggggaattgggtatatagtcagttcaaggtgctgacg
ggatgcttactcaaagcatctatagttgcgagaaaaggctcccagagcct
cctgtaactcaaccataatagatagatagataaatagACAGTTCCAGTTA
CTTATAGTCTACAGTGTTATAGATTTCCCAACCAGGGACGATCAAGAGTG
AGGAAAAGTCCTAGATAGACCTTGTCATCTTTCCATATGCCAGTCAAAGG
ATTTATGACAAATTAGGATACCTTTCCTACAGCTAATACCTCCTAATTAG
TAGACCGGGAGAGTACCGTGAGATCNCTCCTACAGCTTATACCTCCTAAT
TAGTAGACCGGGAGAgtaccgtgagatcaggtaacttgcatcagtggagg
ccaACATGCATTGAtctcaaataaataaaatacattaaattaaaaaataa
aagttaaataaaaataaaaatggtagagttAAGTTAGAGTTGTGTAGTtg
ctttgttttcaaattttgctgctttgattggtcagtcatttgatgggtat
gcaagtttccctccactgatgcaagttacccaacttcacggtagTATCCA
AATTAGGAGATTCAGATATGCTAAATAAGAGAGCAGACACTTTGACCTAA
ATTGTTTCAggtagaccttttcgcctttccattcgccatattgaattgta
tgcaaaaattatggtggccgaattgccgtggtgagaATGCATTGAAAGAA
AATATACAAAACCTACCTACCTCCATTAATTTTTGTGTGCCTTTTATTTT
TGCGCAGAAGACGTGCGCTAAGAAATAAAAGGCGTGCGAAATAGGCCTTA
TTTTTGCGCACATGATCGCGCAAAAATTAAAGGGTGTGCAAATTAGTAAT
TGTTCTGAACGTTTAGAAATCTTATCTTAGGGCTGTTTTAATAAAATGGA
ACCTTGTTCACGATAATTATGCTTCTGGGATGTAAAATCTAGCTTGAATA
CGTACGCTGAAAGTGAGTAAAACTCACTTTAAATTGTCAAAAACACTCAG
AAAATATCCAAGAAATTGCAAgctgcgcgaaaattaaaggcgCAAAAATT
AAAGGCACAAAAATTAAAGGagcgcaaaaattaattttactaACGTGTTG
GACCTGACTTTGTATATCAAAACGGTGGTTTCGATATTTTCTTGCACGGG
AAAGaatgtgtgatgtcataataactttttcttgtgtttttttaCTATAA
acgctgtttttaccaaaatttcagCAATTACAGGAGGGGCAGCGTTTGAT
AATCGGACGCTAAAAGGGCATAAAAAATGGCCTGGCTTATCCAGCAGTGC
GCAGATCTAGGAGGGTGTCTTCTCCCgtaaatctttttcttgggaagttg
ttgtccaaattagttttcaaggatGGCTcggttcaaattttttatctatA
TATATGGCTCAAAATTTGggtaatttctcaaagtttttgaaaatatgaat
ttcattaaaaagcgccggtttattttatcttaaattttTACTGCGCATTC
TTTTGCTTGCAAGTGAAGTAAATGATAAAGCGCTTTGGCAGCATTAATCT
NGGAATTTTAAtgtatgcaaaaagaaagtattactATACTgtagtgtaat
cttgtagaagaaagattaaattagcttttcttgaaaactaaaaataatca
tattcactcatctcttagaacaagcacttcaaaaaaccataacattagac
ataaactcaagctgaaaaatcaccagcgaaggtacaaaaataatccttat
tcggctgacggaaAATTATTCTCTTGGGAATAGAACCACCAAATGATcta
atcaaaacattgatctgatcCCCCTGATTTACAGCAGTTTTTACTAACGT
GTTGGACCTGACTTTGTATATCAAAACGGTGGTTTCGATATTTTCTTGCA
CGGGAAAGaatgtgtgatgtcataataactttttcttgtgtttttttaCT
ATAAacgctgtttttaccaaaatttcagCAATTACAGGAGGGGCAGCGCA
GGGCAGCGTTTGATAACCGGACGCTAATAGGGCATAAAAAATGGCCTGGC
TTATCcagcagtgcgcggatctaggagGGTGTCTTCTCCCGTAAATcatt
ttcttgggaagttgttgtccaaattagttttcaaggatGGCTCGGTTAAA
ATCTTTTAtctatatatagtatgaaaaaataaaatgttttctcctgtcag
aactacaaacaacaaagagtggccgaattctttttcctcttagagagacg
atgttacaatgaaagggtaattagtcctctctgggtccctctgtctttat
cctggcttgggacaggctgactggcatttaagacagtcaggcgacattac
cccagcggcctgtacaagatgacaacaaactccaggtagactgaCAGCCA
TTATATATGGCTCAAAATTTAggtaatttctcaaagtttttgaaaatatg
aatttgattaaaaagcgccggtttattttatcataaatttttACTGCGCA
TTCTTTTGCTTGCAAGTGAAGTAAACAATAAAGCGCTtggcagcattaat
ctttgatatgcattttggcaGGACGCTGGTGTGAATAACTGATTGGCCTT
CATTTTTGCATAAGATGGCAAATGGAAAGACGAAGAGCTCTATTTTCCCC
AATATTTTCAAATAGACATTTTTCTAAAGCTGCGATACCATTTTGACTCA
TGATAATAATTTTTACCATGAAAACATTCCAAATAACTCCATTATAACCT
AATAGTAGATCACCTTCCACCTGTTTAATTTTAATCTTGttgtgtttctt
aaaaagagTCCGCACAGCTCGTGCCTAAAAATACACATGAAATCATTAGG
TTGCCAAGTTCCAGAATGTCAAAAGCCTAATGACTGTGTCTGTACTTTCT
AGTTTAGTGTGTGGACACATAAAGTAAAATCAATAAATATAGAAATCAAG
CCCTAAAAAAAGACAGTCATCTCAATTTAACTGTGCTATAAATTTGTAGT
TGCTTAAAAATAAATGGCTGGTATTGATTTAGTTTCACCTGAAGGTTTGC
GGTTGGATGGTAGAAAATGTCACGAGCTTAGGAAAATTATCTGCAAAAAA
GGAATATTTGTCCAAGCAGATGGATCTGCCTCCATTGAGCAAGGTAACAC
AAAAGTTGTGGCAAGTGTATATGGGCCACATGAAGTTACCGTTCGATCAA
AAGCTCTGCATGATTCATGTGTTATAAATTGTCAGTATAGAATGGCATCA
TTCAGCACAAGTGAGCGTAAACATCGAAATAAAGGGGACAGAAAATCAAC
GGACATTTCACTGATGCTTTCAAAGATGTTCGAAACTGCCATAATGAAAG
AATTGTATCCTCGCTCACAAATCGATATTTATATACAAGTGATTCAATCT
GATGGAGGAAACATAGCAGCATCAATAAACGCTGCCACCCTTGCACTCAT
TGATGCTGGACTTCCAATGAAGGACTTTGTTTGTGCTTGCTCATCAAGTT
ATGTTCGAGAAAATTTTCTAGCTGATATAAATTATCTGGAGGAGAGTTCT
GGTGTATCTAGGGTTACATTAGGGATGCTTCCTAAGAGTGAAAAAGTTGT
GTTTTTTCAAATGGATTCTCGTTTACATAAAGACCATTTAGAAAACTTAT
TAGAGACCACCAAAGCTGCTTGTTTGGATGTGTGGAGTGTCTTGAGAGAA
GCTGTGAAAGAACACTCGCATAAACAAGCTATCACCCTGGTTGTTTGAAA
TGTGAAACTATAATGCACTTTTATTATTTGTATATAATGTGATTTGtttc
agaaaagattttttAGATTATTTCCATGTTGTTCCTTTGTTATAACTTAC
AGTATATGATTTTTGTGTCCTTGGAACtttaaaaagtttcttttatcTGA
TCTTAGCAAagcctttaaaaatatttcttttcttgatcaaaaaaaaat Run BLAST on NCBI protein sequence of TCONS_00048717-protein >TCONS_00048717-protein ID=TCONS_00048717-protein|Name=TCONS_00048717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MAGIDLVSPEGLRLDGRKCHELRKIICKKGIFVQADGSASIEQGNTKVVA
SVYGPHEVTVRSKALHDSCVINCQYRMASFSTSERKHRNKGDRKSTDISL
MLSKMFETAIMKELYPRSQIDIYIQVIQSDGGNIAASINAATLALIDAGL
PMKDFVCACSSSYVRENFLADINYLEESSGVSRVTLGMLPKSEKVVFFQM
DSRLHKDHLENLLETTKAACLDVWSVLREAVKEHSHKQAITLVV Run BLAST on NCBI transcript from alignment at scaffold_145:402814..406861 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048717 ID=TCONS_00048717|Name=TCONS_00048717|organism=Clytia hemisphaerica|type=transcript|length=4048bp|location=Sequence derived from alignment at scaffold_145:402814..406861 (Clytia hemisphaerica)
atttttttttgatcaagaaaagaaatatttttaaaggctTTGCTAAGATC
AgataaaagaaactttttaaaGTTCCAAGGACACAAAAATCATATACTGT
AAGTTATAACAAAGGAACAACATGGAAATAATCTaaaaaatcttttctga
aaCAAATCACATTATATACAAATAATAAAAGTGCATTATAGTTTCACATT
TCAAACAACCAGGGTGATAGCTTGTTTATGCGAGTGTTCTTTCACAGCTT
CTCTCAAGACACTCCACACATCCAAACAAGCAGCTTTGGTGGTCTCTAAT
AAGTTTTCTAAATGGTCTTTATGTAAACGAGAATCCATTTGAAAAAACAC
AACTTTTTCACTCTTAGGAAGCATCCCTAATGTAACCCTAGATACACCAG
AACTCTCCTCCAGATAATTTATATCAGCTAGAAAATTTTCTCGAACATAA
CTTGATGAGCAAGCACAAACAAAGTCCTTCATTGGAAGTCCAGCATCAAT
GAGTGCAAGGGTGGCAGCGTTTATTGATGCTGCTATGTTTCCTCCATCAG
ATTGAATCACTTGTATATAAATATCGATTTGTGAGCGAGGATACAATTCT
TTCATTATGGCAGTTTCGAACATCTTTGAAAGCATCAGTGAAATGTCCGT
TGATTTTCTGTCCCCTTTATTTCGATGTTTACGCTCACTTGTGCTGAATG
ATGCCATTCTATACTGACAATTTATAACACATGAATCATGCAGAGCTTTT
GATCGAACGGTAACTTCATGTGGCCCATATACACTTGCCACAACTTTTGT
GTTACCTTGCTCAATGGAGGCAGATCCATCTGCTTGGACAAATATTCCTT
TTTTGCAGATAATTTTCCTAAGCTCGTGACATTTTCTACCATCCAACCGC
AAACCTTCAGGTGAAACTAAATCAATACCAGCCATTTATTTTTAAGCAAC
TACAAATTTATAGCACAGTTAAATTGAGATGACTGTCTTTTTTTAGGGCT
TGATTTCTATATTTATTGATTTTACTTTATGTGTCCACACACTAAACTAG
AAAGTACAGACACAGTCATTAGGCTTTTGACATTCTGGAACTTGGCAACC
TAATGATTTCATGTGTATTTTTAGGCACGAGCTGTGCGGActctttttaa
gaaacacaaCAAGATTAAAATTAAACAGGTGGAAGGTGATCTACTATTAG
GTTATAATGGAGTTATTTGGAATGTTTTCATGGTAAAAATTATTATCATG
AGTCAAAATGGTATCGCAGCTTTAGAAAAATGTCTATTTGAAAATATTGG
GGAAAATAGAGCTCTTCGTCTTTCCATTTGCCATCTTATGCAAAAATGAA
GGCCAATCAGTTATTCACACCAGCGTCCtgccaaaatgcatatcaaagat
taatgctgccaAGCGCTTTATTGTTTACTTCACTTGCAAGCAAAAGAATG
CGCAGTaaaaatttatgataaaataaaccggcgctttttaatcaaattca
tattttcaaaaactttgagaaattaccTAAATTTTGAGCCATATATAATG
GCTGtcagtctacctggagtttgttgtcatcttgtacaggccgctggggt
aatgtcgcctgactgtcttaaatgccagtcagcctgtcccaagccaggat
aaagacagagggacccagagaggactaattaccctttcattgtaacatcg
tctctctaagaggaaaaagaattcggccactctttgttgtttgtagttct
gacaggagaaaacattttattttttcatactatatatagaTAAAAGATTT
TAACCGAGCCatccttgaaaactaatttggacaacaacttcccaagaaaa
tgATTTACGGGAGAAGACACCctcctagatccgcgcactgctgGATAAGC
CAGGCCATTTTTTATGCCCTATTAGCGTCCGGTTATCAAACGCTGCCCTG
CGCTGCCCCTCCTGTAATTGctgaaattttggtaaaaacagcgtTTATAG
taaaaaaacacaagaaaaagttattatgacatcacacattCTTTCCCGTG
CAAGAAAATATCGAAACCACCGTTTTGATATACAAAGTCAGGTCCAACAC
GTTAGTAAAAACTGCTGTAAATCAGGGGgatcagatcaatgttttgatta
gATCATTTGGTGGTTCTATTCCCAAGAGAATAATTttccgtcagccgaat
aaggattatttttgtaccttcgctggtgatttttcagcttgagtttatgt
ctaatgttatggttttttgaagtgcttgttctaagagatgagtgaatatg
attatttttagttttcaagaaaagctaatttaatctttcttctacaagat
tacactacAGTATagtaatactttctttttgcatacaTTAAAATTCCNAG
ATTAATGCTGCCAAAGCGCTTTATCATTTACTTCACTTGCAAGCAAAAGA
ATGCGCAGTAaaaatttaagataaaataaaccggcgctttttaatgaaat
tcatattttcaaaaactttgagaaattaccCAAATTTTGAGCCATATATa
tagataaaaaatttgaaccgAGCCatccttgaaaactaatttggacaaca
acttcccaagaaaaagatttacGGGAGAAGACACCCTCCTAGATCTGCGC
ACTGCTGGATAAGCCAGGCCATTTTTTATGCCCTTTTAGCGTCCGATTAT
CAAACGCTGCCCCTCCTGTAATTGctgaaattttggtaaaaacagcgtTT
ATAGtaaaaaaacacaagaaaaagttattatgacatcacacattCTTTCC
CGTGCAAGAAAATATCGAAACCACCGTTTTGATATACAAAGTCAGGTCCA
ACACGTtagtaaaattaatttttgcgctCCTTTAATTTTTGTGCCTTTAA
TTTTTGcgcctttaattttcgcgcagcTTGCAATTTCTTGGATATTTTCT
GAGTGTTTTTGACAATTTAAAGTGAGTTTTACTCACTTTCAGCGTACGTA
TTCAAGCTAGATTTTACATCCCAGAAGCATAATTATCGTGAACAAGGTTC
CATTTTATTAAAACAGCCCTAAGATAAGATTTCTAAACGTTCAGAACAAT
TACTAATTTGCACACCCTTTAATTTTTGCGCGATCATGTGCGCAAAAATA
AGGCCTATTTCGCACGCCTTTTATTTCTTAGCGCACGTCTTCTGCGCAAA
AATAAAAGGCACACAAAAATTAATGGAGGTAGGTAGGTTTTGTATATTTT
CTTTCAATGCATtctcaccacggcaattcggccaccataatttttgcata
caattcaatatggcgaatggaaaggcgaaaaggtctaccTGAAACAATTT
AGGTCAAAGTGTCTGCTCTCTTATTTAGCATATCTGAATCTCCTAATTTG
GATActaccgtgaagttgggtaacttgcatcagtggagggaaacttgcat
acccatcaaatgactgaccaatcaaagcagcaaaatttgaaaacaaagca
ACTACACAACTCTAACTTaactctaccatttttatttttatttaactttt
attttttaatttaatgtattttatttatttgagaTCAATGCATGTtggcc
tccactgatgcaagttacctgatctcacggtacTCTCCCGGTCTACTAAT
TAGGAGGTATAAGCTGTAGGAGNGATCTCACGGTACTCTCCCGGTCTACT
AATTAGGAGGTATTAGCTGTAGGAAAGGTATCCTAATTTGTCATAAATCC
TTTGACTGGCATATGGAAAGATGACAAGGTCTATCTAGGACTTTTCCTCA
CTCTTGATCGTCCCTGGTTGGGAAATCTATAACACTGTAGACTATAAGTA
ACTGGAACTGTctatttatctatctatctattatggttgagttacaggag
gctctgggagccttttctcgcaactatagatgctttgagtaagcatcccg
tcagcaccttgaactgactatatacccaattcccctcacattgcatgggt
tgacccaggcgtagcaactccagaagatttttcaaattttaaattttN Coding sequence (CDS) from alignment at scaffold_145:402814..406861 >TCONS_00048717 ID=TCONS_00048717|Name=TCONS_00048717|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_145:402814..406861 (Clytia hemisphaerica)
TCAAACAACCAGGGTGATAGCTTGTTTATGCGAGTGTTCTTTCACAGCTT
CTCTCAAGACACTCCACACATCCAAACAAGCAGCTTTGGTGGTCTCTAAT
AAGTTTTCTAAATGGTCTTTATGTAAACGAGAATCCATTTGAAAAAACAC
AACTTTTTCACTCTTAGGAAGCATCCCTAATGTAACCCTAGATACACCAG
AACTCTCCTCCAGATAATTTATATCAGCTAGAAAATTTTCTCGAACATAA
CTTGATGAGCAAGCACAAACAAAGTCCTTCATTGGAAGTCCAGCATCAAT
GAGTGCAAGGGTGGCAGCGTTTATTGATGCTGCTATGTTTCCTCCATCAG
ATTGAATCACTTGTATATAAATATCGATTTGTGAGCGAGGATACAATTCT
TTCATTATGGCAGTTTCGAACATCTTTGAAAGCATCAGTGAAATGTCCGT
TGATTTTCTGTCCCCTTTATTTCGATGTTTACGCTCACTTGTGCTGAATG
ATGCCATTCTATACTGACAATTTATAACACATGAATCATGCAGAGCTTTT
GATCGAACGGTAACTTCATGTGGCCCATATACACTTGCCACAACTTTTGT
GTTACCTTGCTCAATGGAGGCAGATCCATCTGCTTGGACAAATATTCCTT
TTTTGCAGATAATTTTCCTAAGCTCGTGACATTTTCTACCATCCAACCGC
AAACCTTCAGGTGAAACTAAATCAATACCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048717-exon-scaffold_145-1491911889:402814..406861 | TCONS_00048717-exon-scaffold_145-1491911889:402814..406861 | Clytia hemisphaerica | exon |
| TCONS_00048717-exon-scaffold_145-1510915933:402814..406861 | TCONS_00048717-exon-scaffold_145-1510915933:402814..406861 | Clytia hemisphaerica | exon |
| TCONS_00048717-exon-scaffold_145-1575043694:402814..406861 | TCONS_00048717-exon-scaffold_145-1575043694:402814..406861 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:402814..406861 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00048717 vs. Swiss-Prot (Human)
Match: EXOS4 (Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3) HSP 1 Score: 284.263 bits (726), Expect = 9.282e-87 Identity = 129/243 (53.09%), Postives = 181/243 (74.49%), Query Frame = 3
Query: 3114 MAGIDLVSPEGLRLDGRKCHELRKIICKKGIFVQADGSASIEQGNTKVVASVYGPHEV-TVRSKALHDSCVINCQYRMASFSTSERKHRNKGDRKSTDISLMLSKMFETAIMKELYPRSQIDIYIQVIQSDGGNIAASINAATLALIDAGLPMKDFVCACSSSYVRENFLADINYLEESSGVSRVTLGMLPKSEKVVFFQMDSRLHKDHLENLLETTKAACLDVWSVLREAVKEHSHKQAITL 3839
MAG++L+S +G R+DGR+ ELRKI + G+F QADGSA IEQGNTK +A VYGPHE+ R++AL D ++NCQY A+FST ERK R GDRKS ++ L L + FE AI+ +L+PRSQIDIY+QV+Q+DGG AA +NAATLA++DAG+PM+DFVCACS+ +V LAD++++EE++G ++ L +LP S ++ +MD+RLH+DHLE +LE A DV ++L V++H + +I L
Sbjct: 1 MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 243
The following BLAST results are available for this feature:
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