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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048724 ID=TCONS_00048724|Name=TCONS_00048724|organism=Clytia hemisphaerica|type=transcript|length=4246bp
tcaaatataaCTTACAGTACTGTAATAAAACGTTCATAAGATTTAATTGT
TGGATTTTGATTATTGGAACAACTTGACCTGATCCCTGTAGAAATTCCGT
AAACAAAGTAGtttttgtcatctcttttatcaccaattTGGTATAACCAT
AAATACAACGGAGGCCTCtctcttttttaaaaatatatgcTTGAGTTact
atgtacatttaaaatttttttctttttttgttgattaaaataaaaatatt
gaggtAGTCGACTGAGGGAGAAGGGCAGTGGTATATATATAGATCGCAGA
GCTCGAGATGAAAGTGTAGCGTGGGAATCTCATcctgcaaaatcaaaaca
aacaaagtcTGGAAGATTGATTTCGAATAAAAATGGAGGAGATTGATTAT
AATGAATTAATGGGTGATTATCTCACAAGGCCAGGGTGGAAACGTGATGG
ATAGTTATCAAAGCCGTAGTGTGCATAGAATCACTTGGAAGAGCAGGAAA
AGATCTGGGAAAAGCTGTTATCATTTCTTGTTCGGGGCGGGGGCAGTAAA
ACCtccaattaacggacactctaaaagtcggacacctctgattagcggac
aattctattttccccggacatttcctagtcaaatcctcataaaaaagttt
ccaaatggcgaacactcaattagcggaccctccaATAAGCGGACaaaact
ttttgcatgaaatggCCAAACCCTACTTTTTtccctctaattagcggaca
tcgACGGTCAAAGTGGTCACAGACTTTAAAAAATTAGAAGGGATTGATTT
ATCCAAACTATTTAACACTTCAAAGTTTCATTGAACAAATTGCTTATAGA
CGTTTGGAGCGCTCCCTTTATCCAGTCGGTGAATTTGCTTACGTCGTAGA
AATAATAGGGACTTCGCGAGACTACTGTGattcataaaaactaaattgtC
GCATTTAGATAATCATTCTCTTGTTCTTCAATGTCCTAGTGTCTCTAGAA
AAGCACATCGGACCAAAGTCTTACATTAATCTCTTAATAGTACCTTCTTC
CAAAATTATAGCCATAattaaaaagtttctaaaaggcggacactaaCCCT
ATTCCCCGATgttgtccgctaattggaggttccactgtatataattatat
ataatttttttttcaaatatgaaTATATTTCAAACAATATCCTGCAGCTT
TCATTAAAATTATTGATATAGATAGGCCATCATAGTTATGCTTTGAAGAA
AAATATCGAACTCACGTCAACATTAATATTGTGTAAACCATATGTTCCAA
TTGGAGGAGGGGAAGGTGGCGGCGGTAAGGGCGGTTATGCCATCAGGGAA
CGAAAAAAATGGGGGTGGTTgaagtggtggtggtggtggtggttgtCTTG
TCGGTGAAGGTTTCTTGATAAAAGCCCTTCTTGAGATATCACTGACACGG
TGCTTAACTTAAACctgtaaaatgaaaataaagccTACTATATAGTTATG
CTTTAAAGAAAAACCTTTATATGAAGTTCACGTCAACATTAATATAGTGT
AAACCATATGTTCCAATTGGAGGAGGGGAAGGTGGCGGCGATGGTAGTGC
TACCAGGGGTCACAAAAACATTGGAGGAAGTTGAAGTGGTGGTAGACGAG
ATGGAGGTTGTCTTGGCAGTGATGGACGGTGTTGCGGCGGTAGTGGTGCG
GTTGGGGTGGTGGTGGCAAAGCAAATATTTGCCTTGGAACCACCCATTTC
CCCATTGACCAAGTTGCTGTTGAAAATTCATATTTCAAGGTAGATGTGAA
AACTAAATTTATTTTCTGAGTCAACTTCACTTACTGTAGGTGTTTCACAT
TAGTTTCGAAGATCTTTGAATTTATCGATTTCCTCTTCGCTTCAAggttc
aaatttttgttttagtttgtGTTTTTATCCGTGTTTCTTGGAGCGAAAGT
GATAGATATAGATGGACCATCATATTAATgctttaaagaaaaactttcat
aaGGAACTCACGTCAACATTAATATGGTGTAAACCACATGTTCCAATTGG
AGGTGGTGGTGGTTGAAGCGGTGGTTGTGGTTGTAGACGAGATGGTGGTT
GTCTTGGCAATGATGGACGGAATGGTAGTTGGTGTTGCGGTGGTAGTGGT
GCGGTTGGGGTGGTGGTGGCAAAGCAGATATTTGCATGTGAGGACGTTGT
TGGGCCATTGACCAGGTTGCTGTTGGGCCATTTTCTAGAACATAATATGA
AAAAGGGCCGTTCATTTTTCGTTACATGGATATTAGGTAATCTCTTATGT
ATTCACTGAATGTTCTTCATATCCTTTTTGTAGTTTTTGCTTATATTTCG
GAGAATGTCTTTGACCGGCTGCCAATCCGAGAAATTGTCTACGAATGACC
AACAGTCTCTTGGCTTGCAACTTTGCCACTTTTTGAAGTTGATCTCGTCA
TTTTGGATCAAATCTACGTAGTTGTAGAGGATCTTTAAGATGGTGTCCCT
TTGCCATTTACTAGCCTTGTACCAATCGTTTCCGTTTGACttcttattcg
cgaaattatgTATCTAGAACTCTCTAAGGCTACGGCTGAAgcggcgaggg
aaatggcgagtaaggcaagtaatggcgggtgaaagcaagtccgatatttg
acgtacggcattatatcgactttgcttatacggtgttttggtgtttttcc
catacagagcaaagtagacaacgatcTACTATGAGTAAACCTGCTAGAGT
AAACTTctggatttcaaaaatttaagtgACATGAGACTCAAAAGATAACA
AAATCTCcaaataaagaaataaatacaTTATCAGCTTTTATTTCACGAAA
CGCCTGCATGGCATCACGGGAAATTTCTAGGAAATAGAAAATAGAGGTAA
TGCTGCTCGCCCAAACATTAAAACATACCCGAACTAATGTAGAACGGCAA
ATCATGTCttaaaaacttctttttctcATTCCTGATAAATGTATTGTCTT
CGTACACAGGCATGGTGTAAAAGAGGTCACCCAAATTGTGAAATACTTTG
TGTCGCCAACTGCGTTGCTGCAAACACTTGAGGTGATTTATTGTTTGACT
AGAGAGTTTGACGATATCCTCCTTCTTCATCTCTCGGCAAAGTTTTGCCA
AACGACACATTTGGATTTCGGAGATCTCTttctctaaaaaaataagaGAT
GAATTTTACTATTACAATCCTTTTATAAGCAATAGGATGGtgaaaacttt
gagaaattttcattccttttaaaaaaaattaaaggtaGTGTCTTGTTTAA
AAAACCCCATTTTTGGACATTGAGCCAAGCCTGTTCATAAAACATGATAA
TTTTAATTCTTTCTGCTTCCTTATGAAAATCGGAGAATTGATTGAATTGA
AAAGCGTTGAAAGAAAAGGGATGAGATCTCTTTCTTGACATGATACTATC
TACTTTAATGTCAGAAAAATTGGcgtccagaaaatttcgcgagtAAGACA
ATTCGCAAAATTTCGCGTGTTTTGATGGAATTTAGTTTCGCGAATCGACA
AGATTAATTCATTTTGCAGGAAAttattttcgcaaaattggatTCTCCCA
CACTAAAACACTGGTAAAATAAGCTAAAAAGCGTGTTTTTCTGTTCTAAT
AAGCAAAATTTGACTAAGAAAACCTGAAAACTCTGTCTCGTAGGAATCAA
TTTTCGCGAATGAGCCAAAAGATTTTTTCGCGACTATTTCATTTCGCGAA
TTGAGGGGTCATTCGCGAAATTCGCGAAATTTTCTGGACGCAAAATTTTC
TGACCTTAAAGTACTCAATTATCCATAACGAGTCATTAAAATGTATCAAC
TAACCTTTAAGCATATCGTAGAATTCATCAATACCTGGTAAAAAAGAATA
ACAAAACAGTTTATGTGCTATAAAAGTAGGCAATACTATTCTTTTCTCCC
AAGGTCGTAAAATGCCCACTAATGAAAGTTCATTTTACCTTCATCATCAT
TGTCATTCTCATTATTAACATGACCATCACCTTCGGGAGCACACTGACCT
GATGCTGCTGAAAAGAAATAGAAAAATCAGTCCGTTAACATTAACCGTAA
GCTATTTACATAATGTTTGGTAACAACCAGTTTCATATCTATAAATGTAG
GCAATACTATTGAAGTATTCATACTGCTTCATTGTTATATCTCTTAATAA
ACCTAAAATCTCAGAATAATGCCTACTTTAAAAAAGGCTTTACACC Run BLAST on NCBI transcript from alignment at scaffold_146:42909..52305+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048724 ID=TCONS_00048724|Name=TCONS_00048724|organism=Clytia hemisphaerica|type=transcript|length=9397bp|location=Sequence derived from alignment at scaffold_146:42909..52305+ (Clytia hemisphaerica)
tcaaatataaCTTACAGTACTGTAATAAAACGTTCATAAGATTTAATTGT
TGGATTTTGATTATTGGAACAACTTGACCTGATCCCTGTAGAAATTCCGT
AAACAAAGTAGtttttgtcatctcttttatcaccaattTGGTATAACCAT
AAATACAACGGAGGCCTCtctcttttttaaaaatatatgcTTGAGTTact
atgtacatttaaaatttttttctttttttgttgattaaaataaaaatatt
gaggtAGTCGACTGAGGGAGAAGGGCAGTGGTATATATATAGATCGCAGA
GCTCGAGATGAAAGTGTAGCGTGGGAATCTCATcctgcaaaatcaaaaca
aacaaagtcTGGAAGATTGATTTCGAATAAAAATGGAGGAGATTGATTAT
AATGAATTAATGGGTGATTATCTCACAAGGCCAGGGTGGAAACGTGATGG
ATAGTTATCAAAGCCGTAGTGTGCATAGAATCACTTGGAAGAGCAGGAAA
AGATCTGGGAAAAGCTGTTATCATTTCTTGTTCGGGGCGGGGGCAGTAAA
ACCtccaattaacggacactctaaaagtcggacacctctgattagcggac
aattctattttccccggacatttcctagtcaaatcctcataaaaaagttt
ccaaatggcgaacactcaattagcggaccctccaATAAGCGGACaaaact
ttttgcatgaaatggCCAAACCCTACTTTTTtccctctaattagcggaca
tcgACGGTCAAAGTGGTCACAGACTTTAAAAAATTAGAAGGGATTGATTT
ATCCAAACTATTTAACACTTCAAAGTTTCATTGAACAAATTGCTTATAGA
CGTTTGGAGCGCTCCCTTTATCCAGTCGGTGAATTTGCTTACGTCGTAGA
AATAATAGGGACTTCGCGAGACTACTGTGattcataaaaactaaattgtC
GCATTTAGATAATCATTCTCTTGTTCTTCAATGTCCTAGTGTCTCTAGAA
AAGCACATCGGACCAAAGTCTTACATTAATCTCTTAATAGTACCTTCTTC
CAAAATTATAGCCATAattaaaaagtttctaaaaggcggacactaaCCCT
ATTCCCCGATgttgtccgctaattggaggttccactgtatataattatat
ataatttttttttcaaatatgaaTATATTTCAAACAATATCCTGCAGCTT
TCATTAAAATTATTGATATAGATAGGccacatggcgttctaaattcaagg
cctagcaagcgtgctttgacgtcaaaatcctGTGGACCTAATTAATGATG
TCATTGCAGTGTTGacgtcaaaagaaagaaaaNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTGGTCAGGTTTTACA
GCTTTGATGATTTCGTTGATAAATGTCCTGTCGGATGTGTTGTTGACTTT
GGACGAGATGTTGGTTAGCGTCTTGATTGAGTGGAGTTTGAAATCGGATC
GGAGCCTTGAGTAGAGTGAACGAGATTGAGAAAAGTAGCCGAATGCTCGC
ATCAGTACTTGTGGAGAATAGAGTTTTTTTCCAACTTGAGGTGGTTTCAT
AGATTctatttgttcttgtaaaatggTTTGATGCCGAGTGAATtcactat
ttttcaaaaagcaaagtgCTTCCTCAAGACACGACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCATGAATCGAGATGAGTGATACGATTTTTCGAAAGGG
ATTTTATGGTACATTGAACACCCATTTTGTACGCAATGAATCTCAAATCT
TTCGAtattttcagtgaaaatgatggtATTCCTGATATATATTCACCAGA
TTGAATCCACTGTTCACCATTGACTTGCGACAATAGGCAAACCGAGTAAT
GTCAATCGATCGGAGTTGGCGATGTCCTCAAATTTTAGTTTGTCGCGATT
TCTAAACTCTTCCATCTCATCCTCCTGCTGGCTGCGAGTTTCGAAAGACG
TGCGTTTTGTTGGTCTTGGAGGTGGAAGAGGTGTTGGAATGGAACTGGAC
GGTatattatcaaagattgatggtGGTTCGATTGGTCGAGGAAGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNCTTTCTTTCTTTTGACGTCAACACTGCAATG
ACATCATTAATTAGGTCCACaggattttgacgtcaaagcacgcttgctag
gccttgaatttagaacgccatgataGGCCATCATAGTTATGCTTTGAAGA
AAAATATCGAACTCACGTCAACATTAATATTGTGTAAACCATATGTTCCA
ATTGGAGGAGGGGAAGGTGGCGGCGGTAAGGGCGGTTATGCCATCAGGGA
ACGAAAAAAATGGGGGTGGTTgaagtggtggtggtggtggtggttgtCTT
GTCGGTGAAGGTTTCTTGATAAAAGCCCTTCTTGAGATATCACTGACACG
GTGCTTAACTTAAACctgtaaaatgaaaataaagccTACTATATAGTTAT
GCTTTAAAGAAAAACCTTTATATGAAGTTCACGTCAACATTAATATAGTG
TAAACCATATGTTCCAATTGGAGGAGGGGAAGGTGGCGGCGATGGTAGTG
CTACCAGGGGTCACAAAAACATTGGAGGAAGTTGAAGTGGTGGTAGACGA
GATGGAGGTTGTCTTGGCAGTGATGGACGGTGTTGCGGCGGTAGTGGTGC
GGTTGGGGTGGTGGTGGCAAAGCAAATATTTGCCTTGGAACCACCCATTT
CCCCATTGACCAAGTTGCTGTTGAAAATTCATATTTCAAGGTAGATGTGA
AAACTAAATTTATTTTCTGAGTCAACTTCACTTACTGTAGGTGTTTCACA
TTAGTTTCGAAGATCTTTGAATTTATCGATTTCCTCTTCGCTTCAAggtt
caaatttttgttttagtttgtGTTTTTATCCGTGTTTCTTGGAGCGAAAG
TGATAGATATAGATGGACCATCATATTAATgctttaaagaaaaactttca
taaGGAACTCACGTCAACATTAATATGGTGTAAACCACATGTTCCAATTG
GAGGTGGTGGTGGTTGAAGCGGTGGTTGTGGTTGTAGACGAGATGGTGGT
TGTCTTGGCAATGATGGACGGAATGGTAGTTGGTGTTGCGGTGGTAGTGG
TGCGGTTGGGGTGGTGGTGGCAAAGCAGATATTTGCATGTGAGGACGTTG
TTGGGCCATTGACCAGGTTGCTGTTGGGCCATTTTCTAGAACATAATATG
AAAAAGGGCCGTTCATTTTTCGTTACATGGATATTAGGTAATCTCTTATG
TATTCACTGAATGTTCTTCATATCCTTTTTGTAGTTTTTGCTTATATTTC
GGAGAATGTCTTTGACCGGCTGCCAATCCGAGAAATTGTCTACGAATGAC
CAACAGTCTCTTGGCTTGCAACTTTGCCACTTTTTGAAGTTGATCTCGTC
ATTTTGGATCAAATCTACGTAGTTGTAGAGGATCTTTAAGATGGTGTCCC
TTTGCCATTTACTAGCCTTGTACCAATCGTTTCCGTTTGACttcttattc
gcgaaattatgTATCTAGAACTCTCTAAGGCTACGGCTGAAgcggcgagg
gaaatggcgagtaaggcaagtaatggcgggtgaaagcaagtccgatattt
gacgtacggcattatatcgactttgcttatacggtgttttggtgtttttc
ccatacagagcaaagtagacaacgatcTACTATGAGTAAACCTGCTAGAG
TAAACTTctggatttcaaaaatttaagtgACATGAGACTCAAAAGATAAC
AAAATCTCcaaataaagaaataaatacaTTATCAGCTTTTATTTCACGAA
ACGCCTGCATGGCATCACGGGAAATTTCTAGGAAATAGAAAATAGAGGTA
ATGCTGCTCGCCCAAACATTAAAACATACCCGAACTAATGTAGAACGGCA
AATCATGTCttaaaaacttctttttctcATTCCTGATAAATGTATTGTCT
TCGTACACAGGCATGGTGTAAAAGAGGTCACCCAAATTGTGAAATACTTT
GTGTCGCCAACTGCGTTGCTGCAAACACTTGAGGTGATTTATTGTTTGAC
TAGAGAGTTTGACGATATCCTCCTTCTTCATCTCTCGGCAAAGTTTTGCC
AAACGACACATTTGGATTTCGGAGATCTCTttctctaaaaaaataagaGA
TGAATTTTACTATTACAATCCTTTTATAAGCAATAGGATGGtgaaaactt
tgagaaattttcattccttttaaaaaaaattaaaggtaGTGTCTTGTTTA
AAAAACCCCATTTTTGGACATTGAGCCAAGCCTGTTCATAAAACATGATA
ATTTTAATTCTTTCTGCTTCCTTATGAAAATCGGAGAATTGATTGAATTG
AAAAGCGTTGAAAGAAAAGGGATGAGATCTCTTTCTTGACATGATACTAT
CTACTTTAATGTCAGAAAAATTGGcgtccagaaaatttcgcgagtAAGAC
AATTCGCAAAATTTCGCGTGTTTTGATGGAATTTAGTTTCGCGAATCGAC
AAGATTAATTCATTTTGCAGGAAAttattttcgcaaaattggatTCTCCC
ACACTAAAACACTGGTAAAATAAGCTAAAAAGCGTGTTTTTCTGTTCTAA
TAAGCAAAATTTGACTAAGAAAACCTGAAAACTCTGTCTCGTAGGAATCA
ATTTTCGCGAATGAGCCAAAAGATTTTTTCGCGACTATTTCATTTCGCGA
ATTGAGGGGTCATTCGCGAAATTCGCGAAATTTTCTGGACGCAAAATTTT
CTGACCTTAAAGTACTCAATTATCCATAACGAGTCATTAAAATGTATCAA
CTAACCTTTAAGCATATCGTAGAATTCATCAATACCTGGTAAAAAAGAAT
AACAAAACAGTTTATGTGCTATAAAAGTAGGCAATACTATTCTTTTCTCC
CAAGGTCGTAAAATGCCCACTAATGAAAGTTCATTTTACCTTCATCATCA
TTGTCATTCTCATTATTAACATGACCATCACCTTCGGGAGCACACTGACC
TGATGCTGCTGAAAAGAAATAGAAAAATCAGTCCGTTAACATTAACCGTA
AGCTATTTACATAATGTTTGGTAACAACCAGTTTCATATCTATAAATGTA
GGCAATACTATTGAAGTATTCATACTGCTTCATTGTTATATCTCTTAATA
AACCTAAAATCTCAGAATAATGCCTACTTTAAAAAAGGCTTTACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048724-exon-scaffold_146-1491911889:42909..44133 | TCONS_00048724-exon-scaffold_146-1491911889:42909..44133 | Clytia hemisphaerica | exon |
| TCONS_00048724-exon-scaffold_146-1510915933:42909..44133 | TCONS_00048724-exon-scaffold_146-1510915933:42909..44133 | Clytia hemisphaerica | exon |
| TCONS_00048724-exon-scaffold_146-1575043694:42909..44133 | TCONS_00048724-exon-scaffold_146-1575043694:42909..44133 | Clytia hemisphaerica | exon |
| TCONS_00048724-exon-scaffold_146-1491911889:49285..52305 | TCONS_00048724-exon-scaffold_146-1491911889:49285..52305 | Clytia hemisphaerica | exon |
| TCONS_00048724-exon-scaffold_146-1510915933:49285..52305 | TCONS_00048724-exon-scaffold_146-1510915933:49285..52305 | Clytia hemisphaerica | exon |
| TCONS_00048724-exon-scaffold_146-1575043694:49285..52305 | TCONS_00048724-exon-scaffold_146-1575043694:49285..52305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:42909..52305 + |
Blast
The following BLAST results are available for this feature:
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