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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048736 ID=TCONS_00048736|Name=TCONS_00048736|organism=Clytia hemisphaerica|type=transcript|length=1103bp
TCCCAATGCATTATGGGAGCTTTTCCAATGTATTATGGAAGCTTTCCCAA
TGCATTATGGGAGCTTTCCCAATGCATTATGATGCACAATGAGGTTATGA
CTATGTTCTATTTGTAGTATTTATTATCCTTGGTGAATTTATTTAATCTT
TTCTCTCAAATAGAAAATTTCCAAACTGCAAACGGTTGTGTAGACATAGA
GGGCCAACTTGGTTATACTTATACAATTGGATCATTGGACCAAGAATATT
GGCCAAGATTACCCAAACGGAAATATGAAGATATTGGTGAACCGGAAAGC
AACGTACCAGCCGCCCCGGGACTGCCCACCGTTCGAAAGACAACTGGTGA
ACATTTGAAGTCCAAGATGAAATCTTTGaaagagaaaatcaaaaagaaaa
agtcaggCCCGTCGGCCGCCCCTAAACCTAGTACGGGTGGGGGCGGAACA
CCCATAGAAATTATGTATGAGATGAACCACAAGATTACTTCTTTGGgaaa
agaaagtgaagaaaaacagGAAGGATGGCCTGAAGAATTCAAGATGGTTA
ATGACAGCTTTGAAATAGACGGCACTAATTTCAAACGTGAATTTTATACC
AAAGTGGAAGGGATTGACATGAATCAGTTTTATGGGTCGTTTATCGTTAT
CACTGGAAGAAGGATTTATGACGAGCAATCCAATAAGTACGTGTGGACAA
TTATTCATCAGAAAGCTGTTCTCGCAAGaTGGGACAAAAGCGCATGCAAA
AATTGTCAGAATCACAGCTCTGTTGATCTGTGCTTTTCAATGGGAAAAGT
TCTTCCAGgagatttattgaaaaataattggaATGTTTGGTTCGTCTTTC
GCAGAATGGATAATCACAGATTTGCTATTTTTCCTGTTGTCCCTTACTCA
GATGGTAATGGAGAAAGAGTCCCAGAGAATTCGTATCGCGAGATCAATCA
CTTTGTCAGAATTTGTGAAATGCCCAGTAAGAATTGAACTGAGGTGTCCA
GTATAAATTAAACTGTGAGGTGCCAATTATAAATTGCATTTTGAGGTGCC
CATTATTGAATTAAACTGAGGTGCCCAGTATAAATTAAACTGTGAGGTGC
CCA Run BLAST on NCBI transcript from alignment at scaffold_146:277092..279262+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048736 ID=TCONS_00048736|Name=TCONS_00048736|organism=Clytia hemisphaerica|type=transcript|length=2171bp|location=Sequence derived from alignment at scaffold_146:277092..279262+ (Clytia hemisphaerica)
TCCCAATGCATTATGGGAGCTTTTCCAATGTATTATGGAAGCTTTCCCAA
TGCATTATGGGAGCTTTCCCAATGCATTATGATGCACAATGAGGTTATGA
CTATGTTCTATTTGTAGTATTTATTATCCTTGGTGAATTTATTTAATCTT
TTCTCTCAAATAGAAAATTTCCAAACTGCAAACGGTTGTGTAGACATAGA
GGGCCAACTTGGTTATACTTATACAATTGGATCATTGGACCAAGAATATT
GGCCAAGATTACCCAAACGGAAATATGAAGATGTGAGTACAAGTTTGATT
TCAAATTACACCCTGGGCACCCTCCTACttgaaaaatttgccaaaatatc
aTCTCCAGTGTAAAATAGTATATACAACTGATGTCtttgctgaaaataat
caggTGAAATAATCCCTACCTGCAAAATATTGACCTTTTTTCATcaccac
tgaattttttaacttaaaaatACTTTTACTGAAATTCGAATTCCCCAGTC
ATGCAAATATAAGATAATATAAGTGAATATCATCTGTTGGACTGGCTGCC
TCACTCGTCCCTGGAAGTCTGAGATCTAGTAAACAATGGAATTCTAGGAT
AGAGCACGAGGGCGGTCCGCCAATATTCCACGCTGTCGAAAGCGTGTCAA
ATGCAGTTTTACTTTAACATCAAAATCTCATATTGTATCATGGCAGATTG
GTGAACCGGAAAGCAACGTACCAGCCGCCCCGGGACTGCCCACCGTTCGA
AAGACAACTGGTGAACATTTGAAGTCCAAGATGAAATCTTTGaaagagaa
aatcaaaaagaaaaagtcaggCCCGTCGGCCGCCCCTAAACCTAGTACGG
GTGGGGGCGGAACACCCATAGAAATTATGTATGAGATGAACCACAAGATT
ACTTCTTTGGgaaaagaaagtgaagaaaaacagGAAGGATGGCCTGAAGA
ATTCAAGATGGTTAATGACAGCTTTGAAATAGACGGCACTAATTTCAAAC
GTGAATTTTATACCAAAGTGGAAGGGATTGACATGAATCAGTTTTATGGG
TCGTTTATCGTTATCACTGGAAGAAGGATTTATGACGAGCAATCCAATAA
GTACGTGTGGACAATTATTCATCAGAAAGCTGTTCTCGCAAGGTAAAAAA
GGATTTCATTTCAACGTATATTTACTTTTAAAACAATGTTCAGACCGTTT
CTTATTGCTCCAGTATGGTTTTCGTTACGGACCGaatgtgttcatattgg
tttcggaacgtttcggagcaagaaaacggtgCAATTCCGTTCCAATGAAA
GTAGtagagcgaaaccgtttcgatctgttttgctttgtaacgtcttcttt
tctgacgtttcgaattttgacgttcacactggCTTCGAAACTGTATTGTT
TCGTTTCGGAatggaaccgtaacgtctgaacatggtctaagtgTGTACTA
TTTTGTCCTGCCACATGGGaaccaaaaaaatcaatacaCTCTATGAAAGG
GtaaaaaaattacgaaattCACCGGGCTGTGAACCAGGGATATATTTATA
TATATAGAAAGCTATTAAAAATATCTATACTAGACGAAAACTAAAcacat
tttttttccatttagaTGGGACAAAAGCGCATGCAAAAATTGTCAGAATC
ACAGCTCTGTTGATCTGTGCTTTTCAATGGGAAAAGTTCTTCCAGgagat
ttattgaaaaataattggaATGTTTGGTTCGTCTTTCGCAGAATGGATAA
TCACAGATTTGCTATTTTTCCTGTTGTCCCTTACTCAGATGGTAATGGAG
AAAGAGTCCCAGAGAATTCGTATCGCGAGATCAATCACTTTGTCAGAATT
TGTGAAATGCCCAGTAAGAATTGAACTGAGGTGTCCAGTATAAATTAAAC
TGTGAGGTGCCAATTATAAATTGCATTTTGAGGTGCCCATTATTGAATTA
AACTGAGGTGCCCAGTATGAATTAAACTGTGAGGTGCCAATTATAAATTG
CATTTTGAGGTGCCCATTATTGAATTAAACTGAGGTGCCCAGTATGAATT
AAATTGTGAGGTGCCCAATATGAATTAAATTATGAAGTGCCCAGTATGAA
TTAAACTGTGAGGTGCCAATTATAAATTGCATTATGAGGTGCCCAGTATA
AATTAAACTGTGAGGTGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048736-exon-scaffold_146-1491911889:277092..277373 | TCONS_00048736-exon-scaffold_146-1491911889:277092..277373 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1510915933:277092..277373 | TCONS_00048736-exon-scaffold_146-1510915933:277092..277373 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1575043694:277092..277373 | TCONS_00048736-exon-scaffold_146-1575043694:277092..277373 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1491911889:277788..278233 | TCONS_00048736-exon-scaffold_146-1491911889:277788..278233 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1510915933:277788..278233 | TCONS_00048736-exon-scaffold_146-1510915933:277788..278233 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1575043694:277788..278233 | TCONS_00048736-exon-scaffold_146-1575043694:277788..278233 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1491911889:278707..279048 | TCONS_00048736-exon-scaffold_146-1491911889:278707..279048 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1510915933:278707..279048 | TCONS_00048736-exon-scaffold_146-1510915933:278707..279048 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1575043694:278707..279048 | TCONS_00048736-exon-scaffold_146-1575043694:278707..279048 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1491911889:279230..279262 | TCONS_00048736-exon-scaffold_146-1491911889:279230..279262 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1510915933:279230..279262 | TCONS_00048736-exon-scaffold_146-1510915933:279230..279262 | Clytia hemisphaerica | exon |
| TCONS_00048736-exon-scaffold_146-1575043694:279230..279262 | TCONS_00048736-exon-scaffold_146-1575043694:279230..279262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:277092..279262 + |
Blast
The following BLAST results are available for this feature:
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