TCONS_00048741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048741
Unique NameTCONS_00048741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048741 ID=TCONS_00048741|Name=TCONS_00048741|organism=Clytia hemisphaerica|type=transcript|length=409bp
cccccccccgccggCTAATAGGCACCCGAGAGAACTGATTGGAAAAATGC
TATTGAGTTAATCGGATGAATAGTGCTCTAATTTAAACTatgatttttct
tttagaaTTGGTTCAAAGGAAAGCTCAAAAACAAGCGAAAGCCAAAATGA
GGCTATGGGTAAAGTTTTTTGAGTTAATCGGACGAGTAGTGCTCTAATTT
AAACTatgatttttcttttagaaTTGGTTCAAAGGAAAGCTCAAAAACAA
GCGAAAGCCAAAATGAGGCTATGGGTGAAGTCTTTTGAGTTAATCGGACG
AGTAGTTCTCTAATTTAAACTatgatttttcttttagaaTTGGTTCAAAG
GAAAGCTCAAAAACAAGCGAAAGCCAAAATGAGGCTATGGGTGAAGTCTT
TTGAATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_146:41843..42251-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048741 ID=TCONS_00048741|Name=TCONS_00048741|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at scaffold_146:41843..42251- (Clytia hemisphaerica)
CCCCCCCCCGCCGGCTAATAGGCACCCGAGAGAACTGATTGGAAAAATGC
TATTGAGTTAATCGGATGAATAGTGCTCTAATTTAAACTATGATTTTTCT
TTTAGAATTGGTTCAAAGGAAAGCTCAAAAACAAGCGAAAGCCAAAATGA
GGCTATGGGTAAAGTTTTTTGAGTTAATCGGACGAGTAGTGCTCTAATTT
AAACTATGATTTTTCTTTTAGAATTGGTTCAAAGGAAAGCTCAAAAACAA
GCGAAAGCCAAAATGAGGCTATGGGTGAAGTCTTTTGAGTTAATCGGACG
AGTAGTTCTCTAATTTAAACTATGATTTTTCTTTTAGAATTGGTTCAAAG
GAAAGCTCAAAAACAAGCGAAAGCCAAAATGAGGCTATGGGTGAAGTCTT
TTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030978XLOC_030978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048741-exon-scaffold_146-1575043694:41843..42251TCONS_00048741-exon-scaffold_146-1575043694:41843..42251Clytia hemisphaericaexon
TCONS_00048741-exon-scaffold_146-1510915933:41843..42251TCONS_00048741-exon-scaffold_146-1510915933:41843..42251Clytia hemisphaericaexon
TCONS_00048741-exon-scaffold_146-1491911889:41843..42251TCONS_00048741-exon-scaffold_146-1491911889:41843..42251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:41843..42251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.345964	0	0	2.6314	1.1342	1.14031	4.05665	0.149482	0.555473	1.25803	0.23628	0.235951	0.245038	0.201454	0.324287	0.133165	0.27298	0	0	0.686038	0.752907	0.20339	0.369823	0.380909	0.169976	0.972941	0	0.393775	0.601792
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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