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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048745 ID=TCONS_00048745|Name=TCONS_00048745|organism=Clytia hemisphaerica|type=transcript|length=1486bp
GTTTAAGGTCAGCGCGATTCGCTTAAATTTCGTTTTCTGTTGATTGAATA
AAATTCGCCTTACTTAATTCAGATTAAAAAGGAGAACCAAAAAAGCAGAT
ACAAAGGTTGGTCATCATCCAAATCTAAAGAGGGAGGCCCTCTATATGGT
CGGAATATGCTTTTCACTGTAAAAATTTCATGCTCAAAcacaaatattct
taaaaagtaagccttcatgagcaaaaaaacatctatctcataaaaaaatg
agtaatttggctatgatgtatgtttattaatagtgattcttatagctAAA
GATGCGCTTTTGAGccgaaaattttatttttgcaaaaatctgcttgagtc
aTCTTTATCTAATGATACCCCACTTTcgtgaaaaaaatcagaaaaaacta
atgatccaatttttcaccaagtccaaaaaccccgttttttagtctcaaat
ttgcccaaaaaaatgttttctcgcaaatcaggctccgtcacattcgaggg
tttattgTTATGCACCCTGGTGCCAaagatcagaaaaattgaaggagtct
atctcgagaaaagctggtaactaacgcaCGAACGCACGCACGAAGGAACA
tgggttaattcataggacctccaacaaggtaggtccaaaaaatagcGAAG
AAATTTTTATGCTATTATATTCTGAGAAAATGGCATTTCAGACCCCTTTT
TCATACACGTTGAACGTATTTGCATTCTTGAAACAAGGATTCAAATGCGG
TTAATCCAATTCTTCCGACAAGAGCAAGGAAGCAAAAATGCTGGCTGAGA
TTAAATATGGAGATCAAGTTGTCGCTAGCAAAATGCACCTCCAAAAGTCA
GTGGTCGTTAGAAAAGAACAGGACCGAAATCCAGCTGTTGCTAGCAAAGC
ACAACAAGAAAAGCCAGATACCACAAGCAGAGCACACCAACACAAATCCG
TTGTCGCTAGCAAATTGCCAATCGAGAAACAAGTTGTCGCCTTCAAAGGA
CAACAGCAAAAATCCGTTATCACTGCCAAAGAACAAACTCAGGTCACCGT
AGTCGGAAAATCACGAACTCAACatgccAAAAAACCGAATAACCGGAAAG
CCAAAAAGCATCGACGTGGCAATCGAAGACGAAATTGAggaaaaatatca
aatcaaattccgtataaatttataaaatatcTTCATCTTGAGCCTTgatc
aatttatttattttgcttatttttatgaTCCAcgaaaaacaagctagatg
ctgaatggaccttaCCTGATGATGGAAGTTAGATAttaataaggagaaaa
atgaaaacaatacgtcagaaaatatagcatttagcgaATATGTATGGGAA
GGGTAAGAGTTTTTTCTGATTCAAAGCTAAAGATGGTTTGGATGAATCGG
GCAGGCAAAAGAAGCGTCGAAGTGATCAAATTGATTGTTATATCCTTTAT
GGACAAAGAATACTTGGTTTAAAAAGATTTCAGTTT Run BLAST on NCBI protein sequence of TCONS_00048745-protein >TCONS_00048745-protein ID=TCONS_00048745-protein|Name=TCONS_00048745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MLAEIKYGDQVVASKMHLQKSVVVRKEQDRNPAVASKAQQEKPDTTSRAH
QHKSVVASKLPIEKQVVAFKGQQQKSVITAKEQTQVTVVGKSRTQHAKKP
NNRKAKKHRRGNRRRN Run BLAST on NCBI transcript from alignment at scaffold_146:130391..131928- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048745 ID=TCONS_00048745|Name=TCONS_00048745|organism=Clytia hemisphaerica|type=transcript|length=1538bp|location=Sequence derived from alignment at scaffold_146:130391..131928- (Clytia hemisphaerica)
GTTTAAGGTCAGCGCGATTCGCTTAAATTTCGTTTTCTGTTGATTGAATA
AAATTCGCCTTACTTAATTCAGATTAAAAAGGAGAACCAAAAAAGCAGAT
ACAAAGGTTGGTCATCATCCAAATCTAAAGAGGGAGGCCCTCTATATGGT
CGGAATATGCTTTTCACTGTAAAAATTTCATGCTCAAACACAAATATTCT
TAAAAAGTAAGCCTTCATGAGCAAAAAAACATCTATCTCATAAAAAAATG
AGTAATTTGGCTATGATGTATGTTTATTAATAGTGATTCTTATAGCTAAA
GATGCGCTTTTGAGCCGAAAATTTTATTTTTGCAAAAATCTGCTTGAGTC
ATCTTTATCTAATGATACCCCACTTTCGTGAAAAAAATCAGAAAAAACTA
ATGATCCAATTTTTCACCAAGTCCAAAAACCCCGTTTTTTAGTCTCAAAT
TTGCCCAAAAAAATGTTTTCTCGCAAATCAGGCTCCGTCACATTCGAGGG
TTTATTGTTATGCACCCTGGTGCCAAAGATCAGAAAAATTGAAGGAGTCT
ATCTCGAGAAAAGCTGGTAACTAACGCACGAACGCACGCACGAAGGAACA
TGGGTTAATTCATAGGACCTCCAACAAGGTAGGTCCAAAAAATAGCGAAG
AAATTTTTATGCTATTATATTCTGAGAAAATGGCATTTCAGACCCCTTTT
TCATACACGTTGAACGTATTTGCATTCTTGAAACAAGGATTCAAATGCGG
TTAATCCAATTCTTCCGACAAGAGCAAGGAAGCAAAAATGCTGGCTGAGA
TTAAATATGGAGATCAAGTTGTCGCTAGCAAAATGCACCTCCAAAAGTCA
GTGGTCGTTAGAAAAGAACAGGACCGAAATCCAGCTGTTGCTAGCAAAGC
ACAACAAGAAAAGCCAGATACCACAAGCAGAGCACACCAACACAAATCCG
TTGTCGCTAGCAAATTGCCAATCGAGAAACAAGTTGTCGCCTTCAAAGGA
CAACAGCAAAAATCCGTTATCACTGCCAAAGAACAAACTCAGGTCACCGT
AGTCGGAAAATCACGAACTCAACATGCCAAAAAATCGAATAACCGGAAAG
CCAAAAANTGACGAAAAATCAAAACATGCCAAAAAACCGAATAACCGGAA
AGCCAAAAAGCATCGACGTGGCAATCGAAGACGAAATTGAGGAAAAATAT
CAAATCAAATTCCGTATAAATTTATAAAATATCTTCATCTTGAGCCTTGA
TCAATTTATTTATTTTGCTTATTTTTATGATCCACGAAAAACAAGCTAGA
TGCTGAATGGACCTTACCTGATGATGGAAGTTAGATATTAATAAGGAGAA
AAATGAAAACAATACGTCAGAAAATATAGCATTTAGCGAATATGTATGGG
AAGGGTAAGAGTTTTTTCTGATTCAAAGCTAAAGATGGTTTGGATGAATC
GGGCAGGCAAAAGAAGCGTCGAAGTGATCAAATTGATTGTTATATCCTTT
ATGGACAAAGAATACTTGGTTTAAAAAGATTTCAGTTT Coding sequence (CDS) from alignment at scaffold_146:130391..131928- >TCONS_00048745 ID=TCONS_00048745|Name=TCONS_00048745|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_146:130391..131928- (Clytia hemisphaerica)
ATGCCAAAAAACCGAATAACCGGAAAGCCAAAAAGCATCGACGTGGCAAT
CGAAGACGAAATTGAATGCTGGCTGAGATTAAATATGGAGATCAAGTTGT
CGCTAGCAAAATGCACCTCCAAAAGTCAGTGGTCGTTAGAAAAGAACAGG
ACCGAAATCCAGCTGTTGCTAGCAAAGCACAACAAGAAAAGCCAGATACC
ACAAGCAGAGCACACCAACACAAATCCGTTGTCGCTAGCAAATTGCCAAT
CGAGAAACAAGTTGTCGCCTTCAAAGGACAACAGCAAAAATCCGTTATCA
CTGCCAAAGAACAAACTCAGGTCACCGTAGTCGGAAAATCACGAACTCAA
CATGCCAAAAAACCGAATAACCGGAAAGCCAAAAAGCATCGACGTGGCAA
TCGAAGACGAAATTGAATGCTGGCTGAGATTAAATATGGAGATCAAGTTG
TCGCTAGCAAAATGCACCTCCAAAAGTCAGTGGTCGTTAGAAAAGAACAG
GACCGAAATCCAGCTGTTGCTAGCAAAGCACAACAAGAAAAGCCAGATAC
CACAAGCAGAGCACACCAACACAAATCCGTTGTCGCTAGCAAATTGCCAA
TCGAGAAACAAGTTGTCGCCTTCAAAGGACAACAGCAAAAATCCGTTATC
ACTGCCAAAGAACAAACTCAGGTCACCGTAGTCGGAAAATCACGAACTCA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048745-exon-scaffold_146-1575043694:130856..131928 | TCONS_00048745-exon-scaffold_146-1575043694:130856..131928 | Clytia hemisphaerica | exon |
| TCONS_00048745-exon-scaffold_146-1575043694:130391..130803 | TCONS_00048745-exon-scaffold_146-1575043694:130391..130803 | Clytia hemisphaerica | exon |
| TCONS_00048745-exon-scaffold_146-1510915933:130856..131928 | TCONS_00048745-exon-scaffold_146-1510915933:130856..131928 | Clytia hemisphaerica | exon |
| TCONS_00048745-exon-scaffold_146-1510915933:130391..130803 | TCONS_00048745-exon-scaffold_146-1510915933:130391..130803 | Clytia hemisphaerica | exon |
| TCONS_00048745-exon-scaffold_146-1491911889:130856..131928 | TCONS_00048745-exon-scaffold_146-1491911889:130856..131928 | Clytia hemisphaerica | exon |
| TCONS_00048745-exon-scaffold_146-1491911889:130391..130803 | TCONS_00048745-exon-scaffold_146-1491911889:130391..130803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:130391..131928 - |
Blast
The following BLAST results are available for this feature:
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