TCONS_00048746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048746
Unique NameTCONS_00048746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2095

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048746 ID=TCONS_00048746|Name=TCONS_00048746|organism=Clytia hemisphaerica|type=transcript|length=2095bp
aaataaattcttaagAGCAAACTACTACATTGGATATTGGTACCTTTGTC
TACTCAGCAACAAAACAATATATGAagttcaacaagcacaaaactaATAT
AGCGTAGAGAATCAAAAACACAATGTTCTGGCAAAATTTGATATCCTTGG
TTCTCTTTTCAGCAATCACTTTCTCGCATGCATTATACACTGGCAAAAAG
AACTGGCGGAAATCACCATTTACGAACATTAACGAAGCACATCGAGACAT
TTGCACGGAGGTTGCAAGTTTTACGCCGAACTTCTGTTCATCTTCTGCGG
CGCAACAGTATTGTAATTGGCTTTGTgatgaacgaaaaaataaagATTAT
TTGACATGTGGTCGCAAACTggtcaaaccaaaacaaaaagtatATTCAAG
ATTCGCTGAGAACCTTCGAAGAATCATGGATGTTAACGCCCGTTATCGAA
GGGTGGTTGGGGGCGTTGGCAGTCAAGAGGGTGAATGGCCATGGCAAGTG
AGTTTGAGGATTAATGGCACACAATGGTGTGGTGGTTCAATCCTTTCAAG
TCGATTTATAATGACTGCTGCCCATTGTTTTGATGAATATATTACAAGCA
TGAAGCCAGAAGATTGGCATGTATATGCAGGCGATCATGAATTACGTACC
AAAGACCTTTTTGAACAACAAGTAAAAGTCAAGCGAGTTTTCTTCCATGA
CGAATACTTTCTGTATTTACATCAACATCGCAAAGGATCTTGGGTAACAG
CTGATAATGATATTGCCATTATGGAACTTGCACAACCAATAGATCTTCAA
CATGAGCACCGTGGTCAAGTCTGCCTCCCTGACAACAAGCAGCCAACCAG
AGACGGACAATACTGTCACGTGATTGGCTGGGGTCACACGTCTTATAAAG
GAAAACAACCAGACCATTTAATGCATGCTGTTGTCATGACGATTCCTAAC
AAGATTTGTAATCTAGAGATGGCATACAATGGTACGGTGAAGGAGAAATA
TTTGTTATGTGCAGGGTACAAAGAGGGCGGTATTGATGCCTGCAATTATG
ACAGTGGAGGTGCTATGGTCTGTCATACAAATGGTCGATGGTACGCTCAA
GGCATTGTATCGTCTGGATTTGAATGCGCAACACCGAACGCTTACGGACT
CTACACTCGAGTATCACAGGACAAGGAATGGATTATAGAAACCTTACTCA
AATCTGCTGCTCCAAAACCAATATATTAGACAACCTGCTCTCCAATGAAG
CAaaagataatgaagaacgcacaGATTTGATGAATTATCCTTTCTGGAGC
ATTGGATGTGCTCCGcagattattttttattttaggatATCATCTAGGCC
CTATTCGGCGTTATTTTTTCGTCACTAAAGTAATCAGGGCCGTCTTAAAG
GATCGGAATCacagatttttgtaaagtttgaagggctagatgttgtgctt
taaggctcttccaagcaaaaaaaagtgaatatcgcaaaaatattgctgct
attgttttcgatgACCCGCGAaacttcttattggtcaagcactaaaattc
tattgtaatgtcacgtgacctaggtaggatttcctagcctcggcacactt
ttccaGCGAAAGCATGACATCTAGTCCtcaggctttataaatctttgatc
ggaattAAATTAGGGCGAGTCATTGATTTCTCCTCTGAAACATTGAATGT
GGTCCGCAGAGTCTTTATACTCAGACCGTTCCTTTTTCATGGTTCCCTCG
GAGAGGAGAGaacaacccagctggcacacaacgttgtttcaacgtttatt
taacgttcacaacgtccataaaacgttagatgaacgtcgaaacaacgttg
tgtgccagcttggaaGTCTTGAATACCTTGATAACTCGATTACTTTCATC
ACTTACTTGGTGGAATGAATGTTAACAGAAGATAATATTcatattgaatt
tgaaaatttttagttgATGTTTCGTGTATTTGGGTAGATAGTCGCTATTG
AATTAGCAGAtctcagtagcgtggtggggtGATCAAAATTGGGGCAACTT
GGGAGAGCGGAGGCAATTTTCGAAAGTTGGGATTTTGGCGTCCCT
Run BLAST on NCBI

protein sequence of TCONS_00048746-protein

>TCONS_00048746-protein ID=TCONS_00048746-protein|Name=TCONS_00048746-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MFWQNLISLVLFSAITFSHALYTGKKNWRKSPFTNINEAHRDICTEVASF
TPNFCSSSAAQQYCNWLCDERKNKDYLTCGRKLVKPKQKVYSRFAENLRR
IMDVNARYRRVVGGVGSQEGEWPWQVSLRINGTQWCGGSILSSRFIMTAA
HCFDEYITSMKPEDWHVYAGDHELRTKDLFEQQVKVKRVFFHDEYFLYLH
QHRKGSWVTADNDIAIMELAQPIDLQHEHRGQVCLPDNKQPTRDGQYCHV
IGWGHTSYKGKQPDHLMHAVVMTIPNKICNLEMAYNGTVKEKYLLCAGYK
EGGIDACNYDSGGAMVCHTNGRWYAQGIVSSGFECATPNAYGLYTRVSQD
KEWIIETLLKSAAPKPIY
Run BLAST on NCBI

transcript from alignment at scaffold_146:157771..164030-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048746 ID=TCONS_00048746|Name=TCONS_00048746|organism=Clytia hemisphaerica|type=transcript|length=6260bp|location=Sequence derived from alignment at scaffold_146:157771..164030- (Clytia hemisphaerica)
AAATAAATTCTTAAGAGCAAACTACTACATTGGATATTGGTACCTTTGGT
GAGTGCTTTCAGAATCATAAAAACGGAATGGAAACGAGTTTGCTTTAAAT
ATTGCAATCAAGATTCTGTGATAAAGTTTCTCAAAGATATTTACGATTGA
TTTATTTTCTTTCACTAATAGTCTACTCAGCAACAAAACAATATATGAAG
TTCAACAAGCACAAAACTAATATAGCGTAGAGAATCAAAAACACAATGTT
CTGGCAAAATTTGATATCCTTGGTTCTCTTTTCAGGTAGGTACAAACCAA
CAGGAATGACTACGGGGTGGTACAGTCACTTTCAGTCGGGGTTGTGTGTG
GACGGCATTTGTCGTTCTTTGTGAAATTTTTCGTTCTTTTTGTCTTTTTT
TATGATTCTTTAGATAAACACTAAGCTAAGAGAAAACTACAATTGATCCT
CCCGCTCTTTCATACCGATTGTAAAGTAAAGTGTCCGCTAAAGTGAGTTT
GATGATTAGTCATGTTGGAGCAATGAATAAAAGGGCGGATGGGTGGCCGG
TTGGTCGGGCGGTTGGCTCAAATAGGTGCTGATTTGGAGACTAAGGTGTC
AGGAAGATGATTAGGCTGCACGCAGGACGCCTCCCCTCTAATATGTTTTG
ATACTGTAGGGGAGTTTTAAACCATGTTCACATGTTACAGTTCCGTTTCG
CTCCGATATGATTTCCGTTACGGATCGAGTGTGGTCATATTGGTTTCGGA
ACGTTTCAGAGTAAGAAAACGGAGCAGTTCCGTTCCGATGAAAAAAGTGG
AGCGAAACTGTTTCGATCTGTTTTGCTTTGTAACGTTTTCTTTTTTGACG
TTTCGAATTTTGACGTTCACACTTGTTTCGGAACCGTTTTGACGTTCACA
CTTGGAGCAAAACGGAACAGTAACGTCTTATACATGATAAGCATCCAAAT
TTTTCTTAGCAACGAAAAACTTTTCATTGTCAAAGACCCAGCGAAGATGG
GAGACTAGGGAGACTTCAGCCTCCCCACTTTTGAGCTAATGAGATTTTTT
TTATCCTTCAGCCTCACCACTTTAACAGTTGTTTTATCGGGCCTGATTGT
CACCACAACTGCCTCGAATAGGAAAAAATCTCCCGGATAGGTAGAATCCT
TCCATATCAAGAAGTCCAATTGACTCTAGCTAAAAAAGTGACATTGACTT
TCTTATATGTCAACCTCGATTTTATTCATGATACTCATGATGTAATATTT
TGTTCGAAAGTACCCAAAAAATAGCCCGGGTGTTTGCCACTAATTTTGAG
TTTAGAAAACGCCGGGCTATATTGGGTGCTTCTGTATAAAAGATTACGTC
ATGAATATCATGATCTCGCATCTCTTCTCTTTCTTCATCTCTTCACAATC
TAGCAATCACTTTCTCGCATGCATTATACACTGGCAAAAAGAACTGGCGG
AAATCACCATTTACGAACATTAACGAAGCACATCGAGACATTTGCACGGA
GGTTGCAAGTTTTACGCCGAACTTCTGTTCATCTTCTGCGGCGCAACAGT
ATTGTAATTGGCTTTGTGATGAACGAAAAAATAAAGGTATAAATTCTTGA
CTAGACATCTCTAATCTTTTTAACTTAAGATAGATAATCGCAGACTTTTA
TAGTCTTTCGATTGTTTTTCGATTGTTCAAGAATATAAAGGTTGACCGTG
CTAGTAGCGTCTAATGGAGTTTATATGAGTTTAGATTTATGAATCACAAG
GGGAAAAACTGAACTGTTTATAGATGGAGTCGATATTTTACGTGGATAGT
CCAGTAATCTAGGACTTTTAGAAAGTCTTTTGATTGTTTTCACTGTTTAT
TCGCGAGAATAGATTTTGTATACCTTCTATGACTTATCAAATAAAAATAG
GAATTTACGGCCAGACGGTTCGGCAATGTAAGAATTGAACGGAACATTTG
GAAGAAGCGATATATTGAACGTAGAGCCTGTAGATCAAGACACCTTAACC
TCTCGGCCATTGCAATGGACCTATCATAAAACAACGGTGTCTGAAGGGGG
ATTAACCACTCAAAAAATACACGTACACTTTTTTTCGATGAGTTTACACC
CTCGGTATCTAACATCCAGAGCCCGTTGCTCCACTACTGGTGAAACTGGT
GAAACAGCGTATAGGGGTCTTTCGGCTATAGATATTACTTAATTGAGAAT
CCGTGAAACTGGTGAAACAGCTTAGAGGGGTCTATTGGCTATAGTTATAG
ATATTACTTGAGAATCCGTGAAACTGGTGAAACACTTTAGAGAAGAATAT
CTGGCTAAAAAAGTTCGTCGCTAATTATCCACCAAATACTTAGAAAAGTT
CGTCATTTTCAGTCCATGGTATATTGCAAACTTGCCTCTTTAATCTACAG
ATTATTTGACATGTGGTCGCAAACTGGTCAAACCAAAACAAAAAGTATAT
TCAAGATTCGCTGAGAACCTTCGAAGAATCATGGATGTTAACGCCCGTTA
TCGAAGGGTGGTTGGGGGCGTTGGCAGTCAAGAGGGTGAATGGCCATGGC
AAGTGAGTTTGAGGATTAATGGCACACAATGGTGTGGTGGTTCAATCCTT
TCAAGTCGATTTATAATGACTGCTGCCCATTGTTTTGGTAAGTGCCGACG
TTTATTTTAACGGCTATCATATCACATCCAACGCCCATTTTAAAAAATGC
TGTTTTAACTTTCTTCTCTTTACACTACAATGCAACGACTTCAAAAATAA
GCCCCTTTGATTTTGACGTCAATTCACGTTTGCTAGGCCTTAGATTTAGA
ACGCCATGCATTTTAAACTTTTCAAGGGTGCAACTTTCTAGAAATAAGAG
TATTAATGCATTTTTCAAAATCAGAGTCATTCAATGCATATCCAGAGTCT
CTGTAATAATTCCATGGTATAGAAGTGTCTTTCGGGTTTGAAGAATTACT
GAACTCAGCTAGGAATGGATATTTTAAAAGTAAATCAGTGAAGCAGGGTT
GTAAAACTCTATACTCCTCTACCTTGATAAGATTCTTTTGTAATCCATAA
CATATTCGTTCTCTCTTCCTCCAGATGAATATATTACAAGCATGAAGCCA
GAAGATTGGCATGTATATGCAGGCGATCATGAATTACGTACCAAAGACCT
TTTTGAACAACAAGTAAAAGTCAAGCGAGTTTTCTTCCATGACGAATACT
TTCTGTATTTACATCAACATCGCAAAGGATCTTGGGTAACAGCTGATAAT
GATATTGGTATGTGTTCGTTTCCCATGATGCTTATCTTTCCAGTTGGCAT
ACAACGTTGCTTTAATGCATATCTAATGTTCGAACGAATAAACGCCATCC
TTTTTTCAAACGTTCTGATATGTTTTGATGATATAGGGGATGCACATCGT
GTATGAAATTCCCGTCCGAGAGTTGTAACAATTTTCTTAAAAAGCTTCAG
CAATCTAATGATTGTATTAATCTCTAGACATTCAAATTTATAGGTCTCTC
ATATAAAATTTACTACTCAAGTTTCTAAAACTCAAAAACACAAAGACGTG
GGTGACTCTCGGACGGGAATAGTTTACACCATACGCATCCACTATATCAA
AGGGATGCGTGCAGCCGGCAAAAAAATTTGCTTCTGTCTCATTAATTCAT
CGGGGGTATTCCCCTCATTTTTCCAAAGGGTTTGGAAATGAATGAAGGGT
GACGTAAAATAAGGGTAGAAAAAAACACCCTTCGACACCCTTATTTTGAT
ACAAAGAATTCTTAAAACTAATTTCGAATTTGCGTTTACAGCCATTATGG
AACTTGCACAACCAATAGATCTTCAACATGAGCACCGTGGTCAAGTCTGC
CTCCCTGACAACAAGCAGCCAACCAGAGACGGACAATACTGTCACGTGAT
TGGCTGGGGTCACACGTCTTATAAAGGAAAACAACCAGACCATTTAATGC
ATGCTGTTGTCATGACGATTCCTAACAAGATTTGTAATCTAGGTATGTTT
ATACTCATTCTTCTAGACGATATTATCGACCGTTAAAGTGATAGTCGGCG
GGAAAATATGGAGGTATGGTGTTGTGGTAGTATACGGAAAAAAATTAGTT
GTAGAGTTTTGAAGAAACAGAGACTAAAACAAGCAAACTCTACCGGCTAT
AAACTCCTTTCGGCAAAAAAACTCGTTTGCGAATTTCTTAGATAGTGATT
TGTCTTAGACTAGAGCATAGTCTATCATTCTCCCAACTAGCCCAAGATAA
ATCCAGTTATGGAAACAACTTTGTAATTCATGATATTGAAATCGTCATGC
CGTATAATTTTTTTCATGAAGACCCTCATTTTGCTAGTCGTGGCAAATTC
AAGCTAGAGAAAGATTGCTTAATTTGCCCTTGAGGAAAATTTAAAATATG
CCATTATTGGCAAGATATATAGAAAATCTTTTTTTGTTGAACACATTTGC
AACCACGTGATACAATCTTTGGGTTTTCGTTCCCTAGTTCCCAGTTTTCC
CATAGACATAAAATTTTGACGTAATTTCTTGCTGGTAAACTACTCGATCA
AATAATACACGATTTTGTGACTCTCCTATATTTTCAGAGATGGCATACAA
TGGTACGGTGAAGGAGAAATATTTGTTATGTGCAGGGTACAAAGAGGGCG
GTATTGATGCCTGCAATTATGACAGTGGAGGTGCTATGGTCTGTCATACA
AATGGTATGTTATAATAACGTCCATCTGACATCCATAGAACGTTAGATGA
ACGTTAGATGAACGTTAAAACAAAGCTGTGTTAGAGAAGCATTGTCTCTG
TGTACAGTGTGTCCGAGACAAATTTTAAATTTTTTCAGCTTTTTTTCCGA
GACACAATGTAAACCAGGCTTTATGACGTTCGTCTGGATAACATTGAAAA
TCATTTATTACATTACGAAAACTATAGAACAGAATGCTAAAAATTACAAA
CATCTTTAGCAAAATTTTGACTACTTTAGCACATTTCTTATGTTTGCTGA
AAGGTTCTGGATCATGTGCATTTGAAGATTTTGTAAGATTCTGGAAAAGA
GAATTATCAATAGCCACTGGCAACCTCGACCTAGAGTCTACTTCTACTTA
GACTCTGAACTTCTTTGCTTTCTGTTAATTTTGTCATCAAAGCATAGAGT
CCAGTAAAGTATCATTTATTAGCGCAACTCAGTCCATAAATACCCCCCGG
GTGCTGATCACCCAATGCTCCTATGACTTTCTTTGCATTCTATTGTAGGT
CGATGGTACGCTCAAGGCATTGTATCGTCTGGATTTGAATGCGCAACACC
GAACGCTTACGGACTCTACACTCGAGTATCACAGGACAAGGAATGGATTA
TAGAAACCTTACTCAAATCTGCTGCTCCAAAACCAATATATTAGACAACC
TGCTCTCCAATGAAGCAAAAGATAATGAAGAACGCACAGATTTGATGAAT
TATCCTTTCTGGAGCATTGGATGTGCTCCGCAGATTATTTTTTATTTTAG
GATATCATCTAGGCCCTATTCGGCGTTATTTTTTCGTCACTAAAGTAATC
AGGGCCGTCTTAAAGGATCGGAATCACAGATTTTTGTAAAGTTTGAAGGG
CTAGATGTTGTGCTTTAAGGCTCTTCCAAGCAAAAAAAAGTGAATATCGC
AAAAATATTGCTGCTATTGTTTTCGATGACCCGCGAAACTTCTTATTGGT
CAAGCACTAAAATTCTATTGTAATGTCACGTGACCTAGGTAGGATTTCCT
AGCCTCGGCACACTTTTCCAGCGAAAGCATGACATCTAGTCCTCAGGCTT
TATAAATCTTTGATCGGAATTAAATTAGGGCGAGTCATTGATTTCTCCTC
TGAAACATTGAATGTGGTCCGCAGAGTCTTTATACTCAGACCGTTCCTTT
TTCATGGTTCCCTCGGAGAGGAGAGAACAACCCAGCTGGCACACAACGTT
GTTTCAACGTTTATTTAACGTTCACAACGTCCATAAAACGTTAGATGAAC
GTCGAAACAACGTTGTGTGCCAGCTTGGAAGTCTTGAATACCTTGATAAC
TCGATTACTTTCATCACTTACTTGGTGGAATGAATGTTAACAGAAGATAA
TATTCATATTGAATTTGAAAATTTTTAGTTGATGTTTCGTGTATTTGGGT
AGATAGTCGCTATTGAATTAGCAGATCTCAGTAGCGTGGTGGGGTGATCA
AAATTGGGGCAACTTGGGAGAGCGGAGGCAATTTTCGAAAGTTGGGATTT
TGGCGTCCCT

Coding sequence (CDS) from alignment at scaffold_146:157771..164030-

>TCONS_00048746 ID=TCONS_00048746|Name=TCONS_00048746|organism=Clytia hemisphaerica|type=CDS|length=7749bp|location=Sequence derived from alignment at scaffold_146:157771..164030- (Clytia hemisphaerica)
GTCGATGGTACGCTCAAGGCATTGTATCGTCTGGATTTGAATGCGCAACA
CCGAACGCTTACGGACTCTACACTCGAGTATCACAGGACAAGGAATGGAT
TATAGAAACCTTACTCAAATCTGCTGCTCCAAAACCAATATATTAGAGAT
GGCATACAATGGTACGGTGAAGGAGAAATATTTGTTATGTGCAGGGTACA
AAGAGGGCGGTATTGATGCCTGCAATTATGACAGTGGAGGTGCTATGGTC
TGTCATACAAATGCCATTATGGAACTTGCACAACCAATAGATCTTCAACA
TGAGCACCGTGGTCAAGTCTGCCTCCCTGACAACAAGCAGCCAACCAGAG
ACGGACAATACTGTCACGTGATTGGCTGGGGTCACACGTCTTATAAAGGA
AAACAACCAGACCATTTAATGCATGCTGTTGTCATGACGATTCCTAACAA
GATTTGTAATCTAGATGAATATATTACAAGCATGAAGCCAGAAGATTGGC
ATGTATATGCAGGCGATCATGAATTACGTACCAAAGACCTTTTTGAACAA
CAAGTAAAAGTCAAGCGAGTTTTCTTCCATGACGAATACTTTCTGTATTT
ACATCAACATCGCAAAGGATCTTGGGTAACAGCTGATAATGATATTGATT
ATTTGACATGTGGTCGCAAACTGGTCAAACCAAAACAAAAAGTATATTCA
AGATTCGCTGAGAACCTTCGAAGAATCATGGATGTTAACGCCCGTTATCG
AAGGGTGGTTGGGGGCGTTGGCAGTCAAGAGGGTGAATGGCCATGGCAAG
TGAGTTTGAGGATTAATGGCACACAATGGTGTGGTGGTTCAATCCTTTCA
AGTCGATTTATAATGACTGCTGCCCATTGTTTTGCAATCACTTTCTCGCA
TGCATTATACACTGGCAAAAAGAACTGGCGGAAATCACCATTTACGAACA
TTAACGAAGCACATCGAGACATTTGCACGGAGGTTGCAAGTTTTACGCCG
AACTTCTGTTCATCTTCTGCGGCGCAACAGTATTGTAATTGGCTTTGTGA
TGAACGAAAAAATAAAGATGTTCTGGCAAAATTTGATATCCTTGGTTCTC
TTTTCAGGTCGATGGTACGCTCAAGGCATTGTATCGTCTGGATTTGAATG
CGCAACACCGAACGCTTACGGACTCTACACTCGAGTATCACAGGACAAGG
AATGGATTATAGAAACCTTACTCAAATCTGCTGCTCCAAAACCAATATAT
TAGAGATGGCATACAATGGTACGGTGAAGGAGAAATATTTGTTATGTGCA
GGGTACAAAGAGGGCGGTATTGATGCCTGCAATTATGACAGTGGAGGTGC
TATGGTCTGTCATACAAATGCCATTATGGAACTTGCACAACCAATAGATC
TTCAACATGAGCACCGTGGTCAAGTCTGCCTCCCTGACAACAAGCAGCCA
ACCAGAGACGGACAATACTGTCACGTGATTGGCTGGGGTCACACGTCTTA
TAAAGGAAAACAACCAGACCATTTAATGCATGCTGTTGTCATGACGATTC
CTAACAAGATTTGTAATCTAGATGAATATATTACAAGCATGAAGCCAGAA
GATTGGCATGTATATGCAGGCGATCATGAATTACGTACCAAAGACCTTTT
TGAACAACAAGTAAAAGTCAAGCGAGTTTTCTTCCATGACGAATACTTTC
TGTATTTACATCAACATCGCAAAGGATCTTGGGTAACAGCTGATAATGAT
ATTGATTATTTGACATGTGGTCGCAAACTGGTCAAACCAAAACAAAAAGT
ATATTCAAGATTCGCTGAGAACCTTCGAAGAATCATGGATGTTAACGCCC
GTTATCGAAGGGTGGTTGGGGGCGTTGGCAGTCAAGAGGGTGAATGGCCA
TGGCAAGTGAGTTTGAGGATTAATGGCACACAATGGTGTGGTGGTTCAAT
CCTTTCAAGTCGATTTATAATGACTGCTGCCCATTGTTTTGCAATCACTT
TCTCGCATGCATTATACACTGGCAAAAAGAACTGGCGGAAATCACCATTT
ACGAACATTAACGAAGCACATCGAGACATTTGCACGGAGGTTGCAAGTTT
TACGCCGAACTTCTGTTCATCTTCTGCGGCGCAACAGTATTGTAATTGGC
TTTGTGATGAACGAAAAAATAAAGATGTTCTGGCAAAATTTGATATCCTT
GGTTCTCTTTTCAGGTCGATGGTACGCTCAAGGCATTGTATCGTCTGGAT
TTGAATGCGCAACACCGAACGCTTACGGACTCTACACTCGAGTATCACAG
GACAAGGAATGGATTATAGAAACCTTACTCAAATCTGCTGCTCCAAAACC
AATATATTAGAGATGGCATACAATGGTACGGTGAAGGAGAAATATTTGTT
ATGTGCAGGGTACAAAGAGGGCGGTATTGATGCCTGCAATTATGACAGTG
GAGGTGCTATGGTCTGTCATACAAATGCCATTATGGAACTTGCACAACCA
ATAGATCTTCAACATGAGCACCGTGGTCAAGTCTGCCTCCCTGACAACAA
GCAGCCAACCAGAGACGGACAATACTGTCACGTGATTGGCTGGGGTCACA
CGTCTTATAAAGGAAAACAACCAGACCATTTAATGCATGCTGTTGTCATG
ACGATTCCTAACAAGATTTGTAATCTAGATGAATATATTACAAGCATGAA
GCCAGAAGATTGGCATGTATATGCAGGCGATCATGAATTACGTACCAAAG
ACCTTTTTGAACAACAAGTAAAAGTCAAGCGAGTTTTCTTCCATGACGAA
TACTTTCTGTATTTACATCAACATCGCAAAGGATCTTGGGTAACAGCTGA
TAATGATATTGATTATTTGACATGTGGTCGCAAACTGGTCAAACCAAAAC
AAAAAGTATATTCAAGATTCGCTGAGAACCTTCGAAGAATCATGGATGTT
AACGCCCGTTATCGAAGGGTGGTTGGGGGCGTTGGCAGTCAAGAGGGTGA
ATGGCCATGGCAAGTGAGTTTGAGGATTAATGGCACACAATGGTGTGGTG
GTTCAATCCTTTCAAGTCGATTTATAATGACTGCTGCCCATTGTTTTGCA
ATCACTTTCTCGCATGCATTATACACTGGCAAAAAGAACTGGCGGAAATC
ACCATTTACGAACATTAACGAAGCACATCGAGACATTTGCACGGAGGTTG
CAAGTTTTACGCCGAACTTCTGTTCATCTTCTGCGGCGCAACAGTATTGT
AATTGGCTTTGTGATGAACGAAAAAATAAAGATGTTCTGGCAAAATTTGA
TATCCTTGGTTCTCTTTTCAGGTCGATGGTACGCTCAAGGCATTGTATCG
TCTGGATTTGAATGCGCAACACCGAACGCTTACGGACTCTACACTCGAGT
ATCACAGGACAAGGAATGGATTATAGAAACCTTACTCAAATCTGCTGCTC
CAAAACCAATATATTAGAGATGGCATACAATGGTACGGTGAAGGAGAAAT
ATTTGTTATGTGCAGGGTACAAAGAGGGCGGTATTGATGCCTGCAATTAT
GACAGTGGAGGTGCTATGGTCTGTCATACAAATGCCATTATGGAACTTGC
ACAACCAATAGATCTTCAACATGAGCACCGTGGTCAAGTCTGCCTCCCTG
ACAACAAGCAGCCAACCAGAGACGGACAATACTGTCACGTGATTGGCTGG
GGTCACACGTCTTATAAAGGAAAACAACCAGACCATTTAATGCATGCTGT
TGTCATGACGATTCCTAACAAGATTTGTAATCTAGATGAATATATTACAA
GCATGAAGCCAGAAGATTGGCATGTATATGCAGGCGATCATGAATTACGT
ACCAAAGACCTTTTTGAACAACAAGTAAAAGTCAAGCGAGTTTTCTTCCA
TGACGAATACTTTCTGTATTTACATCAACATCGCAAAGGATCTTGGGTAA
CAGCTGATAATGATATTGATTATTTGACATGTGGTCGCAAACTGGTCAAA
CCAAAACAAAAAGTATATTCAAGATTCGCTGAGAACCTTCGAAGAATCAT
GGATGTTAACGCCCGTTATCGAAGGGTGGTTGGGGGCGTTGGCAGTCAAG
AGGGTGAATGGCCATGGCAAGTGAGTTTGAGGATTAATGGCACACAATGG
TGTGGTGGTTCAATCCTTTCAAGTCGATTTATAATGACTGCTGCCCATTG
TTTTGCAATCACTTTCTCGCATGCATTATACACTGGCAAAAAGAACTGGC
GGAAATCACCATTTACGAACATTAACGAAGCACATCGAGACATTTGCACG
GAGGTTGCAAGTTTTACGCCGAACTTCTGTTCATCTTCTGCGGCGCAACA
GTATTGTAATTGGCTTTGTGATGAACGAAAAAATAAAGATGTTCTGGCAA
AATTTGATATCCTTGGTTCTCTTTTCAGGTCGATGGTACGCTCAAGGCAT
TGTATCGTCTGGATTTGAATGCGCAACACCGAACGCTTACGGACTCTACA
CTCGAGTATCACAGGACAAGGAATGGATTATAGAAACCTTACTCAAATCT
GCTGCTCCAAAACCAATATATTAGAGATGGCATACAATGGTACGGTGAAG
GAGAAATATTTGTTATGTGCAGGGTACAAAGAGGGCGGTATTGATGCCTG
CAATTATGACAGTGGAGGTGCTATGGTCTGTCATACAAATGCCATTATGG
AACTTGCACAACCAATAGATCTTCAACATGAGCACCGTGGTCAAGTCTGC
CTCCCTGACAACAAGCAGCCAACCAGAGACGGACAATACTGTCACGTGAT
TGGCTGGGGTCACACGTCTTATAAAGGAAAACAACCAGACCATTTAATGC
ATGCTGTTGTCATGACGATTCCTAACAAGATTTGTAATCTAGATGAATAT
ATTACAAGCATGAAGCCAGAAGATTGGCATGTATATGCAGGCGATCATGA
ATTACGTACCAAAGACCTTTTTGAACAACAAGTAAAAGTCAAGCGAGTTT
TCTTCCATGACGAATACTTTCTGTATTTACATCAACATCGCAAAGGATCT
TGGGTAACAGCTGATAATGATATTGATTATTTGACATGTGGTCGCAAACT
GGTCAAACCAAAACAAAAAGTATATTCAAGATTCGCTGAGAACCTTCGAA
GAATCATGGATGTTAACGCCCGTTATCGAAGGGTGGTTGGGGGCGTTGGC
AGTCAAGAGGGTGAATGGCCATGGCAAGTGAGTTTGAGGATTAATGGCAC
ACAATGGTGTGGTGGTTCAATCCTTTCAAGTCGATTTATAATGACTGCTG
CCCATTGTTTTGCAATCACTTTCTCGCATGCATTATACACTGGCAAAAAG
AACTGGCGGAAATCACCATTTACGAACATTAACGAAGCACATCGAGACAT
TTGCACGGAGGTTGCAAGTTTTACGCCGAACTTCTGTTCATCTTCTGCGG
CGCAACAGTATTGTAATTGGCTTTGTGATGAACGAAAAAATAAAGATGTT
CTGGCAAAATTTGATATCCTTGGTTCTCTTTTCAGGTCGATGGTACGCTC
AAGGCATTGTATCGTCTGGATTTGAATGCGCAACACCGAACGCTTACGGA
CTCTACACTCGAGTATCACAGGACAAGGAATGGATTATAGAAACCTTACT
CAAATCTGCTGCTCCAAAACCAATATATTAGAGATGGCATACAATGGTAC
GGTGAAGGAGAAATATTTGTTATGTGCAGGGTACAAAGAGGGCGGTATTG
ATGCCTGCAATTATGACAGTGGAGGTGCTATGGTCTGTCATACAAATGCC
ATTATGGAACTTGCACAACCAATAGATCTTCAACATGAGCACCGTGGTCA
AGTCTGCCTCCCTGACAACAAGCAGCCAACCAGAGACGGACAATACTGTC
ACGTGATTGGCTGGGGTCACACGTCTTATAAAGGAAAACAACCAGACCAT
TTAATGCATGCTGTTGTCATGACGATTCCTAACAAGATTTGTAATCTAGA
TGAATATATTACAAGCATGAAGCCAGAAGATTGGCATGTATATGCAGGCG
ATCATGAATTACGTACCAAAGACCTTTTTGAACAACAAGTAAAAGTCAAG
CGAGTTTTCTTCCATGACGAATACTTTCTGTATTTACATCAACATCGCAA
AGGATCTTGGGTAACAGCTGATAATGATATTGATTATTTGACATGTGGTC
GCAAACTGGTCAAACCAAAACAAAAAGTATATTCAAGATTCGCTGAGAAC
CTTCGAAGAATCATGGATGTTAACGCCCGTTATCGAAGGGTGGTTGGGGG
CGTTGGCAGTCAAGAGGGTGAATGGCCATGGCAAGTGAGTTTGAGGATTA
ATGGCACACAATGGTGTGGTGGTTCAATCCTTTCAAGTCGATTTATAATG
ACTGCTGCCCATTGTTTTGCAATCACTTTCTCGCATGCATTATACACTGG
CAAAAAGAACTGGCGGAAATCACCATTTACGAACATTAACGAAGCACATC
GAGACATTTGCACGGAGGTTGCAAGTTTTACGCCGAACTTCTGTTCATCT
TCTGCGGCGCAACAGTATTGTAATTGGCTTTGTGATGAACGAAAAAATAA
AGATGTTCTGGCAAAATTTGATATCCTTGGTTCTCTTTTCAGGTCGATGG
TACGCTCAAGGCATTGTATCGTCTGGATTTGAATGCGCAACACCGAACGC
TTACGGACTCTACACTCGAGTATCACAGGACAAGGAATGGATTATAGAAA
CCTTACTCAAATCTGCTGCTCCAAAACCAATATATTAGAGATGGCATACA
ATGGTACGGTGAAGGAGAAATATTTGTTATGTGCAGGGTACAAAGAGGGC
GGTATTGATGCCTGCAATTATGACAGTGGAGGTGCTATGGTCTGTCATAC
AAATGCCATTATGGAACTTGCACAACCAATAGATCTTCAACATGAGCACC
GTGGTCAAGTCTGCCTCCCTGACAACAAGCAGCCAACCAGAGACGGACAA
TACTGTCACGTGATTGGCTGGGGTCACACGTCTTATAAAGGAAAACAACC
AGACCATTTAATGCATGCTGTTGTCATGACGATTCCTAACAAGATTTGTA
ATCTAGATGAATATATTACAAGCATGAAGCCAGAAGATTGGCATGTATAT
GCAGGCGATCATGAATTACGTACCAAAGACCTTTTTGAACAACAAGTAAA
AGTCAAGCGAGTTTTCTTCCATGACGAATACTTTCTGTATTTACATCAAC
ATCGCAAAGGATCTTGGGTAACAGCTGATAATGATATTGATTATTTGACA
TGTGGTCGCAAACTGGTCAAACCAAAACAAAAAGTATATTCAAGATTCGC
TGAGAACCTTCGAAGAATCATGGATGTTAACGCCCGTTATCGAAGGGTGG
TTGGGGGCGTTGGCAGTCAAGAGGGTGAATGGCCATGGCAAGTGAGTTTG
AGGATTAATGGCACACAATGGTGTGGTGGTTCAATCCTTTCAAGTCGATT
TATAATGACTGCTGCCCATTGTTTTGCAATCACTTTCTCGCATGCATTAT
ACACTGGCAAAAAGAACTGGCGGAAATCACCATTTACGAACATTAACGAA
GCACATCGAGACATTTGCACGGAGGTTGCAAGTTTTACGCCGAACTTCTG
TTCATCTTCTGCGGCGCAACAGTATTGTAATTGGCTTTGTGATGAACGAA
AAAATAAAGATGTTCTGGCAAAATTTGATATCCTTGGTTCTCTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030982XLOC_030982Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048746-proteinTCONS_00048746-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048746-exon-scaffold_146-1575043694:163983..164030TCONS_00048746-exon-scaffold_146-1575043694:163983..164030Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1575043694:163746..163859TCONS_00048746-exon-scaffold_146-1575043694:163746..163859Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1575043694:162445..162627TCONS_00048746-exon-scaffold_146-1575043694:162445..162627Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1575043694:161394..161630TCONS_00048746-exon-scaffold_146-1575043694:161394..161630Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1575043694:160774..160956TCONS_00048746-exon-scaffold_146-1575043694:160774..160956Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1575043694:160039..160239TCONS_00048746-exon-scaffold_146-1575043694:160039..160239Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1575043694:159327..159443TCONS_00048746-exon-scaffold_146-1575043694:159327..159443Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1575043694:157771..158782TCONS_00048746-exon-scaffold_146-1575043694:157771..158782Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:163983..164030TCONS_00048746-exon-scaffold_146-1510915933:163983..164030Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:163746..163859TCONS_00048746-exon-scaffold_146-1510915933:163746..163859Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:162445..162627TCONS_00048746-exon-scaffold_146-1510915933:162445..162627Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:161394..161630TCONS_00048746-exon-scaffold_146-1510915933:161394..161630Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:160774..160956TCONS_00048746-exon-scaffold_146-1510915933:160774..160956Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:160039..160239TCONS_00048746-exon-scaffold_146-1510915933:160039..160239Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:159327..159443TCONS_00048746-exon-scaffold_146-1510915933:159327..159443Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1510915933:157771..158782TCONS_00048746-exon-scaffold_146-1510915933:157771..158782Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:163983..164030TCONS_00048746-exon-scaffold_146-1491911889:163983..164030Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:163746..163859TCONS_00048746-exon-scaffold_146-1491911889:163746..163859Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:162445..162627TCONS_00048746-exon-scaffold_146-1491911889:162445..162627Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:161394..161630TCONS_00048746-exon-scaffold_146-1491911889:161394..161630Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:160774..160956TCONS_00048746-exon-scaffold_146-1491911889:160774..160956Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:160039..160239TCONS_00048746-exon-scaffold_146-1491911889:160039..160239Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:159327..159443TCONS_00048746-exon-scaffold_146-1491911889:159327..159443Clytia hemisphaericaexon
TCONS_00048746-exon-scaffold_146-1491911889:157771..158782TCONS_00048746-exon-scaffold_146-1491911889:157771..158782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:157771..164030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.743155	0.601992	0.753631	0.698412	5.18386	5.44089	44.9265	50.2737	79.5815	78.1152	55.7337	61.8122	4.52169	3.28155	0.214988	0.357138	3.75597	3.22605	4.48607	8.19778	1.5319	1.66443	3.60027	6.3575	3.91512	4.06555	1.2034	0.34664	0.258317	0.414829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00048746 vs. Swiss-Prot (Human)
Match: HEPS (Serine protease hepsin OS=Homo sapiens GN=HPN PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.570e-49
Identity = 107/264 (40.53%), Postives = 143/264 (54.17%), Query Frame = 3 
Query:  417 RRIMDVNARYRRVVGGVGSQEGEWPWQVSLRINGTQWCGGSILSSRFIMTAAHCFDEYITSMKPEDWHVYAGDHELRTKDLFEQQVKVKRVFFHDEYFLYLHQHRKGSWVTADNDIAIMELAQPIDLQHEHRGQVCLPDNKQPTRDGQYCHVIGWGHTSYKGKQPDHLMHAVVMTIPNKICNLEMAYNGTVKEKYLLCAGYKEGGIDACNYDSGGAMVCHTN----GRWYAQGIVSSGFECATPNAYGLYTRVSQDKEWIIETL 1196
            RR + V+    R+VGG  +  G WPWQVSLR +G   CGGS+LS  +++TAAHCF E    +    W V+AG   +        Q+ V+ V +H  Y  +   + + +     NDIA++ L+ P+ L  E+   VCLP   Q   DG+ C V GWG+T Y G+Q   L  A V  I N +CN    Y   +K K + CAGY EGGIDAC  DSGG  VC  +     RW   GIVS G  CA     G+YT+VS  +EWI + +
Sbjct:  155 RRKLPVD----RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLS--RWRVFAG--AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEEN----SNDIALVHLSSPLPLT-EYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPK-MFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 404
The following BLAST results are available for this feature:
BLAST of TCONS_00048746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HEPS2.570e-4940.53Serine protease hepsin OS=Homo sapiens GN=HPN PE=1... [more]
back to top