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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048748 ID=TCONS_00048748|Name=TCONS_00048748|organism=Clytia hemisphaerica|type=transcript|length=3375bp
GATACCCTTCATTGGTCAGTAGATTCATTTACCTTCACAAATCCTAAACA
GATTTAAGTCTGTAAAATAGACTTTTTAATGACATATGCATTATGTTTac
gacatttttcaaaaattttatcaagTCGAGCAGCAGATTGAAATCAGCAA
TCAAAGTTTTCTATTTATTAAATCTTATTTACTTTTATTGGGAAATGAAT
TGATAAAAGACACAAATGCTGTTTGTATGTATGGTATAGCTCCATTGAAt
tattttactcattttttacTTTGATTCATAGAAATTAagtatgatttcat
caaaaaactCACGTGCCTCTTCCTCTTGCAACATAACCAAACGAAAACGC
TCAGACATCAGTGAAACAAGTGAAGAAGAGACTGATACTTTAGAGCAAGA
AAATGACCTAATTTACTCAGTAAATAACCAACCGTTAATCTGGTCCCAAT
GTGAGGAGTCTGATATTCAGAAAAGACTGCGTCTCGATTGGAGTATAAAC
AACAACGGTGATGATTACCTCAATGAATTTCTTTCATCGTCAACTGCAAC
AGGAGCTCAAGAAGATACTTCAGAAGGACAAGTTAACATAGTGAATAGAT
CAAATTGTGTGACACTTGCAAACAAAATAACCGTTGCTACAGAATGCACA
AGTTTTACAAGTGATCTAGACTTTGATTCTTTGAGTGAATACAGCTCTTC
ATCTGACGACAATTCCAATAGTAGCACTGGAGAATACAGTGAAAATAATA
CTACAAGTCAATCTTTATTTGGAACTCTATTTTCTCCTGTGTTTGCTTTT
TTGAATGGAAGTTTTGGTTCTCGTGCCACTGATACAACTTTGAAGTCATA
TATAAAGAGACCAACAAATGTACCAAAAGCAAACGAAGAAGAACATTGTT
ATACTCAGCTCACAGCATTTGCAACTCAAACATCAAAAATTGATGATTTA
GACAGTGACCAAAGTTTAAGATCACCCAAACAAGATGGATTTGATCCGTA
CTATTTTATTCGTAATTTGAAACTACCTGAAGCAGATACACAGAAAAAGA
CTGTGCTACCACTGCCCACTAGAAGAACTCCTAAAATGTGCCTTGTTCTT
GATCTAGATGAAACTCTTGTACATTGCAGCCTAACAGAACTACAGAATTA
TGATATGACTTTTACTATAGATCTTGATGACTCTACAATAACAGTATATG
TTCGGTTAAGACCTCATCTAGAAGAATTTCTGGAGAAAGTTTCCCAGTGG
TATGAAGTAATTTTGTTTACAGCCTCGCAGAGAGCTTATGCTGATAAGCT
TATTAATTTGATCGATCCGAAGCGTGCAATTTTTAGACACAGACTTTTTC
GTGAACATTGTTCTTATATTGGTGGAACTTACATCAAAGATCTCAATATT
CTTGGTCGCGATCTGCGTTACTCCATGATCGTCGATAACTCACCGCAAGC
TTTTGCGTATCACGTGTCCAACGGAATACCAATCGAATCTTGGTTTTACG
ATGAAAACGACGTTGAACTTCAATCCCTTCTTCCGTTCCTTGAGAAGCTA
GCTGAACAACAAGAAGATGTCCGCCCGCATATTCGTGATCGCTACCGCCT
TCATGAATTATTACCAACATAGGAGGGGGTGTGTAAAGGCGGTGCTTTTT
GGTTGGTTAGGAGATTGTTTTATTCGATGCAGGATTaaaaatgatatatt
ttctGGTGACGAGTTTTCTTTGGTTTATGCAAGCCTCCAACGAATAAGTC
TTGGCTTAATGACTGGTTGATGTTACTTCATATCTCAGCCATCCTCTAAT
TGTTTTAAAAGATGGCATCGTGTAGATACTTGCATCGGTTACTTTGACTG
AACCTTGTGGGAAAACTGGGATGCTTTTTTTATATTCTGATGGTTCTACA
ACTACAactatcttatataaaacacgtATATTTCTActatttgaagcaaa
ataattcgCCATCTTGGATAAAGTGACGTCACATATTAGTTTGTGAgatc
cttgaaattttgaagtcattgcagtgcgaaagaaagtttcaaaagtgaaa
accaaggtttctagactactttcagcaaagatggcggattattttgcttc
acctgccgATGCTTAGGAAACATAGCTTGTGTTTTATATATGATATTTGT
GGGTTCTACAACAACAATTGGGTTGTATTTGGTATATATTACATTTGTTT
TTGCCACGTACTTTGTTTTTACATTCATGTGTACAATTGAAAAGTGATAC
TTTTTCTTCGACTGGGTGAGAAATTATTCCCAGTTTCTTAAAGTTGTGTA
TGCAACATTTGCATTATTCAATACGTCCCTAAATGGCAGGCCCGTCTCGG
CCCGTCTCTATCCCCGGTGGCTGTGTAGCTTACATCAGTCAGTATTTTTA
TGCTCTTGGGTGTCACGTGGGAAGTACGACGAaagcttttaaataaaaat
atttttaccttttGGGTAGAAGTCATGatttctgtatatatttttccaGG
TGAACTGTTTTTGTTACATTTGTTTATTATAAGACTTgagtcatttttta
gaaattttattgctttaaattttttattttccaaattctGATTATTCTGT
ATAGCTTTTGTTTTTCAGCCGTATTTGAGATGAAGGAAGACACACCCATT
GATATCCCTTGACCCGaatatttccccttttttatcCACTCCTTTTCCAG
CTCCCTGTACCCCCCTTTATACTTTCTTATAAAATGTCGTACACTCTCGT
TAGCTCAAACGCTTGTGACGTAATTGAGTTTCGTTGCTACTTCCAGACAC
CGTcacttcaaataaacgccccgcgcccatattcagttttcaattCTTTG
GAGGGGCGTTTATAGAAGGGGTTGTTTTTCGAAGGGGTTGTTTTTCGAAG
TAATATGTTATGATGGCTTAAACCTCAACAATAGtgatattttttagatt
ttttatttttcataaattcaTATTATTAGACAGatgtttattttgtaaat
tttccaAAGGCTTTTTTCGTTGAGATTGCTTTGTTTCGATACATATTCAA
TCTTTAACGGCGCGGTCGTCATAAGAGAAGACTGGTGAAAAGTTTACAAG
TGAATTTTTTATTGCCGCGCTGCATTTTCACGGCAAACTCCCGCCAAAAT
CTATTCCATATGACAGGAATTTTCCGAGTCTTGGTAGAGTGAAAACTATT
TTTGGTATTCGAATAGCTTGACTGAATTAACGTCATCACTTCAATGCAAG
GGTATCTTTAGTTTTTCACAAGAACGCTCCTACGCTTATGTTTTCAATAC
CGTCGACGGAAAATATTTTACCAGCCCCCTCAAAAGCTAACTGCGCcgct
actcttaggttccaaataaacgggc Run BLAST on NCBI protein sequence of TCONS_00048748-protein >TCONS_00048748-protein ID=TCONS_00048748-protein|Name=TCONS_00048748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MISSKNSRASSSCNITKRKRSDISETSEEETDTLEQENDLIYSVNNQPLI
WSQCEESDIQKRLRLDWSINNNGDDYLNEFLSSSTATGAQEDTSEGQVNI
VNRSNCVTLANKITVATECTSFTSDLDFDSLSEYSSSSDDNSNSSTGEYS
ENNTTSQSLFGTLFSPVFAFLNGSFGSRATDTTLKSYIKRPTNVPKANEE
EHCYTQLTAFATQTSKIDDLDSDQSLRSPKQDGFDPYYFIRNLKLPEADT
QKKTVLPLPTRRTPKMCLVLDLDETLVHCSLTELQNYDMTFTIDLDDSTI
TVYVRLRPHLEEFLEKVSQWYEVILFTASQRAYADKLINLIDPKRAIFRH
RLFREHCSYIGGTYIKDLNILGRDLRYSMIVDNSPQAFAYHVSNGIPIES
WFYDENDVELQSLLPFLEKLAEQQEDVRPHIRDRYRLHELLPT Run BLAST on NCBI transcript from alignment at scaffold_146:213763..221297- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048748 ID=TCONS_00048748|Name=TCONS_00048748|organism=Clytia hemisphaerica|type=transcript|length=7535bp|location=Sequence derived from alignment at scaffold_146:213763..221297- (Clytia hemisphaerica)
GATACCCTTCATTGGTCAGTAGATTCATTTACCTTCACAAATCCTAAACA
GATTTAAGTCTGTAAAATAGACTTTTTAATGACATATGCATTATGTTTAC
GACATTTTTCAAAAATTTTATCAAGTCGAGCAGCAGATTGAAATCAGCAA
TCAAAGTTTTCTATTTATTAAATCTTATTTACTTTTATTGGGAAATGAAT
TGATAAAAGACACAAATGCTGTTTGTATGTATGGTATAGCTCCATTGAAT
TATTTTACTCATTTTTTACTTTGATTCATAGAAATTAAGTATGATTTCAT
CAAAAAACTCACGTGCCTCTTCCTCTTGCAACATAACCAAACGAAAACGC
TCAGACATCAGTGAAACAAGTGAAGAAGAGACTGATACTTTAGAGCAAGA
AAATGACCTAATTTACTCAGTAAATAACCAACCGTTAATCTGGTCCCAAT
GTGAGGAGTCTGATATTCAGAAAAGACTGCGTCTCGATTGGAGTATAAAC
AACAACGGTGATGATTACCTCAATGAATTTCTTTCATCGTCAACTGCAAC
AGGAGCTCAAGAAGATACTTCAGAAGGACAAGTTAACATAGTGAATAGAT
CAAATTGTGTGACACTTGCAAACAAAATAACCGTTGCTACAGAATGCACA
AGTTTTACAAGTGATCTAGACTTTGATTCTTTGAGTGAATACAGCTCTTC
ATCTGACGACAATTCCAATAGTAGCACTGGAGAATACAGTGAAAATAATA
CTACAAGTCAATCTTTATTTGGAACTCTATTTTCTCCTGTGTTTGCTTTT
TTGAATGGAAGTTTTGGTTCTCGTGCCACTGATACAACTTTGAAGTCATA
TATAAAGAGACCAACAAATGTACCAAAAGCAAACGAAGAAGAACATTGTT
ATACTCAGCTCACAGCATTTGCAACTCAAACATCAAAAATTGATGATTTA
GACAGTGACCAAAGTTTAAGATCACCCAAACAAGATGGATTTGATCCGTA
CTATTTTATTCGTAATTTGAAACTACCTGAAGCAGATACACAGAAAAAGA
CTGTGCTACCACTGCCCACTAGAAGAACTCCTAAAATGTGCCTTGTTCTT
GATCTAGATGAAACTCTTGTACATTGCAGCCTAACAGAACTACAGAATTA
TGATATGACTTTTACTATAGATCTTGATGACTCTACAATAACAGTATATG
TTCGGTTAAGACCTCATCTAGAAGAATTTCTGGAGAAAGTTTCCCAGTGG
TATGAAGTAATTTTGTTTACAGCCTCGCAGAGAGCTTATGCTGATAAGCT
TATTAATTTGATCGATCCGAAGCGTGCAATTTTTAGACACAGACTTTTTC
GTGAACATTGTTCTTATATTGGTGGAACTTACATCAAAGATCTCAATATT
CTTGGTGAGTAGCTTAATTTGAATGTTAAACTTTTTTATAAACGACTGCA
TGTAGGTGGGTGAAGAGATCTAATTTCTGGGGTAGCTAATTTTTATAGCT
GTAGGTTTCTGCCACAAAAATGTTGCACAAAATGTTCTAACTTTTATTGG
GAATATAACATAAAGTTTTGCAAAAATTAGTTTCCTTAAATTAGTAATAT
TTTTTCTATGTTTGATGTGTTTTTCTCTTTAGCAATTTAAATCAGGCATA
GGCCACATCACACATCACATCAGACACAACTTTCTACCCTCAAAAGAGTA
GTACCTCAGCTGAAGTCCCAACACTACTTACTGTCATTATGCATAAGATT
CCCCGCACTAAGATTCCAATACCATTTTTCTAGTGGAAAAGGACTCCAGG
TAGTTGAAAATTGAACTAAACACAAAATTTTTCGTACCTAGAAAAAAACA
TCGAAAAAAAGTACTTTCCAATCTCATGCCGGTTATCCCGCAAAAAATTA
GCTGAAAAGATCCCGTAAAAGTCAGTAGAATCTTAGTGTATACAAGCATG
GCATGCTGGCATGAATTATCATTTAAAAAAATCTGATACCAATTATATGT
AGCTAGCTCCTAGCGGGTATATAGTCCTAGGGACTATATTTCGGTTTAAG
TAGTGTTTTGTAATATATGTTTGTAGTGTACATGTGTATTTGTTTCGATA
AAGAAAAACAATTATTTGAAACCCTCTTTTAGTTGGGGAAAATAATATTG
TTCAGAAGGAGGCTTTTTTAATTGAGATGATATTATTTTATTATTAACAG
AAATTAATATGATAAACCCTAAAATTACCTTATTGTGGGGTAAACAATCT
TTAGAACAAATAAATTGTTTGCATACAAATGCTACTTCCTCTTAATGCAC
ACAAAGAGGAAAATCTTGTTCAAATATACAGTATAAGAATTCCATTGTTT
AGTTTCCTGTAGAGGAGACATGTATATTATCATAAGGGATTCAGTTTGTT
TACATTTTTTGTGAAGTAGAAAGTGGTTTTAAAATAACTCTCAAAACTAA
GAAAAAAATAGAGAATTTGTCCATCCTCAGGAAAAAGAAAAAAAGAGCGG
ATAGTGCAAAATCTACATCCGCTAAAATCACTCAGTACACTTGGCCTTAT
CATTACAAACGACTTCACCATTAATGAAAGGAAGATGATTAAAGATATAT
GTCAATAGGCAAAAGAAAATGAATTCAGAAAATGATGGTGCCTTTGTTTG
GTGTGTAAGCCAAAGAACCCTAGAACAAGCCTTCACCTAGTTCAAAAACC
TAAGACAAAGACAAAAACAATGGGTAGTCTGTCCATATTTTCTGATGACT
TGACGACAAATAAAGATTAAACAGTATTCTATAAATTTTGATAGATCTGT
AAAATACTGTATAATTCTATGAACTAAAAAAATTAATATCTTTATTATCA
AAAAGGTTTAATCTAATATTTATAGGTCACCAAATCCCCTCGAGAATTTA
GAAACTTAAAAATGGGAAGATTTTATAGCTTTCAATGTTTTTAAATATAT
GCAAAGTATGAAATTCAAGTCTAACTATAAAGTCAGGTAATATTTAATTT
CTTAATGAAATTGAGTTTTGTTGAATAGGTACTAATGAAGGAGGCTCTAT
CTCAACCAATATAATTTTAATTACAGTATGTCACTTGCAAAGATATTTAG
TAAATGATCATTCGTGATATTGGCCTTGTCTAGATGTTAAATATCATCAT
TAACATTCCTTTCATTTTAACAGTCATTCAGCTCAATTTTTTACAATACA
AGCATATACCATTAGTCTTCAAATGAAGCTCTTACTTTTTTTCAAAGGTC
CATTTTTGACCATCAGCTTACTTTAGAGGGCCATCAACTTTTGATCGTTT
GATCTCATCTTTTTAGAATTTTTTCAAAAGTCTATTCTAAAAAAAATTGA
CAATTGGTACGTTTTGATGCATTGTATAACATAATATAATTAACCCTTTA
ACTGCCGATGTCGGCATATCCCGACATGAGCACTTTCAATTTCTTTGCCG
ATGTCGGAATTTGCCGACATGGGTACTTTCCAAATTTAACACTTCTACAA
AGATTTTGTATTAGATGGTTTGAAATGAAAAAAGATAATAGTTAAAAGCT
TTTCTATGTTGAAAAATAACTATTCAACAATGTTCAACTCAAAATTATAG
TCCTTGGCTGATACTTCATATATTATTCAGAAAATGAAGTCAAAGTTGCT
ACCTTTTGTTCATGTCGGCATATGCCGACATCTGGCAAATAGGTCGAACC
TTCTTTTTTTCCCGTGGTAAATAGGTCGAACCTTAAAAATACGCACGGCA
GTTAAAGGGTTAAAGTGATGCAGCAGTTAAAAGATATTTAAATTAAGATT
CAAAGAAAAGTGAAGAGTGTTTTTTGGGCTAAAACTTTTCTCACTTGGTA
TAAAATTATAAAAAGTTCAAAATTTATGTGCTTCTTAGGGAGAAAGAAGC
CTGGTATTATTTGGCATTCACTTAGCTACGCTGCTGCCGTTGATGCTTCA
CTCCAACAGGCCCAAGAAAGCTTTGGAAATTTTAAAGCTTTTTAAAAAGT
TTGAGGGGGAAACCTGGGAAATCCAAATAATCTTTGTTTACAAATTGTTG
AGCTCTCAGGTAATTTAATTTTGCCTCCTTATAATAACACAATGAGTTGT
ATTTTAGGGTCTGAAATAGCTTTTTCAAATTTTCCCTCTTTAAGGCTAGC
CATAAGTCGTTTCAATGTCCCTTTGGTATAATGCTCAATAAGTATCAATT
TTTTTACAGTATCACGACTCTTGTATAAACAACTGGATTTTCACTGGATA
ATTCTATTTCTAAATTGTTTTTTTTTAACTTCCATGCTTTTCCATAAAGC
CTCAAATTCAAAACAAAAATTTTAAGTTAAAGTTTTTGATTGTCGATTTT
CCATATCATTAAGCAGTACTAGACTAGAATTGATACAGAATCCATCATAA
TAGGCATCCTACATATTGCATTGCTATATGTAGGATGAGGGCCGTGAACA
CCAGGTCTTGAAATAGCGGTCAGACATTGGACATTGTCCGACCAGAAAAT
CATAATTTTCAAGCTACAGCAACACTGATCAGACATATTGTCCGACCCAC
TTGAAATCCTTATTTCGAGCCTTGGAACACTTATACAAATAGTTAATTTT
TGCCTTAAAATGTATTAGTGGTGTCACCTAGACCTTTTCTTTGACTTTTG
AGACCACAGTTTGACCGCTTTCTCATACTAAAATTTGGGTAGTAATGACT
GCAAACAAACNAGTTTGACCGCTTTTTCATACTAAAATTTGGGTAGTAAT
GACTGCAAACAAACTGATTAGATATATATGTACAGTGGATTTTCTCGAGT
CTCTGACTCGAATGTCTTCTTAAAACTCGAACAAGTTTTATAGTCCCTTC
AGCTAAAAACGCCTTATAAACCAATCTCCATAACTCGAAATTTCCATATC
TCAAACAAATTTTTGCTCCCTGTTCATGTACAGTGGATTTTCCATAACTC
GAAATTCTCTGACTCGAATGTCTTCTTAACTCGAACAAGTTTGTAAGTCC
CTTCAGCTAAAAACACCTTATAAACCAATCTCCATAACTCGAAATTTCCA
TATCTCAAACAAATTTATGCTTCCTGTTCATGCTCGGAGTTTAGAGAGTC
CAATGTATTGCAATAATGTTTGTGTTAAGACATATTTTTCAGTCTTTAGT
TGCTTTCCTGAACGAGCATTGTCTGAACAACCCAATGATATTTTAACTTT
ACTTTCCCACAAGGAATAGGATCCTCTCCCCAAGTGCAAGTGCTCATGTT
TTCACGACCTTCAGTATTATTCTGTTCTTTTAATTCATCAGGTTGAGATT
TAAGGGTTCCCATCACCAACAATCACCAATCAATTTCATTTTGTTCTCGT
ACTTCAACACTAGTTTAAATAAAGAAAACGATTTAAGTTTCATCTCATAC
CATTCAGGATGGCAATCATCAATGAAATAAAATGTTCTATAAAAATCTAC
TATTTAATATCTTCAAAATATTTTCTGACGTCAATTCAAAATAAAAATTA
TTCGAAAGTCTCGAGGAGTATTTCAACAGGCCATTCTATGAGTTTGTTTA
TTTTATTTCAACAGGTCGCGATCTGCGTTACTCCATGATCGTCGATAACT
CACCGCAAGCTTTTGCGTATCACGTGTCCAACGGAATACCAATCGAATCT
TGGTTTTACGATGAAAACGACGTTGAACTTCAATCCCTTCTTCCGTTCCT
TGAGAAGCTAGCTGAACAACAAGAAGATGTCCGCCCGCATATTCGTGATC
GCTACCGCCTTCATGAATTATTACCAACATAGGAGGGGGTGTGTAAAGGC
GGTGCTTTTTGGTTGGTTAGGAGATTGTTTTATTCGATGCAGGATTAAAA
ATGATATATTTTCTGGTGACGAGTTTTCTTTGGTTTATGCAAGCCTCCAA
CGAATAAGTCTTGGCTTAATGACTGGTTGATGTTACTTCATATCTCAGCC
ATCCTCTAATTGTTTTAAAAGATGGCATCGTGTAGATACTTGCATCGGTT
ACTTTGACTGAACCTTGTGGGAAAACTGGGATGCTTTTTTTATATTCTGA
TGGTTCTACAACTACAACTATCTTATATAAAACACGTATATTTCTACTAT
TTGAAGCAAAATAATTCGCCATCTTGGATAAAGTGACGTCACATATTAGT
TTGTGAGATCCTTGAAATTTTGAAGTCATTGCAGTGCGAAAGAAAGTTTC
AAAAGTGAAAACCAAGGTTTCTAGACTACTTTCAGCAAAGATGGCGGATT
ATTTTGCTTCACCTGCCGATGCTTAGGAAACATAGCTTGTGTTTTATATA
TGATATTTGTGGGTTCTACAACAACAATTGGGTTGTATTTGGTATATATT
ACATTTGTTTTTGCCACGTACTTTGTTTTTACATTCATGTGTACAATTGA
AAAGTGATACTTTTTCTTCGACTGGGTGAGAAATTATTCCCAGTTTCTTA
AAGTTGTGTATGCAACATTTGCATTATTCAATACGTCCCTAAATGGCAGG
CCCGTCTCGGCCCGTCTCTATCCCCGGTGGCTGTGTAGCTTACATCAGTC
AGTATTTTTATGCTCTTGGGTGTCACGTGGGAAGTACGACGAAAGCTTTT
AAATAAAAATATTTTTACCTTTTGGGTAGAAGTCATGATTTCTGTATATA
TTTTTCCAGGTGAACTGTTTTTGTTACATTTGTTTATTATAAGACTTGAG
TCATTTTTTAGAAATTTTATTGCTTTAAATTTTTTATTTTCCAAATTCTG
ATTATTCTGTATAGCTTTTGTTTTTCAGCCGTATTTGAGATGAAGGAAGA
CACACCCATTGATATCCCTTGACCCGAATATTTCCCCTTTTTTATCCACT
CCTTTTCCAGCTCCCTGTACCCCCCTTTATACTTTCTTATAAAATGTCGT
ACACTCTCGTTAGCTCAAACGCTTGTGACGTAATTGAGTTTCGTTGCTAC
TTCCAGACACCGTCACTTCAAATAAACGCCCCGCGCCCATATTCAGTTTT
CAATTCTTTGGAGGGGCGTTTATAGAAGGGGTTGTTTTTCGAAGGGGTTG
TTTTTCGAAGTAATATGTTATGATGGCTTAAACCTCAACAATAGTGATAT
TTTTTAGATTTTTTATTTTTCATAAATTCATATTATTAGACAGATGTTTA
TTTTGTAAATTTTCCAAAGGCTTTTTTCGTTGAGATTGCTTTGTTTCGAT
ACATATTCAATCTTTAACGGCGCGGTCGTCATAAGAGAAGACTGGTGAAA
AGTTTACAAGTGAATTTTTTATTGCCGCGCTGCATTTTCACGGCAAACTC
CCGCCAAAATCTATTCCATATGACAGGAATTTTCCGAGTCTTGGTAGAGT
GAAAACTATTTTTGGTATTCGAATAGCTTGACTGAATTAACGTCATCACT
TCAATGCAAGGGTATCTTTAGTTTTTCACAAGAACGCTCCTACGCTTATG
TTTTCAATACCGTCGACGGAAAATATTTTACCAGCCCCCTCAAAAGCTAA
CTGCGCCGCTACTCTTAGGTTCCAAATAAACGGGC Coding sequence (CDS) from alignment at scaffold_146:213763..221297- >TCONS_00048748 ID=TCONS_00048748|Name=TCONS_00048748|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_146:213763..221297- (Clytia hemisphaerica)
GTCGCGATCTGCGTTACTCCATGATCGTCGATAACTCACCGCAAGCTTTT
GCGTATCACGTGTCCAACGGAATACCAATCGAATCTTGGTTTTACGATGA
AAACGACGTTGAACTTCAATCCCTTCTTCCGTTCCTTGAGAAGCTAGCTG
AACAACAAGAAGATGTCCGCCCGCATATTCGTGATCGCTACCGCCTTCAT
GAATTATTACCAACATAGATGATTTCATCAAAAAACTCACGTGCCTCTTC
CTCTTGCAACATAACCAAACGAAAACGCTCAGACATCAGTGAAACAAGTG
AAGAAGAGACTGATACTTTAGAGCAAGAAAATGACCTAATTTACTCAGTA
AATAACCAACCGTTAATCTGGTCCCAATGTGAGGAGTCTGATATTCAGAA
AAGACTGCGTCTCGATTGGAGTATAAACAACAACGGTGATGATTACCTCA
ATGAATTTCTTTCATCGTCAACTGCAACAGGAGCTCAAGAAGATACTTCA
GAAGGACAAGTTAACATAGTGAATAGATCAAATTGTGTGACACTTGCAAA
CAAAATAACCGTTGCTACAGAATGCACAAGTTTTACAAGTGATCTAGACT
TTGATTCTTTGAGTGAATACAGCTCTTCATCTGACGACAATTCCAATAGT
AGCACTGGAGAATACAGTGAAAATAATACTACAAGTCAATCTTTATTTGG
AACTCTATTTTCTCCTGTGTTTGCTTTTTTGAATGGAAGTTTTGGTTCTC
GTGCCACTGATACAACTTTGAAGTCATATATAAAGAGACCAACAAATGTA
CCAAAAGCAAACGAAGAAGAACATTGTTATACTCAGCTCACAGCATTTGC
AACTCAAACATCAAAAATTGATGATTTAGACAGTGACCAAAGTTTAAGAT
CACCCAAACAAGATGGATTTGATCCGTACTATTTTATTCGTAATTTGAAA
CTACCTGAAGCAGATACACAGAAAAAGACTGTGCTACCACTGCCCACTAG
AAGAACTCCTAAAATGTGCCTTGTTCTTGATCTAGATGAAACTCTTGTAC
ATTGCAGCCTAACAGAACTACAGAATTATGATATGACTTTTACTATAGAT
CTTGATGACTCTACAATAACAGTATATGTTCGGTTAAGACCTCATCTAGA
AGAATTTCTGGAGAAAGTTTCCCAGTGGTATGAAGTAATTTTGTTTACAG
CCTCGCAGAGAGCTTATGCTGATAAGCTTATTAATTTGATCGATCCGAAG
CGTGCAATTTTTAGACACAGACTTTTTCGTGAACATTGTTCTTATATTGG
TGGAACTTACATCAAAGATCTCAATATTCTTGGTCGCGATCTGCGTTACT
CCATGATCGTCGATAACTCACCGCAAGCTTTTGCGTATCACGTGTCCAAC
GGAATACCAATCGAATCTTGGTTTTACGATGAAAACGACGTTGAACTTCA
ATCCCTTCTTCCGTTCCTTGAGAAGCTAGCTGAACAACAAGAAGATGTCC
GCCCGCATATTCGTGATCGCTACCGCCTTCATGAATTATTACCAACATAG
ATGATTTCATCAAAAAACTCACGTGCCTCTTCCTCTTGCAACATAACCAA
ACGAAAACGCTCAGACATCAGTGAAACAAGTGAAGAAGAGACTGATACTT
TAGAGCAAGAAAATGACCTAATTTACTCAGTAAATAACCAACCGTTAATC
TGGTCCCAATGTGAGGAGTCTGATATTCAGAAAAGACTGCGTCTCGATTG
GAGTATAAACAACAACGGTGATGATTACCTCAATGAATTTCTTTCATCGT
CAACTGCAACAGGAGCTCAAGAAGATACTTCAGAAGGACAAGTTAACATA
GTGAATAGATCAAATTGTGTGACACTTGCAAACAAAATAACCGTTGCTAC
AGAATGCACAAGTTTTACAAGTGATCTAGACTTTGATTCTTTGAGTGAAT
ACAGCTCTTCATCTGACGACAATTCCAATAGTAGCACTGGAGAATACAGT
GAAAATAATACTACAAGTCAATCTTTATTTGGAACTCTATTTTCTCCTGT
GTTTGCTTTTTTGAATGGAAGTTTTGGTTCTCGTGCCACTGATACAACTT
TGAAGTCATATATAAAGAGACCAACAAATGTACCAAAAGCAAACGAAGAA
GAACATTGTTATACTCAGCTCACAGCATTTGCAACTCAAACATCAAAAAT
TGATGATTTAGACAGTGACCAAAGTTTAAGATCACCCAAACAAGATGGAT
TTGATCCGTACTATTTTATTCGTAATTTGAAACTACCTGAAGCAGATACA
CAGAAAAAGACTGTGCTACCACTGCCCACTAGAAGAACTCCTAAAATGTG
CCTTGTTCTTGATCTAGATGAAACTCTTGTACATTGCAGCCTAACAGAAC
TACAGAATTATGATATGACTTTTACTATAGATCTTGATGACTCTACAATA
ACAGTATATGTTCGGTTAAGACCTCATCTAGAAGAATTTCTGGAGAAAGT
TTCCCAGTGGTATGAAGTAATTTTGTTTACAGCCTCGCAGAGAGCTTATG
CTGATAAGCTTATTAATTTGATCGATCCGAAGCGTGCAATTTTTAGACAC
AGACTTTTTCGTGAACATTGTTCTTATATTGGTGGAACTTACATCAAAGA
TCTCAATATTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048748-exon-scaffold_146-1575043694:219894..221297 | TCONS_00048748-exon-scaffold_146-1575043694:219894..221297 | Clytia hemisphaerica | exon |
| TCONS_00048748-exon-scaffold_146-1575043694:213763..215733 | TCONS_00048748-exon-scaffold_146-1575043694:213763..215733 | Clytia hemisphaerica | exon |
| TCONS_00048748-exon-scaffold_146-1510915933:219894..221297 | TCONS_00048748-exon-scaffold_146-1510915933:219894..221297 | Clytia hemisphaerica | exon |
| TCONS_00048748-exon-scaffold_146-1510915933:213763..215733 | TCONS_00048748-exon-scaffold_146-1510915933:213763..215733 | Clytia hemisphaerica | exon |
| TCONS_00048748-exon-scaffold_146-1491911889:219894..221297 | TCONS_00048748-exon-scaffold_146-1491911889:219894..221297 | Clytia hemisphaerica | exon |
| TCONS_00048748-exon-scaffold_146-1491911889:213763..215733 | TCONS_00048748-exon-scaffold_146-1491911889:213763..215733 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:213763..221297 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016791 | phosphatase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016791 |
phosphatase activity |
Blast
BLAST of TCONS_00048748 vs. Swiss-Prot (Human)
Match: CTSL2 (CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2 PE=1 SV=2) HSP 1 Score: 294.278 bits (752), Expect = 6.355e-88 Identity = 137/210 (65.24%), Postives = 165/210 (78.57%), Query Frame = 3
Query: 990 FDPYYFIRNLK-LPEADTQKKTVLPLPTRRTPKMCLVLDLDETLVHCSLTELQNYDMTFTIDLDDSTITVYVRLRPHLEEFLEKVSQWYEVILFTASQRAYADKLINLIDPKRAIFRHRLFREHCSYIGGTYIKDLNILGRDLRYSMIVDNSPQAFAYHVSNGIPIESWFYDENDVELQSLLPFLEKLAEQQEDVRPHIRDRYRLHELLP 1616
FDPYYFI+++ L E +K LPL TR TP+ LVLDLDETLVHCSL EL++ +TF + D VYVRLRP EFLE++SQ YE+ILFTAS++ YADKL+N++DPK+ + RHRLFREHC + G YIKDLNILGRDL ++I+DNSPQAFAY +SNGIPIESWF D+ND EL L+PFLEKL E EDVRPHIRDR+RLH+LLP
Sbjct: 255 FDPYYFIKHVPPLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLP 464
The following BLAST results are available for this feature:
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