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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048749 ID=TCONS_00048749|Name=TCONS_00048749|organism=Clytia hemisphaerica|type=transcript|length=1070bp
taaaaagttaacgCTCAAAACCTTGATGCTGTTGTAAAGGTTTTCTCATC
TCAAAGAATAATTTCAGAATTCTTCTCTTTCGAAACTAAACTACATAATG
AAAGAATACAAATTCAACGGCAGCCGAAATACGCGTGGTGAGCGTCATGG
TTACGGGGAAACCATTTTGACAAATGGTGACCAATACAAAGGTGATTATA
AGAATGGATTACGTCATGGCAAAGGGGAATACTTGTTTACGTCATCTTTG
ACGCTCGATGCTAATGTACCGGTAACGAAAACTGTGAAATATATCGGCCA
TTATGAAGAGAATAAAAAGACTGGACATGGTATTTTTATATACCCAAATG
GATCAAGGTACGAAGGCGAATGGAAAGATAACAAACGCCATGGCAACGGC
ACATATTACTATAGCAACGGAGATGTTTACTCAGGAGATTGGGTACAAGA
CTGCCGTCATGGAAACGGAACGTAcgaatattttacagaccagatgaAGT
ATATTGGAATGTGGCGCAAAGGAAAAAGATCGGaaaaattcgaaCGACAG
AAAGTATTGTTACACGGTATTCCAGATGAGGGGACCAATGTTCAAATATT
AGGAATTCGATTTAGAGAAGGTTGACTATAGATGCTTCCCCGATAAAAAG
ATGTACGATATTTTTCCAGGCGAAGGGAAGCTTGTCTACAAGAGCTCATA
TTATGACGGACAATTTCGTCATGACAAAATGTTGGGTCCTGGTAAATATG
TTTTCGAGAATGGAACAATCCACTATGGAGAATATGTGGTTGATGAAGTG
CGAAAAGCAAAAGGAGTTGGGAACGAATTTGTAACACAATGGAGATGCAA
AAATGTATGCAAGTGATATGCCGTCGTTCCGAGGGTGCTGTTTAGGTcag
tctccactttcgcgcgataTGAGCGAacactttttgacgtttttgtaagg
tcattggtcggttgaaaaataaagcaattccattggtcgaaattgacgta
acggatgaaaaaagtagaatttcaactttatttttgttagtgcgaaactt
ttttatgacgtaatcttttc Run BLAST on NCBI transcript from alignment at scaffold_146:245270..247139- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048749 ID=TCONS_00048749|Name=TCONS_00048749|organism=Clytia hemisphaerica|type=transcript|length=1870bp|location=Sequence derived from alignment at scaffold_146:245270..247139- (Clytia hemisphaerica)
TAAAAAGTTAACGCTCAAAACCTTGATGCTGTTGTAAAGGTTTTCTCATC
TCAAAGAATAATTTCAGAATTCTTCTCTTTCGAAACTAAACTACATAATG
AAAGAATACAAATTCAACGGCAGCCGAAATACGCGTGGTGAGCGTCATGG
TTACGGGGAAACCATTTTGACAAATGGTGACCAATACAAAGGTGATTATA
AGAATGGATTACGTCATGGCAAAGGGGAATACTTGTTTACGTCATCTTTG
ACGCTCGATGCTAATGTACCGGTAACGAAAACTGTGAAATATATCGGCCA
TTATGAAGAGAATAAAAAGACTGGACATGGTATTTTTATATACCCAAATG
GATCAAGGTACGATACAATGTTCAAAATATATTGAGAATTTATCCTAACG
TTTTTCTTAATTTCAAGTTTTCTGCGAGAACTACGATTTTAGTAATTCCT
CTCTATTTTATTGAATATTTTGATTTCGGAGGAGTTCAGTTAGAACAATG
AGATTCTTATTTCCTCCAAAGTTTTAAGTTTCATGGTAAAACTCTACATT
CCAGAAGTAAATTAGAGCGCCTAAAAATCATCTGTGGTTGTCTCAAATAT
TTTGTCCAAGAGTGTAGTAAAGGCATTCTTTGATGGGAGATATAATATTA
CTCAATCTTGTACCCAGGGTCTTTTGCACCGCTTTTTGATTTTATCACTG
GGCGTAATATAATTGTGAGCGTTATTAGTCTGAATCGCAGACACGAATTC
GTTGGATACCAGCAGCAGCCTGGAACACAATTAGAGTGATATATCGAACT
AAAGGGCGTGGGCTCGAGAATGAGAACTTTGAATGTTATTGAACGCGTAC
GAAAATAATTTCGTTAAATTTTGAGAAAAATAATTTTGTACTTTCTTCAT
ATAAGGTACGAAGGCGAATGGAAAGATAACAAACGCCATGGCAACGGCAC
ATATTACTATAGCAACGGAGATGTTTACTCAGGAGATTGGGTACAAGACT
GCCGTCATGGAAACGGAACGTACGAATATTTTACAGACCAGATGAAGTAT
ATTGGAATGTGGCGCAAAGGAAAAAGATCGGGTGAGGGTTTTTTGTGGGA
TGGGTGTGAAAAATCAAAAATTTGGCTTGTTTTTGTTTTTTGTTTTTGAA
TGTCCGGGAGATTAACTGTTCCTTGTCCGGTGGGTCAGAATTTGCAATTT
CACGGGGTAAATTTCCTAAAAATCAATATCGAAATATTTACTATAGCTAT
ACAACGAACATGATCTTTTTGTATCTCAGTTGTTTCTCTAATTCAGTCTT
CAGGGGGACTAAAATATTTTCTACAAATTATAGAAAAATTCGAACGACAG
AAAGTATTGTTACACGGTATTCCAGATGAGGGGACCAATGTTCAAATATT
AGGAATTCGATTTAGAGAAGGTTGACTATAGATGCTTCCCCGATAAAAAG
ATGTACGATATTTTTCCAGGCGAAGGGAAGCTTGTCTACAAGAGCTCATA
TTATGACGGACAATTTCGTCATGACAAAATGTTGGGTCCTGGTAAATATG
TTTTCGAGAATGGAACAATCCACTATGGAGAATATGTGGTTGATGAAGTG
CGAAAAGCAAAAGGAGTTGGGAACGAATTTGTAACACAATGGAGATGCAA
AAATGTATGCAAGTGATATGCCGTCGTTCCGAGGGTGCTGTTTAGGTCAG
TCTCCACTTTCGCGCGATATGAGCGAACACTTTTTGACGTTTTTGTAAGG
TCATTGGTCGGTTGAAAAATAAAGCAATTCCATTGGTCGAAATTGACGTA
ACGGATGAAAAAAGTAGAATTTCAACTTTATTTTTGTTAGTGCGAAACTT
TTTTATGACGTAATCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048749-exon-scaffold_146-1575043694:246783..247139 | TCONS_00048749-exon-scaffold_146-1575043694:246783..247139 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1575043694:246059..246234 | TCONS_00048749-exon-scaffold_146-1575043694:246059..246234 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1575043694:245270..245806 | TCONS_00048749-exon-scaffold_146-1575043694:245270..245806 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1510915933:246783..247139 | TCONS_00048749-exon-scaffold_146-1510915933:246783..247139 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1510915933:246059..246234 | TCONS_00048749-exon-scaffold_146-1510915933:246059..246234 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1510915933:245270..245806 | TCONS_00048749-exon-scaffold_146-1510915933:245270..245806 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1491911889:246783..247139 | TCONS_00048749-exon-scaffold_146-1491911889:246783..247139 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1491911889:246059..246234 | TCONS_00048749-exon-scaffold_146-1491911889:246059..246234 | Clytia hemisphaerica | exon |
| TCONS_00048749-exon-scaffold_146-1491911889:245270..245806 | TCONS_00048749-exon-scaffold_146-1491911889:245270..245806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:245270..247139 - |
Blast
BLAST of TCONS_00048749 vs. Swiss-Prot (Human)
Match: RSPH1 (Radial spoke head 1 homolog OS=Homo sapiens GN=RSPH1 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 8.008e-34 Identity = 68/141 (48.23%), Postives = 84/141 (59.57%), Query Frame = 2
Query: 110 KFNGSRNTRGERHGYGETILTNGDQYKGDYKNGLRHGKGEYLFTSSLTLDANVPVTKTVKYIGHYEENKKTGHGIFIYPNGSRYEGEWKDNKRHGNGTYYYSNGDVYSGDWVQDCRHGNGTYEYFTDQMKYIGMWRKGKRS 532
++ G RN GERHG G L NGD Y+G Y+ G RHG+G Y F + +YIG Y NKK G G FIYP+GSRYEGEW ++ RHG+G YYY N D Y+G+W RHG GTY Y KY+G W G++
Sbjct: 19 EYEGGRNEAGERHGRGRARLPNGDTYEGSYEFGKRHGQGIYKFKNG------------ARYIGEYVRNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYINNDTYTGEWFAHQRHGQGTYLYAETGSKYVGTWVNGQQE 147
The following BLAST results are available for this feature:
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