TCONS_00048751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048751
Unique NameTCONS_00048751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048751 ID=TCONS_00048751|Name=TCONS_00048751|organism=Clytia hemisphaerica|type=transcript|length=365bp
ATTGAGAAGGATGGAATATTTGTAAACACCTCCACTTTTGTAACGTTGGT
GAATCTCCACATTGTATTCTGTGTTGAATTGTACTGGATCAACATATTTC
GAATGTGTGATTACTCCATTGACAGCTGATgttattgaaaacaaattacC
ATCAATTCTATAGTAAATACAAGGCGACCGGTCCCCATAAGTAGCTACAT
TCGAGTCATGCGTCATATGTAAGATGTTACAATAACCGGTACTACTGACT
TCATTCCCAAACATTTTGAATCTGATGTTTACAATCCATTCACCTGATAG
CGTCGGTATGGTGGTTTTCAATTTGTTGAATTCGATTGATTCCTCTACAA
TAAATATCAGGAATC
Run BLAST on NCBI

transcript from alignment at scaffold_146:253087..258715-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048751 ID=TCONS_00048751|Name=TCONS_00048751|organism=Clytia hemisphaerica|type=transcript|length=5629bp|location=Sequence derived from alignment at scaffold_146:253087..258715- (Clytia hemisphaerica)
ATTGAGAAGGATGGAATATTTGTAAACACCTCCACTTTTGTAACGTTGGT
GAATCTCCACATTGTATTCTGTATTGAGCTCGATAGGAAAGTAATTACGA
TAGCCTTCGTTCCCGTTGACAGCGGAATAAGTTACCAAATTTTGAATTTC
TTTATTGTAAAAGATTCCGGGAGTTCGGTCACCATATTCTTCGAGCTTCC
CACCTTTTGTCAACTGTAAGATATTGCACCATTTATCGTTCACTGATCCA
GTCAACTTGAACCTGAATCGAACTTCCCATTCTTGGGAAAGTCGTGGTAT
GATCAACTTTACATCTGTTGTGATCTCTTCTCCTAATATGAGAAAAAATT
TGTTCAACTTAGTTCTTGGTGTTTCATATTTGGTGTGCGGTACCATTTCA
GTAAAAGTAAGCCCTTCGGGTTTTATAAATCTGTGCGTTGAAGTATCGTA
GCAACAAATATTTGAGAACGTGGCTCGCAGAAGAGTGTATTTCATAATTT
AAATCTATATACCTTTAGAAGAATATTTTATAACATTTTTCGGTTATTTA
TTATCTTTGTTCTTATAAAAGAACATATTCCGCCTCAGTTAAGTTTCTTG
CAATTTGATTGGTCAAAAGACGCTAAGTGGAGGTAGGATAAATCTTATAT
CGCCCCCTCCCTCCGCTAAATCTCGTTAAATCTCGGCAAGCCTCGCCCAA
TACCGGTTTTTACTGACCCAATATATTTCGTATTGCACACCTCGCATACC
GTGTAACTGATAATGTTCTTATTATCTTTGTTCTTATAAAAGAACTTACC
TTTGTCACCTAGGATGACGATTGGTTGGATTCCATGGTTATTTTTCGGAA
TCTGAAAACGTGAATGAAACAATAAAGAAATTAACTTAATTAAAAAATCC
CTTATTACAATATTGAAAAATTTCGTGTTAATAAAAACCCCCTTAATTAA
AACCAACCGTGGTGTCCTTGAAAAAGCAATAAAATTCGTGCTAATTTTTG
GCGTGTTAATTTCAAGGCTGTTAAATACTTCCATACCTATATTCGTGTAA
TAAGGTAAATCCTTTCAGCAACTTTATCTTTAACAAACTGTACCATTTCA
GATAAAATTTCCTCTGTGAGACCACCCGTCATCAGTGCCCCTCAGATGAA
ATAATTTAATTTTTCCATTTTAAACAAATTTTTGTTGTTCAAAAAAAACC
ATATCACTATTCTTTGGTTGAGCCTGTTCCGGTTATGGAATCCAGCCAGG
CGAAGGGGCTAGACCCATTTTTTTTTCTCGAGATTATGCGTATAGTTTTT
GCCTTACAATCCAAGAGTTGTGGGTCCGAATCAGCGAATGAGTAGCTTTG
ATTGGGTATTATGGTCTAGGCGCTAAATAAGTGGGAGCTGAATGTAGCTG
GGACACTCCACCTCAGCATTCGACCTTCAAGGCTTAGCGCAAATAGAAAA
GGAGATAGACTCCTTCACTCCCAGTTCCGCCGACTGCCACCATATTTATA
AAGATAGATACAAGCAGGGATATGTTATAGCATAGCTGGATGAAGGACGA
GATATCCTTAGCGGATTGCTTCTTTGTATTTTCTATTGTAAACTGTTCAT
AATAGAAATCCATCTCTGTCCCCTTGAGTGTTCTGTTTTTATAAGAAAAA
TGAAGCAGCCAAAGTATTCATGCAGTACGTTTGCATATATTTTGCTATAA
TGTTACCGCTTTTCATCAAAATAATATTTGCAAAAGATACCCCAAAAGTT
TCTTTGTAAATGAAATCTAATTTTATCAGCGTGTGTTATGAATTTGAGAA
GCTTTCATGATTTTTCTTTAAAAATTTTGGATGTAAATATTTTGACAAAT
ATTGTTTCAATTGACTTGAAATTTTTTCCATATTCAGACATACATCAGTT
AAAAAGTGAGGCACCCCGCGGTGTAGCGCGGTATTTCAAATGAAAAAGAG
CTATTTATAATCTTACAGAAGAAATTTCTTATAACTTTACTAATGAGAAC
AATGTTTTTCATTTTTTTAAATTGTCATTCACCAATGTTTTACAGACCCT
CTTGATAATTAAAAGTTTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAAAGTTTAATTTCATATCAAATTTTAATGTCAGGGACAGAG
ATAGAACAAGGCTTTTTCAAATGTGCGTTATCCAGCTACGCTATAACATA
TCCCTGAATAAAGTGACCTTTTCATGACACGACTTCATAGCAGCCAAAGT
TTGTAACAACAATTCGATAACCAAACATAGGTATGATATGATCTTCATCT
TATAGAAAGTATAGGCTACAAATTATAAGTTTCTCGAAAAAAAACAATAT
TTTGAATTCAAGTGACAAGTTTATTCCCAAAAATATTACTTTATAAATCA
TTTATCGTTTTAAGAAATCATCAGATTTCTCCTTTATTTTATTCAGGTAC
AATATTATCCACGGATCACAAAATCACTTATGGCTCGCGAAAACGTATTG
AAGACATAGTTAAATGGTTTGTTATTCAACCAAATATATGATTGGAGCCA
CAAAGCCATGAATTTTCAAAGAAAATTTCAGTGTCTATGCAATTTTTGAA
TGAATTACAGAAAAACTATTTTAAAATTGAATTCGCTTATCAAATCATCG
ATTCTCTATTGAGAATTTTTCATGTATCCCCTACCTTCTCCCATTCTGTA
ACCAAGGGAAATACAAAACCTTTATGGTTTAAAGTTCTTTCTTATAAAAA
ATGTGTATGGAATAAACATTCAGATTTGTGGAAGGAGATTGCTAACACAA
ATTATAGCCCTGTGTCATTGAGTGAAACCCCCGTCCGACTAGAAAATTTT
GGGAAATTTGATCTCAAGTTTGAAAATACCCTACAATTTCAGCCGCACTA
CAAAATTGACTTTGATATCATACCCTTTTTATATTAAATGCAAAATTGCA
CTCATGAAAATTCCCAATTAAAAATTTTGATAGAAATTTTCATCCCACTG
TGGGAAAAGGACTTTCTTTTGACTACAAGTTTTGATCTTAAACCTGATGA
GAGTTTTTCGCACTGTCAGCAATATTAAACAGTTTATGACGTGGATTTGT
AGAATAATTGTTCGTCAATAAATTTTGTCCGGTTCCTTTTGAAGGTAAAA
TTTGATTTTACAGTGTTGGGCCCTTAGAATGCAGGTCAAAATTACATAAA
GATAAATTTTACTTTGAATTCTCGAAGGACAAAAATATAATTTCTACAGT
CTCATTTATAAAAGATCGAAGTTAACTTAAGAGCAATATTTAGTCATCTC
CGTTGATTCCGTTGATTCAGTTGATAACAAATTCATATTGTATTCATGTG
ATTCGCTGGTTGTGGTACAAAACCTAGTAACAGTAGTTGTCACGCTATTC
ATACTACGCTTTTAGGGCCGTTCAAAACTAGGGGGGCTGTTCCTGTACCA
TACCTCTTAACTTTAGATATAGTGGGGTTTTTTTGGATAAGATTTGGTAC
ACAAGATCCTTGTCGTATAAGGTAACTTTTGACAATAACCTTTTTTAATG
ACGTCACTCATCATGCCCAAAGTGAGCTTATTATCTTATAAATAGCTATT
GTATTCTAGCAAAGGCTTCAAAGTTCCCTGAGTCTTATGCTTATTTTATC
CTAAATATTGGACATAAAAAATACAAGGTGTGAAACTTTTTAGTGTCAAA
TTTTTGTTTATTTTGAAGCTGAATAGAAGTTAGGAATTTACAGAAAATTT
CATGCAAAAAACTTTTATTTTTGGAGCTATTAACATTAGCTTCAACCCCA
AACAGAAACAGCCCCCTCTAACACCCCTGTGTCACAGACCCGGTGGACCC
CCCACCACACTGGAAGAATAGGCCAAAAAATCGTCCCCGGTGGAAAAAAT
ATCCTACAATTTCAACCCCACTGCGAAATTGCTCTATGATTTTATCCCCA
TTGAAAACTGAATGTAAAAAATTGCACTCCAAAACCATCCCACTGGAATT
TTCAAGCTGGAAACAATAGAGTTTCTATCCCCATTGGCATTTTGATAGAA
ATTTTCATCGCCGCTGAGGGAAAAAGTTCAACTGGGGCACTGAGACAGGG
GTGTCCTCTAGTACGAACAGGGTCTGAAACTCCATTTGCTATTTTTATTC
GTTCCCAGCTGGCTCACAACGTTGTTCCGAATTTCATCTAACGTTATATG
GACATTGTGAACATGAGATGGACGTTGAAATAACGTTGTGTGCCAGCTGG
GGTTGTATGTACCGAGACAAGGATGTGTTAATCCATCAGTAACGTAAAAC
AGTTCCGTCACGCCAAAAAAAGTCATTGAAAATTTAAAGGGCCATAAAAG
TAGTGACGAAATTCATATGCAGCGGGATACAAAATCAAAACAAATGTCAC
ATGTTAAAATAAAAAATAAAAACAAATATGGCTGATTTTGATTGTTTCAA
TTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAATTCTTGACATGCGT
AAGTCATTTTTCTAGCAGAAACACCCTAAAAAATTCGGGATTTGACCCCT
CTCTGTTACTAAAAATAGAAACACGGAGGTCAAAAACCGGCTTTTTTGGG
TGCTTCCGTTAAAAAATATGACGTCATCTTGACTTACGCATATCAAGAAT
TGTTCTCTTTAATGACACGTGGTTCGTGCAATGTTTACATTTTACTACTT
TTATTTACGTCCCTTTTAACGGTTCGTGATTCTCAAAGAAAGTTTGTTAT
CTTCAATTGACTGATTGTCCCATTACATGCTTTACTCCAAGGGCTACCGG
TGTAAACTTTAACATCGTGAAATTGTTCAGCTTGTGTATTATCGGTTGAG
TGGATTTCTTCTCCATTGAGAAGGATGGAATATTTGTAAACACCTCCACT
TTTGTAACGTTGGTGGATCTCCACATTGTATTCTGTGTTGAATTGTACTG
GATCAACATATTTCGAATGTGTGATTACTCCATTGACAGCTGATGTTATT
GAAAACAAATTACCATCAATTCTATAGTAAATACAAGGCGACCGGTCCCC
ATAAGTAGCTACATTCGAGTCATGCGTCATATGTAAGATGTTACAATAAC
CGGTACTACTGACTTCATTCCCAAACATTTTGAATCTGATGTTTACAATC
CATTCACCTGATAGCGTCGGTATGGTGGTTTTCAATTTGTTGAATTCGAT
TGATTCCTCTACAATAAATATCAGGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030986XLOC_030986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048751-exon-scaffold_146-1575043694:258656..258715TCONS_00048751-exon-scaffold_146-1575043694:258656..258715Clytia hemisphaericaexon
TCONS_00048751-exon-scaffold_146-1575043694:253087..253391TCONS_00048751-exon-scaffold_146-1575043694:253087..253391Clytia hemisphaericaexon
TCONS_00048751-exon-scaffold_146-1510915933:258656..258715TCONS_00048751-exon-scaffold_146-1510915933:258656..258715Clytia hemisphaericaexon
TCONS_00048751-exon-scaffold_146-1510915933:253087..253391TCONS_00048751-exon-scaffold_146-1510915933:253087..253391Clytia hemisphaericaexon
TCONS_00048751-exon-scaffold_146-1491911889:258656..258715TCONS_00048751-exon-scaffold_146-1491911889:258656..258715Clytia hemisphaericaexon
TCONS_00048751-exon-scaffold_146-1491911889:253087..253391TCONS_00048751-exon-scaffold_146-1491911889:253087..253391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:253087..258715 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.44231	0	0.138678	0.302082	0.429201	0.0321275	5.49767	5.65458	1.46294	0.911804	0	0	9.83179	6.30503	0.393832	0	0	1.29792	0.0815882	0.934987	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top