TCONS_00048783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048783
Unique NameTCONS_00048783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048783 ID=TCONS_00048783|Name=TCONS_00048783|organism=Clytia hemisphaerica|type=transcript|length=699bp
GAAGATTCGGATCGCAAGGGTAACAagttaatttttaaaacatggcATAG
TGATAATTTGCAAATCTGTTATCATTATTTATTACGAAAATTCTATCATT
agaatttaaagaaaagaaaatggaaGGAAATATTATTGAAGCATTAAACA
TGAGCGCGATTTCTCGAAAATTTGATAAACTTTAATTTGTTTCAGGGAAA
CTGAATGACAAGacagcgaaaattagttccctttagGTAAGCATTGTCTT
CTATCATTATTATATTCTTCTGATTCGAATAAAGAAACTATGCGTAATGC
AGAATACAGCATAATGGATAATACTTTCATGCCAGATGACTCAATTGAAG
ATATATCATTTTTATCATCATCACTTAAccaaagttatgaaaaagaatga
aaaagacTCCAAAGCAATATTCCAATCCTTGTTAGGAGCATAGTCTCCAT
GACCAATAATTAATCGAACTGCGTAGTCGAAACCcgttcattttattttt
tactcaTGTATATTATTTGTTTTAATCAGCAATGCTAAAAAGTTTTCAGT
GGTTGACGCAGCActgcttttcaaaaaattgtgatGGAAAAGAGAGAACC
ATAATCATTTTGATGGACATAATGAAAAAGACCCGAAAGCAATATTCCAA
GCTTTGTTAGGAGCAATCAAAGTCTCCATGACccaaaaaatcaatcaaa
Run BLAST on NCBI

transcript from alignment at scaffold_146:65210..65908

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048783 ID=TCONS_00048783|Name=TCONS_00048783|organism=Clytia hemisphaerica|type=transcript|length=699bp|location=Sequence derived from alignment at scaffold_146:65210..65908 (Clytia hemisphaerica)
tttgattgattttttggGTCATGGAGACTTTGATTGCTCCTAACAAAGCT
TGGAATATTGCTTTCGGGTCTTTTTCATTATGTCCATCAAAATGATTATG
GTTCTCTCTTTTCCatcacaattttttgaaaagcagTGCTGCGTCAACCA
CTGAAAACTTTTTAGCATTGCTGATTAAAACAAATAATATACAtgagtaa
aaaataaaatgaacgGGTTTCGACTACGCAGTTCGATTAATTATTGGTCA
TGGAGACTATGCTCCTAACAAGGATTGGAATATTGCTTTGGAgtcttttt
cattctttttcataactttggTTAAGTGATGATGATAAAAATGATATATC
TTCAATTGAGTCATCTGGCATGAAAGTATTATCCATTATGCTGTATTCTG
CATTACGCATAGTTTCTTTATTCGAATCAGAAGAATATAATAATGATAGA
AGACAATGCTTACctaaagggaactaattttcgctgtCTTGTCATTCAGT
TTCCCTGAAACAAATTAAAGTTTATCAAATTTTCGAGAAATCGCGCTCAT
GTTTAATGCTTCAATAATATTTCCttccattttcttttctttaaattctA
ATGATAGAATTTTCGTAATAAATAATGATAACAGATTTGCAAATTATCAC
TATgccatgttttaaaaattaactTGTTACCCTTGCGATCCGAATCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031002XLOC_031002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048783-exon-scaffold_146-1491911889:65210..65908TCONS_00048783-exon-scaffold_146-1491911889:65210..65908Clytia hemisphaericaexon
TCONS_00048783-exon-scaffold_146-1510915933:65210..65908TCONS_00048783-exon-scaffold_146-1510915933:65210..65908Clytia hemisphaericaexon
TCONS_00048783-exon-scaffold_146-1575043694:65210..65908TCONS_00048783-exon-scaffold_146-1575043694:65210..65908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:65210..65908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0724036	0.353024	0.163958	0.160407	0.0976402	0	0.0930862	0.0871462	0	0.0755746	0	0.0482204	0.0481533	0.0500077	0.0822263	0	0	0	0	0	0	0	0.249049	0	0	0	0	0	0.0803623	0.0818765
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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