TCONS_00048793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048793
Unique NameTCONS_00048793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048793 ID=TCONS_00048793|Name=TCONS_00048793|organism=Clytia hemisphaerica|type=transcript|length=669bp
ATTCAAAGTAACAGTGATAcatcatatttttttttgtagcTCGTGCATAC
GTTCGGTATGCACGACAAAAAAAGAAGATGAGCCACACAGACACACATTT
GGAGTTCGGCAGCTGGGTAAAGACCGGTGGCCAGTTGTATGGGTACTCCC
ATCATGGAAGCcacaagaagaagaaaaactaggtaaacaaaatttttgta
atattttttgtccTCGATACCTTTTTAATCAACATTCAGTTTAAAGAAAA
GGTTAACTAAATTGCTTTCTTACCTAACTTTCCAGTGTCTTGACTATGAA
ATTATAGAGTGTCGATTATTAAGGTGTCTATGGTTGTAGTATTAACATAT
TTTTTGCCtaggattttttcttcttgtgtCTTCCTTCAATTAAAAAAGTC
CCATACACTGAAAATTCTATTTGTGCCTTTGCCCCATCTCCTTCATTATA
AAGCTCATCCACCACTTTTTTGTtgagttttcgaaaaataaaatactcAG
AGTTTTCGACATGATTACCCTCCTCGTTGAGGTTTTACGATtgaaattgt
tgttgttgttgttgttattacATTCCTAAAAATAGCTGAGCTGAAATTTA
AACCAATCTTAACCCTCTGGCCTTCATTCGTTTTCATTTATAAGCggtag
aatgtttttttttataatg
Run BLAST on NCBI

transcript from alignment at scaffold_146:101172..101840

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048793 ID=TCONS_00048793|Name=TCONS_00048793|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at scaffold_146:101172..101840 (Clytia hemisphaerica)
cattataaaaaaaaacattctaccGCTTATAAATGAAAACGAATGAAGGC
CAGAGGGTTAAGATTGGTTTAAATTTCAGCTCAGCTATTTTTAGGAATgt
aataacaacaacaacaacaacaatttcaATCGTAAAACCTCAACGAGGAG
GGTAATCATGTCGAAAACTCTgagtattttatttttcgaaaactcaACAA
AAAAGTGGTGGATGAGCTTTATAATGAAGGAGATGGGGCAAAGGCACAAA
TAGAATTTTCAGTGTATGGGACTTTTTTAATTGAAGGAAGacacaagaag
aaaaaatcctaGGCAAAAAATATGTTAATACTACAACCATAGACACCTTA
ATAATCGACACTCTATAATTTCATAGTCAAGACACTGGAAAGTTAGGTAA
GAAAGCAATTTAGTTAACCTTTTCTTTAAACTGAATGTTGATTAAAAAGG
TATCGAggacaaaaaatattacaaaaattttgtttacctagtttttcttc
ttcttgtgGCTTCCATGATGGGAGTACCCATACAACTGGCCACCGGTCTT
TACCCAGCTGCCGAACTCCAAATGTGTGTCTGTGTGGCTCATCTTCTTTT
TTTGTCGTGCATACCGAACGTATGCACGAgctacaaaaaaaaatatgatg
TATCACTGTTACTTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031012XLOC_031012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048793-exon-scaffold_146-1491911889:101172..101840TCONS_00048793-exon-scaffold_146-1491911889:101172..101840Clytia hemisphaericaexon
TCONS_00048793-exon-scaffold_146-1510915933:101172..101840TCONS_00048793-exon-scaffold_146-1510915933:101172..101840Clytia hemisphaericaexon
TCONS_00048793-exon-scaffold_146-1575043694:101172..101840TCONS_00048793-exon-scaffold_146-1575043694:101172..101840Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:101172..101840 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0771255	0.150419	0	0.256303	0.208016	0.0821886	0.198314	0.278489	0.194977	0.322013	0	0.205461	0.0512938	0	0.0437944	0	0.0578978	0	0	0	0.0745693	0	0.18266	0	0.66245	1.00649	0.105754	0.112864	0.171207	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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