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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048801 ID=TCONS_00048801|Name=TCONS_00048801|organism=Clytia hemisphaerica|type=transcript|length=2648bp
aatgttttctacggaaagaccccggtttttgccagtagtggcaaatttta
tacaacttttgtctagtttaaatttgccactgctaaaaccggggtatttc
cgtagaaaacattacgtcatgaatatcatgaaataAAAGTCTGTCAGGTT
TTCCATTATAAGAGCAAAGCactctttattttgaaaaaattgttattGGA
AATTTAATTGTGGGTAAAAAGTAGACTGGACCCACTGAAAACAAGTCCAC
CATTATAGCTAGATTTCAATCGATAACTTGAAAGTCAATCTATTTACTAG
GGTAAAATTTATAGATTCCCAACGGGTTGAACTagcaataaaaaacaaaa
actcttTCAAAGTTCCGTGACGCATAAATTCGTCATTTTCATGCTCAACT
CGTTGGCACCTGGAGGTTTCAAATGGTTAGATTTTGATGGAAATGTTGTG
CTTTCATCCCAAACCCCTGCATCGCGCCAAGATTGAAATTCTACAGCATC
GTGCGGGATGATATTGATCTGTGGTGGAGCACATACGTCTGATATGTTGC
TCTCCGTCGGAGAGGCGTAACCACTTTCAGAGCCGTGTCGTTCAAGTCGG
AAACCGTCGTACGTCGAATAAGACCGACGTTTATTCTGTCGGAAAGCTTC
ACCGGATTCAAAACTTTCGGCTCTTTCACGAACAATGTTATCGTATTCCC
CTGAGAATCGTTTCTCGGTTTTCTTCATCGTCGTCAAATCTTCGGTCGGT
TTTACGTAGATGGACCCGTCTTCGAAAGTGTTCGAGATTTTCGCGACGTT
TCCTGATGCGATAACTCCTTTCGGCGGTTCAGGCTCGGTATTACGCGATT
TTTTCAGATCTCGAAAATCTTGATGTTTTTGAGCCAAAATTGCGCTACGT
TGGGAAACGCTCATAAACTCACCGTGGTCCGACTTACATTGGCGTAATGC
GTTCTTGGTACCGCCCTCGTGTTGCGGCCGCCCTAAGTTTACCGGTAAGG
GGGATGTATCGCAACGCGTGTATTTTTGTTTACCTTTCGGttcttgtttt
tcaattttatccTTCGAGCCACGTCTCAATAAATTAGGTGAGCTACTCCC
TAACAATGCCAACAAGTTGCGATCTTTAGAGCCACGGCGAGATAAAAAAC
TCCTCGAAGGCCCACGTTCATCATCAAGCGATGTTTGTTGTTTTGTCTTA
AAGTCATATCCTGGAACCCACATCGTGGTAGCTTGAAATAATGGTCCACT
TTCTGAAGTCTCTTTATTATCAGGTTCGTCTGTAGGTGTTTTAGCGCGGT
TTTTATGCCGGTGTAACTTAGGACTTAACTCAATGAGACGTCTCAAGTCT
AACATCTGACTAATGGACTTTTTACGGTCCGGAGTTCCCGGTCGACTGGA
ATCTGAATAAGCAGAATGCGTGGAGGTCGGTCTCGAATTTTGCGTAGAAT
TAACTTTAAAATGTTCACTAAAATCCTCAGAAATAGATTTTTTCTCACGT
CGGATTTTCGCCGTTTCTTTTTCCGACGTTTTGTCTTCGTCGGCTGTGAT
GTCGGTATCGGATTGTGACCGGTGTCTTTGTGTTCGTCTCCGGATCATGT
CATTCATTTTACTCATCCCTTTCCGATTACTTTTGCGGTACGAATTAGCT
CGTTTTAAGTGCCCGCCACGTGTGGATAGCCTGGTTGGCGAAGTGTTCCG
TGAAGAAGCCGGGCTAATTTTGGGTGATTGAAAAGGTGAAGTAAAAGGAG
AATTCTCTGTTGATGAGTATGTTAAATCCATTGTGTGTGTACCCCCGTCT
CTCGGCATTACCTCTCATACAAATGTTTCTCAAACTTCAATAAAAACAGG
GGGGTTTTGTAACCATGAATGATTTCTTGTAAAGCAATAACTGATAATTT
TTTCCAAGTTTCTGCAATATAGCGACGAAATAACAATATTCGAAATTTGT
ACCccaaaatcagcaaaaaatatcaacacCAAATCTCGTTTGACTTtatc
cacaacaacaacaacagcagcaaGCGTTCGtttaacaaaatataaatttt
ctttatcacttgtctttctcaaatcaaaacatttgctAATCAAAACATAA
ATGGTAAGGGGTACTCATATATTGTCACAAGTTGAATCTCGTTTTGATGT
TGTTATATGATGACGTCACACGTACATGCTAATCCTAACACAAAGTCGAT
TCATAAAATGAAGCTCGATCTCGTTTTCAATATTTGTGTGttcttttgaa
gtttgcaaTGTTTACTTTATGTGATTAAATCTGAAACGTAATTGAGAACA
TTATTAAGTTATgaccattaagaaattccaatCCTACTTTTTGTTCCTGA
GACTTGTATGTTTGTGAAATTCTAAGAATGTTTAGTTATCAATTTGGGTT
CAGTCGATTCTACATAGCTCGAGCCTCGATGCAGCTACGTATTACAGAAC
CAGTGGCATCCGTCAGATCACTGGAAAATTCGTCAAATAATTGCCCCTTA
GTATTTTGTCCCACCATTCTTTAGTTTTCCCACCGGTTGAATGATACAGG
GAtgtttaaggggggggggtttcagggggtacccgattccgcaattccgt
caattttttctccaatttccgtcaaaccgtcttaaattgaaccaaaat Run BLAST on NCBI protein sequence of TCONS_00048801-protein >TCONS_00048801-protein ID=TCONS_00048801-protein|Name=TCONS_00048801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
MPRDGGTHTMDLTYSSTENSPFTSPFQSPKISPASSRNTSPTRLSTRGGH
LKRANSYRKSNRKGMSKMNDMIRRRTQRHRSQSDTDITADEDKTSEKETA
KIRREKKSISEDFSEHFKVNSTQNSRPTSTHSAYSDSSRPGTPDRKKSIS
QMLDLRRLIELSPKLHRHKNRAKTPTDEPDNKETSESGPLFQATTMWVPG
YDFKTKQQTSLDDERGPSRSFLSRRGSKDRNLLALLGSSSPNLLRRGSKD
KIEKQEPKGKQKYTRCDTSPLPVNLGRPQHEGGTKNALRQCKSDHGEFMS
VSQRSAILAQKHQDFRDLKKSRNTEPEPPKGVIASGNVAKISNTFEDGSI
YVKPTEDLTTMKKTEKRFSGEYDNIVRERAESFESGEAFRQNKRRSYSTY
DGFRLERHGSESGYASPTESNISDVCAPPQINIIPHDAVEFQSWRDAGVW
DESTTFPSKSNHLKPPGANELSMKMTNLCVTEL Run BLAST on NCBI transcript from alignment at scaffold_146:297139..299786 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048801 ID=TCONS_00048801|Name=TCONS_00048801|organism=Clytia hemisphaerica|type=transcript|length=2648bp|location=Sequence derived from alignment at scaffold_146:297139..299786 (Clytia hemisphaerica)
attttggttcaatttaagacggtttgacggaaattggagaaaaaattgac
ggaattgcggaatcgggtaccccctgaaaccccccccccttaaacaTCCC
TGTATCATTCAACCGGTGGGAAAACTAAAGAATGGTGGGACAAAATACTA
AGGGGCAATTATTTGACGAATTTTCCAGTGATCTGACGGATGCCACTGGT
TCTGTAATACGTAGCTGCATCGAGGCTCGAGCTATGTAGAATCGACTGAA
CCCAAATTGATAACTAAACATTCTTAGAATTTCACAAACATACAAGTCTC
AGGAACAAAAAGTAGGattggaatttcttaatggtcATAACTTAATAATG
TTCTCAATTACGTTTCAGATTTAATCACATAAAGTAAACAttgcaaactt
caaaagaaCACACAAATATTGAAAACGAGATCGAGCTTCATTTTATGAAT
CGACTTTGTGTTAGGATTAGCATGTACGTGTGACGTCATCATATAACAAC
ATCAAAACGAGATTCAACTTGTGACAATATATGAGTACCCCTTACCATTT
ATGTTTTGATTagcaaatgttttgatttgagaaagacaagtgataaagaa
aatttatattttgttaaaCGAACGCttgctgctgttgttgttgttgtgga
taAAGTCAAACGAGATTTGgtgttgatattttttgctgattttggGGTAC
AAATTTCGAATATTGTTATTTCGTCGCTATATTGCAGAAACTTGGAAAAA
ATTATCAGTTATTGCTTTACAAGAAATCATTCATGGTTACAAAACCCCCC
TGTTTTTATTGAAGTTTGAGAAACATTTGTATGAGAGGTAATGCCGAGAG
ACGGGGGTACACACACAATGGATTTAACATACTCATCAACAGAGAATTCT
CCTTTTACTTCACCTTTTCAATCACCCAAAATTAGCCCGGCTTCTTCACG
GAACACTTCGCCAACCAGGCTATCCACACGTGGCGGGCACTTAAAACGAG
CTAATTCGTACCGCAAAAGTAATCGGAAAGGGATGAGTAAAATGAATGAC
ATGATCCGGAGACGAACACAAAGACACCGGTCACAATCCGATACCGACAT
CACAGCCGACGAAGACAAAACGTCGGAAAAAGAAACGGCGAAAATCCGAC
GTGAGAAAAAATCTATTTCTGAGGATTTTAGTGAACATTTTAAAGTTAAT
TCTACGCAAAATTCGAGACCGACCTCCACGCATTCTGCTTATTCAGATTC
CAGTCGACCGGGAACTCCGGACCGTAAAAAGTCCATTAGTCAGATGTTAG
ACTTGAGACGTCTCATTGAGTTAAGTCCTAAGTTACACCGGCATAAAAAC
CGCGCTAAAACACCTACAGACGAACCTGATAATAAAGAGACTTCAGAAAG
TGGACCATTATTTCAAGCTACCACGATGTGGGTTCCAGGATATGACTTTA
AGACAAAACAACAAACATCGCTTGATGATGAACGTGGGCCTTCGAGGAGT
TTTTTATCTCGCCGTGGCTCTAAAGATCGCAACTTGTTGGCATTGTTAGG
GAGTAGCTCACCTAATTTATTGAGACGTGGCTCGAAggataaaattgaaa
aacaagaaCCGAAAGGTAAACAAAAATACACGCGTTGCGATACATCCCCC
TTACCGGTAAACTTAGGGCGGCCGCAACACGAGGGCGGTACCAAGAACGC
ATTACGCCAATGTAAGTCGGACCACGGTGAGTTTATGAGCGTTTCCCAAC
GTAGCGCAATTTTGGCTCAAAAACATCAAGATTTTCGAGATCTGAAAAAA
TCGCGTAATACCGAGCCTGAACCGCCGAAAGGAGTTATCGCATCAGGAAA
CGTCGCGAAAATCTCGAACACTTTCGAAGACGGGTCCATCTACGTAAAAC
CGACCGAAGATTTGACGACGATGAAGAAAACCGAGAAACGATTCTCAGGG
GAATACGATAACATTGTTCGTGAAAGAGCCGAAAGTTTTGAATCCGGTGA
AGCTTTCCGACAGAATAAACGTCGGTCTTATTCGACGTACGACGGTTTCC
GACTTGAACGACACGGCTCTGAAAGTGGTTACGCCTCTCCGACGGAGAGC
AACATATCAGACGTATGTGCTCCACCACAGATCAATATCATCCCGCACGA
TGCTGTAGAATTTCAATCTTGGCGCGATGCAGGGGTTTGGGATGAAAGCA
CAACATTTCCATCAAAATCTAACCATTTGAAACCTCCAGGTGCCAACGAG
TTGAGCATGAAAATGACGAATTTATGCGTCACGGAACTTTGAaagagttt
ttgttttttattgctAGTTCAACCCGTTGGGAATCTATAAATTTTACCCT
AGTAAATAGATTGACTTTCAAGTTATCGATTGAAATCTAGCTATAATGGT
GGACTTGTTTTCAGTGGGTCCAGTCTACTTTTTACCCACAATTAAATTTC
CaataacaattttttcaaaataaagagtGCTTTGCTCTTATAATGGAAAA
CCTGACAGACTTTtatttcatgatattcatgacgtaatgttttctacgga
aataccccggttttagcagtggcaaatttaaactagacaaaagttgtata
aaatttgccactactggcaaaaaccggggtctttccgtagaaaacatt Coding sequence (CDS) from alignment at scaffold_146:297139..299786 >TCONS_00048801 ID=TCONS_00048801|Name=TCONS_00048801|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_146:297139..299786 (Clytia hemisphaerica)
ATGCCGAGAGACGGGGGTACACACACAATGGATTTAACATACTCATCAAC
AGAGAATTCTCCTTTTACTTCACCTTTTCAATCACCCAAAATTAGCCCGG
CTTCTTCACGGAACACTTCGCCAACCAGGCTATCCACACGTGGCGGGCAC
TTAAAACGAGCTAATTCGTACCGCAAAAGTAATCGGAAAGGGATGAGTAA
AATGAATGACATGATCCGGAGACGAACACAAAGACACCGGTCACAATCCG
ATACCGACATCACAGCCGACGAAGACAAAACGTCGGAAAAAGAAACGGCG
AAAATCCGACGTGAGAAAAAATCTATTTCTGAGGATTTTAGTGAACATTT
TAAAGTTAATTCTACGCAAAATTCGAGACCGACCTCCACGCATTCTGCTT
ATTCAGATTCCAGTCGACCGGGAACTCCGGACCGTAAAAAGTCCATTAGT
CAGATGTTAGACTTGAGACGTCTCATTGAGTTAAGTCCTAAGTTACACCG
GCATAAAAACCGCGCTAAAACACCTACAGACGAACCTGATAATAAAGAGA
CTTCAGAAAGTGGACCATTATTTCAAGCTACCACGATGTGGGTTCCAGGA
TATGACTTTAAGACAAAACAACAAACATCGCTTGATGATGAACGTGGGCC
TTCGAGGAGTTTTTTATCTCGCCGTGGCTCTAAAGATCGCAACTTGTTGG
CATTGTTAGGGAGTAGCTCACCTAATTTATTGAGACGTGGCTCGAAggat
aaaattgaaaaacaagaaCCGAAAGGTAAACAAAAATACACGCGTTGCGA
TACATCCCCCTTACCGGTAAACTTAGGGCGGCCGCAACACGAGGGCGGTA
CCAAGAACGCATTACGCCAATGTAAGTCGGACCACGGTGAGTTTATGAGC
GTTTCCCAACGTAGCGCAATTTTGGCTCAAAAACATCAAGATTTTCGAGA
TCTGAAAAAATCGCGTAATACCGAGCCTGAACCGCCGAAAGGAGTTATCG
CATCAGGAAACGTCGCGAAAATCTCGAACACTTTCGAAGACGGGTCCATC
TACGTAAAACCGACCGAAGATTTGACGACGATGAAGAAAACCGAGAAACG
ATTCTCAGGGGAATACGATAACATTGTTCGTGAAAGAGCCGAAAGTTTTG
AATCCGGTGAAGCTTTCCGACAGAATAAACGTCGGTCTTATTCGACGTAC
GACGGTTTCCGACTTGAACGACACGGCTCTGAAAGTGGTTACGCCTCTCC
GACGGAGAGCAACATATCAGACGTATGTGCTCCACCACAGATCAATATCA
TCCCGCACGATGCTGTAGAATTTCAATCTTGGCGCGATGCAGGGGTTTGG
GATGAAAGCACAACATTTCCATCAAAATCTAACCATTTGAAACCTCCAGG
TGCCAACGAGTTGAGCATGAAAATGACGAATTTATGCGTCACGGAACTTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048801-exon-scaffold_146-1491911889:297139..299786 | TCONS_00048801-exon-scaffold_146-1491911889:297139..299786 | Clytia hemisphaerica | exon |
| TCONS_00048801-exon-scaffold_146-1510915933:297139..299786 | TCONS_00048801-exon-scaffold_146-1510915933:297139..299786 | Clytia hemisphaerica | exon |
| TCONS_00048801-exon-scaffold_146-1575043694:297139..299786 | TCONS_00048801-exon-scaffold_146-1575043694:297139..299786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:297139..299786 . |
Blast
The following BLAST results are available for this feature:
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