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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048803 ID=TCONS_00048803|Name=TCONS_00048803|organism=Clytia hemisphaerica|type=transcript|length=1490bp
ATTTAGAAGAGAAGCTATTTGTggttttggaactctgttttgataaaatt
aatttGTCATTATGAGAATTCACATGACAAGCCGTTTGTGCTTTGAGAGC
TCTATTTCGATGCTTAGATACAAAAACGTCTTCACTATTTGACAAAttct
attttgataaaattaatttGCTGTGGTGAGAATTCACACGAGAAGCTGTT
TGTGCTTTGGGAGCTCTCGTCTACAAAATTTAACCAACTACAAATAAGAG
GACATCGTCGCTGCTGTGTAGAGCTCATAAAATGAATTTCAACTTATTCA
AGTATTCCATCGGAGCAATTTTCGGTTTCGCAGCAATCATCAGTATTGTT
TTAAACACATTGGTTATTTCAGCAGTTATCAAGGATCCTCTCAAAAGGCT
TcgaaaaatgttcaattttttgttaattcaTCTGTGTATGTGTGACCTTG
CAGCTAGTTTTGTATgctttccgatgacgtcatacGCTTCATTGGCGTTT
GATGACCAGAAGTTATTCCGTACTTTGAACCTTGTGTCGTATATAGGAAC
CCCGATCCTAAACGCCGGATTTTTCACAACGATATGTTTATCTTACGATC
GGTACAAAGCAATAACTGATCCGATCGTCTACCGAGGGAACATCTCAACC
AAACACTTCTTGTATTACATTGGAATCGTATGGGTGCTAGCTTTGATGAC
TATCACTTTATTTTTCTTAGACAAGCTACCAACTCTCATCATCAATGCCG
TAATTAGTCTTATTGTTACAGTAACGCTTTCGATTATATACAACCGCGTT
CGAAACGCGTTAAAAACGCGGAGAAATGGTAACAACCAATCAGAATCCCT
TATTGTATCGGCCTCGTCCAATCAAAAcgcagaaaatgaaaaacgcGCTT
TGAGCACGTGTAAACTGATCTTTCTGACACAACTTATtgtcatcattttc
atcatggttACAGATTTTTGCATTGGGATGTATTATACAAAACACACCAT
AAAAGACAAACTTTCCTTGAGATTTATTTTCTACTTACCAATGCCCGTGG
CTACTATCGCCAACCCAATAATCTGCATTACGAGAATGAAAGATTTTCGA
GATTCAATCAAAGCTATGTTTCGAGCAACATCCAACGAAGAAAACTCTTT
ACGAGAATGAAAGATTTTCGGCTGGTggtattcttcatttttttggccaa
tttcatcatggatattcttataaagtatattcttatcaAAAAGCGTGTAT
CTTAGGCACCAGAGAACAATTCACAAATTCATTATAATATAATTTATTTT
GCAACACTTTTGACAAATATGTATACATAATGAACCAGGAGAAGTAGACT
GGAATCGTTTATaatccgtgtaatacagtagtatgggtgttatatgataa
tacagtAATTGTTTTGGGGTAATATCAGATTGTATAAATAACAATTCTAT
GTATTACAGTTTCTTTAGTTTTGACGCTCTTATTCTCTGG Run BLAST on NCBI protein sequence of TCONS_00048803-protein >TCONS_00048803-protein ID=TCONS_00048803-protein|Name=TCONS_00048803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MNFNLFKYSIGAIFGFAAIISIVLNTLVISAVIKDPLKRLRKMFNFLLIH
LCMCDLAASFVCFPMTSYASLAFDDQKLFRTLNLVSYIGTPILNAGFFTT
ICLSYDRYKAITDPIVYRGNISTKHFLYYIGIVWVLALMTITLFFLDKLP
TLIINAVISLIVTVTLSIIYNRVRNALKTRRNGNNQSESLIVSASSNQNA
ENEKRALSTCKLIFLTQLIVIIFIMVTDFCIGMYYTKHTIKDKLSLRFIF
YLPMPVATIANPIICITRMKDFRDSIKAMFRATSNEENSLRE Run BLAST on NCBI transcript from alignment at scaffold_146:320676..322165 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048803 ID=TCONS_00048803|Name=TCONS_00048803|organism=Clytia hemisphaerica|type=transcript|length=1490bp|location=Sequence derived from alignment at scaffold_146:320676..322165 (Clytia hemisphaerica)
CCAGAGAATAAGAGCGTCAAAACTAAAGAAACTGTAATACATAGAATTGT
TATTTATACAATCTGATATTACCCCAAAACAATTactgtattatcatata
acacccatactactgtattacacggattATAAACGATTCCAGTCTACTTC
TCCTGGTTCATTATGTATACATATTTGTCAAAAGTGTTGCAAAATAAATT
ATATTATAATGAATTTGTGAATTGTTCTCTGGTGCCTAAGATACACGCTT
TTtgataagaatatactttataagaatatccatgatgaaattggccaaaa
aaatgaagaataccACCAGCCGAAAATCTTTCATTCTCGTAAAGAGTTTT
CTTCGTTGGATGTTGCTCGAAACATAGCTTTGATTGAATCTCGAAAATCT
TTCATTCTCGTAATGCAGATTATTGGGTTGGCGATAGTAGCCACGGGCAT
TGGTAAGTAGAAAATAAATCTCAAGGAAAGTTTGTCTTTTATGGTGTGTT
TTGTATAATACATCCCAATGCAAAAATCTGTaaccatgatgaaaatgatg
acaATAAGTTGTGTCAGAAAGATCAGTTTACACGTGCTCAAAGCgcgttt
ttcattttctgcgTTTTGATTGGACGAGGCCGATACAATAAGGGATTCTG
ATTGGTTGTTACCATTTCTCCGCGTTTTTAACGCGTTTCGAACGCGGTTG
TATATAATCGAAAGCGTTACTGTAACAATAAGACTAATTACGGCATTGAT
GATGAGAGTTGGTAGCTTGTCTAAGAAAAATAAAGTGATAGTCATCAAAG
CTAGCACCCATACGATTCCAATGTAATACAAGAAGTGTTTGGTTGAGATG
TTCCCTCGGTAGACGATCGGATCAGTTATTGCTTTGTACCGATCGTAAGA
TAAACATATCGTTGTGAAAAATCCGGCGTTTAGGATCGGGGTTCCTATAT
ACGACACAAGGTTCAAAGTACGGAATAACTTCTGGTCATCAAACGCCAAT
GAAGCgtatgacgtcatcggaaagcATACAAAACTAGCTGCAAGGTCACA
CATACACAGAtgaattaacaaaaaattgaacatttttcgAAGCCTTTTGA
GAGGATCCTTGATAACTGCTGAAATAACCAATGTGTTTAAAACAATACTG
ATGATTGCTGCGAAACCGAAAATTGCTCCGATGGAATACTTGAATAAGTT
GAAATTCATTTTATGAGCTCTACACAGCAGCGACGATGTCCTCTTATTTG
TAGTTGGTTAAATTTTGTAGACGAGAGCTCCCAAAGCACAAACAGCTTCT
CGTGTGAATTCTCACCACAGCaaattaattttatcaaaatagaaTTTGTC
AAATAGTGAAGACGTTTTTGTATCTAAGCATCGAAATAGAGCTCTCAAAG
CACAAACGGCTTGTCATGTGAATTCTCATAATGACaaattaattttatca
aaacagagttccaaaaccACAAATAGCTTCTCTTCTAAAT Coding sequence (CDS) from alignment at scaffold_146:320676..322165 >TCONS_00048803 ID=TCONS_00048803|Name=TCONS_00048803|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_146:320676..322165 (Clytia hemisphaerica)
TCATTCTCGTAAAGAGTTTTCTTCGTTGGATGTTGCTCGAAACATAGCTT
TGATTGAATCTCGAAAATCTTTCATTCTCGTAATGCAGATTATTGGGTTG
GCGATAGTAGCCACGGGCATTGGTAAGTAGAAAATAAATCTCAAGGAAAG
TTTGTCTTTTATGGTGTGTTTTGTATAATACATCCCAATGCAAAAATCTG
TaaccatgatgaaaatgatgacaATAAGTTGTGTCAGAAAGATCAGTTTA
CACGTGCTCAAAGCgcgtttttcattttctgcgTTTTGATTGGACGAGGC
CGATACAATAAGGGATTCTGATTGGTTGTTACCATTTCTCCGCGTTTTTA
ACGCGTTTCGAACGCGGTTGTATATAATCGAAAGCGTTACTGTAACAATA
AGACTAATTACGGCATTGATGATGAGAGTTGGTAGCTTGTCTAAGAAAAA
TAAAGTGATAGTCATCAAAGCTAGCACCCATACGATTCCAATGTAATACA
AGAAGTGTTTGGTTGAGATGTTCCCTCGGTAGACGATCGGATCAGTTATT
GCTTTGTACCGATCGTAAGATAAACATATCGTTGTGAAAAATCCGGCGTT
TAGGATCGGGGTTCCTATATACGACACAAGGTTCAAAGTACGGAATAACT
TCTGGTCATCAAACGCCAATGAAGCgtatgacgtcatcggaaagcATACA
AAACTAGCTGCAAGGTCACACATACACAGAtgaattaacaaaaaattgaa
catttttcgAAGCCTTTTGAGAGGATCCTTGATAACTGCTGAAATAACCA
ATGTGTTTAAAACAATACTGATGATTGCTGCGAAACCGAAAATTGCTCCG
ATGGAATACTTGAATAAGTTGAAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048803-exon-scaffold_146-1491911889:320676..322165 | TCONS_00048803-exon-scaffold_146-1491911889:320676..322165 | Clytia hemisphaerica | exon |
| TCONS_00048803-exon-scaffold_146-1510915933:320676..322165 | TCONS_00048803-exon-scaffold_146-1510915933:320676..322165 | Clytia hemisphaerica | exon |
| TCONS_00048803-exon-scaffold_146-1575043694:320676..322165 | TCONS_00048803-exon-scaffold_146-1575043694:320676..322165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:320676..322165 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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