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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048821 ID=TCONS_00048821|Name=TCONS_00048821|organism=Clytia hemisphaerica|type=transcript|length=958bp
tttagaaCTACCTTGAAAAAGTTACTACCAATAAACACGCAGTAGAATTT
ATCCATAATTTATCCGACAATTTTCAACAAGTTCGTCATGATTCGTGCAA
CGTCAACAGATTCCCGTGTGGTCGATATCAACAAAGTGCAATACAAATAT
CAAACGTTACATTTCCACAGTGAAGtAATGGGAGTATTACAAGACGAAAA
CAAACGTAAAATCCATTCCACATCCGGTATTGATGTGGCTGCAAAGAAAC
GGTTAATGTACAGCAAACAAAAAATCAATACTGCATTTTCTCAAAGCATA
GATAGCCCTttatcaaaattgcaaaatgtacATAGTCCCTTATCAACACC
AAGAAGTCGAAAATCTTCAGTGGTACAAATTAAACGACAAAGCTTTGATG
AATATAGCGACGATGATATGTTGTCGGTAAGTTTATCGTCCGACGACGAC
GACGCTTTCGTCGCGACGGTTTGTTATGTTGACGGATGCTCGATCAAGAA
TAAATCGCGACTGAAATTTTCCGGTAAAAGTGAAAGTATCTGTGAAGGTG
ACGAAGAGTTTTAAGATATGTTAAAAACCGATGAAAACAAAATGTACTAA
AAAACTTTACTTTGTAAATATTGTAAATAAACTTAAAACAGTAAGATTTt
tatttaagaatttttttgaatcatttttttgtaaaaaggaaGTTTTTTTG
GGGGAAACAAATATCTATACCTAAATTTATTTAAAGACAATTTGTTTTAG
ATACTTCCCTACTTGTATATATATTCCCAAACATACAAAGTTTAGATTTC
GATAAGGGGTACAAACTATTGCTCACCTTCATCTGCTGCAACATGGTCAG
tttcatccttttttgacatCGCTAACACTGACCTTCATATATCCTttgac
caagttactcaatgccggccaagcaaaatatttaggattggagttttttt
gaaattgg Run BLAST on NCBI transcript from alignment at scaffold_147:49531..54604+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048821 ID=TCONS_00048821|Name=TCONS_00048821|organism=Clytia hemisphaerica|type=transcript|length=5074bp|location=Sequence derived from alignment at scaffold_147:49531..54604+ (Clytia hemisphaerica)
tttagaaCTACCTTGAAAAAGTTACTACCAATAAACACGCAGTAGAATTT
ATCCATAATTTATCCGACAATTTTCAACAAGTTCGTCATGATTCGTGCAA
CGTCAACAGATTCCCGTGTGGTCGATATCAACAAAGTGCAATACAAATAT
CAAACGTTACATTTCCACAGTGAAGGTAAATTTTTGCCAAGCAAGTTTTT
TTTCGTGGTGTAAAACCTTTAATCAACCTTTGCCACCGGGATTGAAAAAG
TATATGATCTTGTGTATCATAACAACCTTccttctattgcaattttaatT
ACATCAACAATTTCCTGCTATAAAACCTTGCTAAGTTGACGGGATTCTGA
GGCCAATTTGTAGCAAATCAGACTCAACGACAGTAAAGGCACCCTTTTCA
GAAAACATGAACAACATGAACTTTTTCGATATATGAACATTTCATTTTTT
AGGCTAAAACGAAGTGTTTTCATGATGCTTTCATTAACCAGCCTGTCAGT
TTTTACTATTCTATGCCTGGTAGACAAATTATGACGTTTTTGACACATGA
AGCATGCGTGAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAATAGATAAATGCTTATATATACTCAAAGACTCAAATACTTATT
CTAAAAATATCTAGAAAACCATAATTGCTAATGCTAATGGTCTAGTGTAT
TTAAGGTAAAAAAGTTAACCCTTTTCCGTTTCTCTTCAGCTCATAATAAA
ACCCAAAAGAGCAGTTATCTATTCGTCATATCTTTATATATTTAGATATC
TAAAACTCTCGGGAAAAATTTGCTACATTGATGTATCAAAAGTCATAAGA
CTTTTTGtacgaaaaattgggatgagTAAGGTCAAAAGCCACTATTTTTA
Ggatttaaccctattcggcctagggggcggggctgtttctgttcggaggt
caaattattggtaatagctcctgaaataaaagggcttttgccatgaaatt
ttctgtaaattcctaacttttatttagcttcaaaataaaaaaaaatttga
tacctaaaaattttcacaccttgagcataatggcatttctgacagtaagg
tgtcacaaaaattgacacttttccaatacaaatttactttttatgtcaaa
tatatcgtttaaaccgtaatttaatgaatatttgggataaaataagcatt
ttaaactcaggcaacttttttctaaagcctttgttagaatacaataacta
tttataagaacaatgggcatgatgagtgacccCCCCCCATAGTTccgaac
cgcccctaaaagcctagattgaatagggttaagcttTTATAATAAGTTtc
caaaagttatttttttgttcGGCAAAAGATACATCGTttagtgcaaattt
ttttttcaccgaaaataaggtcctcaaagttAAAATATTTGTCTTCAAAA
GAAAGCTTTCTCTATGATACTCGCAGTAATTTCATTTTGTATTGCGATCT
CGCGTATCTTGCGCTACTTGCGcaacctttttttattttactgatgTATA
AACTAAAGAACTAGGTTTCAGTTTGGATATGTCGTTATCACCACTTTGAT
AAAAAAGGTTTCAGTTTTAAATGTATCTTTATTATCGGGACTGTCATCTT
TTTGTTATTCTAACCCAAAATATATTCCATTGTATTTTGATAAATTATAC
ATACCCTTATGCTTAGTatatttaaaagcttttttttccGCTTTTGCTTT
CTTGTTTTTCTTCTAATGGANGTCATAAGACTTTTTGtacgaaaaattgg
gatgagTAAGGTCAAAAGCCACTATTTTTAGgatttaaccctattcggcc
tagggggcggggctgtttctgttcggaggtcaaattattggtaatagctc
ctgaaataaaagggcttttgccatgaaattttctgtaaattcctaacttt
tatttagcttaaaATTTGatacctaaaaattttcacaccttgagcataat
ggcatttctgacagtaaggtgtcacaaaaattgacacttttccaatacaa
atttactttttatgtcaaatatatcgtttaaaccgtaatttaatgaatat
ttgggataaaataagcattttaaactcaggcaacttttttctaaagcctt
tgttagaatacaataactatttataagaacaatgggcatgatgagtgacc
cCCCCCCATAGTTccgaaccgcccctaaaagcctagattgaatagggtta
agcttTTATAATAAGTTtccaaaagttatttttttgttcGGCAAAAGATA
CATCGTttagtgcaaatttttttttcaccgaaaataaggtcctcaaagtt
AAAATATTTGTCTTCAAAAGAAAGCTTTCTCTATGATACTCGCAGTAATT
TCATTTTGTATTGCGATCTCGCGTATCTTGCGCTACTTGCGcaacctttt
tttattttactgatgTATAAACTAAAGAACTAGGTTTCAGTTTGGATATG
TCGTTATCACCACTTTGATAAAAAAGGTTTCAGTTTTAAATGTATCTTTA
TTATCGGGACTGTCATCTTTTTGTTATTCTAACCCAAAATATATTCCATT
GTATTTTGATAAATTATACATACCCTTATGCTTAGTatatttaaaagctt
ttttttccGCTTTTGCTTTCTTGTTTTTCTTCTAATGGAGTTGTGCAGAA
GTTAGAATTCTCAGGAAGATTAAAAGTTAAAAGTATTTAAAACAGTATTG
GGTAAAGAAGTCAATTGTAGAAACTAACTTTTTACTCCTGAGGTTCGTTT
CGGATAAGAAGTTCTTCAATAACTAAAACGCGACAATATTGCATACACTT
ATTCTGGGAAAGCGATGTTCAGTGTCAGTTGCTTAGCGGGGGAGTTTAGC
AAATTGAATTTAGTTTACATTTAGAGAATCTAATGGCATAAATTTAAttc
cattttgatttgtttattttcttttagaaCTACCTTGAAAAAGTTACTAC
CAATAAACACGCAGTAGAATTTATCCATAATTTATCCGACAATTTTCAAC
AAGTTCGTCATGATTCGTGCAACGTCAACAGATTCCCGTGTGGTCGATAT
CAACAAAGTGCAATACAAATATCAAACGTTACATTTCCACAGTGAAGGTA
AATTTTTGCCAAGCAAGTTTTTTTTCGTGGTGTAAAACCTTTAATCAACC
TTTGCCACCGGGATTGAAAAAGTATATGATCTTGTGTATCATAACAACCT
TccttctattgcaattttaatTACATCAACAATTTCCTGCTATAAAACCT
TGCTAAGTTGACGGGATTCTGAGGCCAATTTGTAGCAAATCAGACTCAAC
GACAGTAAAGGCACCCTTTTCAGAAAACATGAACAACATGAACTTTTTCG
ATATATGAACATTTCATTTTTTAGGCTAAAACGAAGTGTTTTCATGATGC
TTTCATTAACCAGCCTGTCAGTTTTTACTATTCTATGCCTGGTAGACAAA
TTATGACGTTTTTGACACATGAAGCATGCGTGAGGGGTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNcataagggtaccttttctcattcctca
aaagtctctcaaaggggtacaaattcaaaagttagtctctgaaagggtcc
caaaatcacaaaaatcaaaaatttttctctcaaagggtcacgatttccaa
gaattttgcccaaaatttggtgaacttcaaaccaaaatttggaaaaaatg
gaccaaaatttaggaaaaagtctctcaaagggtcccaaaatcaccaaaat
attgtctctcaaagggtcgattttcgattttcggctcggacatacccgtc
acctcgcaaacctagtaccccccggggtaACACTCAGGATCGTTCCTTTA
CAGTTTCAAATATACgagtttaattttttcttattttatagtAATGGGAG
TATTACAAGACGAAAACAAACGTAAAATCCATTCCACATCCGGTATTGAT
GTGGCTGCAAAGAAACGGTTAATGTACAGCAAACAAAAAATCAATACTGC
ATTTTCTCAAAGCATAGATAGCCCTttatcaaaattgcaaaatgtacATA
GTCCCTTATCAACACCAAGAAGTCGAAAATCTTCAGTGGTACAAATTAAA
CGACAAAGCTTTGATGAATATAGCGACGATGATATGTTGTCGGTAAGTTT
ATCGTCCGACGACGACGACGCTTTCGTCGCGACGGTTTGTTATGTTGACG
GATGCTCGATCAAGAATAAATCGCGACTGAAATTTTCCGGTAAAAGTGAA
AGTATCTGTGAAGGTGACGAAGAGTTTTAAGATATGTTAAAAACCGATGA
AAACAAAATGTACTAAAAAACTTTACTTTGTAAATATTGTAAATAAACTT
AAAACAGTAAGATTTttatttaagaatttttttgaatcatttttttgtaa
aaaggaaGTTTTTTTGGGGGAAACAAATATCTATACCTAAATTTATTTAA
AGACAATTTGTTTTAGATACTTCCCTACTTGTATATATATTCCCAAACAT
ACAAAGTTTAGATTTCGATAAGGGGTACAAACTATTGCTCACCTTCATCT
GCTGCAACATGGTCAGtttcatccttttttgacatCGCTAACACTGACCT
TCATATATCCTttgaccaagttactcaatgccggccaagcaaaatattta
ggattggagtttttttgaaattgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048821-exon-scaffold_147-1491911889:49531..49705 | TCONS_00048821-exon-scaffold_147-1491911889:49531..49705 | Clytia hemisphaerica | exon |
| TCONS_00048821-exon-scaffold_147-1510915933:49531..49705 | TCONS_00048821-exon-scaffold_147-1510915933:49531..49705 | Clytia hemisphaerica | exon |
| TCONS_00048821-exon-scaffold_147-1575043694:49531..49705 | TCONS_00048821-exon-scaffold_147-1575043694:49531..49705 | Clytia hemisphaerica | exon |
| TCONS_00048821-exon-scaffold_147-1491911889:53822..54604 | TCONS_00048821-exon-scaffold_147-1491911889:53822..54604 | Clytia hemisphaerica | exon |
| TCONS_00048821-exon-scaffold_147-1510915933:53822..54604 | TCONS_00048821-exon-scaffold_147-1510915933:53822..54604 | Clytia hemisphaerica | exon |
| TCONS_00048821-exon-scaffold_147-1575043694:53822..54604 | TCONS_00048821-exon-scaffold_147-1575043694:53822..54604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_147 | supercontig | scaffold_147:49531..54604 + |
Blast
The following BLAST results are available for this feature:
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