TCONS_00048835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048835
Unique NameTCONS_00048835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048835 ID=TCONS_00048835|Name=TCONS_00048835|organism=Clytia hemisphaerica|type=transcript|length=1215bp
AGTTTTGAACCATTGATATTCCACAAACCTGGGAACGTGACCTAGAATGA
TATCAATACATTTCGAAATGTTAATTTAACATTGCAACATTTATGGGCTG
ACCCACATACCAGAAGAGCGAGATGGGTGCTATAAAAGAAGCCAGAGAGA
TGTACTGTCAAATCGTAGAAGATAACAACACTAAACGAAAGAAGAAATTG
TAGCATACCAAAAAGGAAAACTACCTAAACCACTGACAAAATGGctacaa
aatattacaaaaacatGTCCGAAAAAGATTTTCTCGATGTTTTCCGTAAA
GAATATAAAGTTGATGCCGTCACTTTTATGAAGGCTTTTGAAGAGGCAGA
TGAGGATGGCAATGGACAAATTTCTTCTTCAGAACTCATTaaatttttaa
aagcatTGGGTGTGGACGCCAAAGAAACTGAAGAACTCAAAGAACACATT
ATTGAACTATACGACAAAAATCATGATGGAAAACTTGGGCTAACAGAACT
CTCAAAATTATTACAATCTGATCAAAATGTATTGAAAGCCTTCGTCGAGg
GTGAAGACTTAACAGAAGAAAAATTCAATGAAGTTTTTGCTCACTACGAT
CGCGATAACGGTGGTACGATCAATAACAGTGAATTGAGTGGTTTCTTAAA
AGATATGAAGTCAACACAAGATGTTAATGTGGAATCGAAAGAACTGAAAG
AATACGAGATTTGGATCCTCGGTGAAGCAGATAAAAATAATGATGGTGAA
CTTTCAAAAGATGAACTTCGAATGTTATTCTTCGGTTAAAAACAAGACTC
CACGATAAAAAAATATCGTATTTGTATACTGAGAATTAGCTTTTTATAGA
GTAAATTTATAATGTGTTAttaatttttgtacattttcatATTATTTCAA
ACTAAATTTTTGACTCTGATACTTCTGTCAAATATGCTACATTAATTACC
AACTAGTATAATCAACATGGTACATTATAATATTTCGTTCTTATTTcttt
ctttgaagaaaattacTCTTGATTTTAAGATGTTATACAACTCAGAGAAA
TTTAAGGACTCGTTATCTTCATTGAACTACAAAGAAGccattgatttttt
ctgcaaatattatataattgtttttttgtaaacttctactatattatata
ttatatctATATTCTTATAATATTTTGATGATTACATCGAGACATCAATA
ATGCAATAAACATTC
Run BLAST on NCBI

transcript from alignment at scaffold_147:240094..253861+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048835 ID=TCONS_00048835|Name=TCONS_00048835|organism=Clytia hemisphaerica|type=transcript|length=13768bp|location=Sequence derived from alignment at scaffold_147:240094..253861+ (Clytia hemisphaerica)
AGTTTTGAACCATTGATATTCCACAAACCTGGGAACGTGACCTAGAATGA
TATCAATGTAAGAAGTGCGTTTCTgaaaaaggctttaaaaatccACGTTG
CCTATCTATTCcagtttttagatattttattaATCATGAATCCTAATAAT
TTTAACCTTTCGTaggtttgcgaccgcagtcgagggcgacccgaaggctc
ccttttctttAGCTGTCTATCCAAAGGTAGAGGAGGTTACCATTTCTTTT
CCTTGACttttccacttacccttgatccgtctcttcaGTTTCAGAGCTTC
AATTAgcgaggcatcaagtaccattttgggagaATTTGGTATGACCCTAC
TGACGGTCGAATCCACAACCTTGTGCACCATAGCTGAGTATGCTACGTAA
TCACGGTTTCTCGGACGGTAACGCTACACTGTAAtcacctccgccactgc
tttCTCCGCCTCGGGCTAACcaacgttttcaaatttatcccgcctcctaa
attattatttttttagtgatcttgtgtagacgatccTCGTGTATGTAAGA
CACACCAAAAAAGAATAGTTGTTTTTATGTGCTAAGGAAGGGTCTATAGC
ACTATAGCCTTcaattatttagattttttcaaagccgGCACAATTTTAGA
TCAGGataatttttgtagatttttataaatttttctgTCTAAAGCTTCCC
CATAAGTAGAGATATATTTTAATATAATGATGTTGCATGGGGTGCAAATT
AATCAAAAGAGTTGTAAGCTAGCCCGGTCTGTTAATTTCTCCTTTTAGAA
AACTCACAGTTGAACTGCTTTCTTGTTTCTTAGACATTTCGAAATATTAA
TTTAACATTGCAACATTTATGGGCTGACCNTTCTTAGACATTTCGAAATG
TTAATTTAACATTGCAACATTTATGGGCTGACCCACATACCAGAAGAGCG
AGATGGGTGCTATAAAAGAAGCCAGAGAGATGTACTGTCAAATCGTAGAA
GATAACAACACTAAACGAAAGAAGAAATTGTAGCATACCAAAAAGGAAAA
CTACCTAAACCACTGACAAAATGGTAAGAAAATTGATAAACATTTCAAAT
AGATTTCTGCAGCTTTCAGGCATCAAAAGACATCGGTTGCGTGTGTACCA
GGGTCGAATGACGTCAAGTTCTTCAATGTAACGATTCAATACACGTGACA
CCATGTGGCCCTACTTATCTCGATACAATCCTCTAACTTCCAACTAGTTG
TAATAGAGGTGCCTTCTTTTAAATTCATtggaattttaataaatttctat
AGGTTCTTTCAACTATTGGTGAGTCCTATCCTAGTAACTCAGTAGCCAGT
AGCTTCTTTATTATATCGTATTCCTAAAATGGAAATTAGAACTTCCGAAA
GAAGGAATCGCgcaagaaattttaaaagagaTACAATGTTAGGCTTCAAA
CTGGGTTTAATTTATTAACagtcagattttgaaaaaaatgtaatacTAAG
GTTAGCTTCCTTTGTCTAATGCTCTTTAAATTATTTATCATCCTGTGTGA
TTCCTTTACCGGTCAAACCGGGGGCTATTCCGGGACACTTTGATTCAAGG
ATTAGATTATCAgaattataattttaaaaagtcttTCCCGAGAACTTCCA
TACAAAGTTTTAAATTTATACAGAAAGGTTCGTCGGTCTACTTTATTTAA
TGTTGACTTGATGTAGAGCAATATAGGTAGAATTGTTGTAGAGACTTAAT
tggactaattttcgcgagaattAATTTGGCATTTATATTAAAGTTTTCTT
TAGTGTAATNAGAGACTTAATTGGACTAATTTTCACGAGAATTAATTTGG
CATTTTCATTAAAGTTTTCTTCAGTGTAATTTCGTCGAAAACCGAGTATT
TGCATAAAATTTGGCAAGACGAAAAGTCGATCAGATATATTAGCGATCTG
CCTTGGATTTAGGCTCCTTTAATATAGGACTTTAAAACATTAGAACTTTG
AAATATAGATACAGTCACTCTTTGATTAACTTAATCGATTTTAGAACAAT
TAGGTTAATCTATATGAGGGGCTGACTATCAGAAAAATAATCCATTTTTG
GTTAATTATTTTTGGTTTCTTGTTAACCAACGTAATTAAAATTCCGAaat
tgtaattttctttttggtttgACCTGGACTGCCCAGTGAACACGATCTTT
TTCTCAAGCTAAATGACGCACATTCCTTTAATTCATGTCTTAGTTAGACG
GACGATGTTTTATCGTTTTGAGCCATCCGGGTAGCTTAGGGGGTGAACGG
GTGTTGgaaacaccgaaataccgacgttTTTCTTGGATCACCGTCCCACC
GACAaccaaaaattgctaaaattctTTCTTTGTTGTAACACGGCACGTTT
GACAACGTAATATCGTGTCCTTTTATTTTGAACACCGAAACATCGACGGA
CTAATACCGTCACATCGCCAAACCCGTATGTATTCTCCCCCTTTTTAGAA
CATATATTTCGTGTAATACACTTTTATTATATCAgaagaattttaaaaga
aaaattaggctcaaaattgccaaaaaataagaacaattaaagaacaatgc
tgagcctaaaattactcaaattcaagcaatttaggggttaaagtagtaaa
aatttgaatataacgCCTAAAATTCCTCAATTGCATCttagaaataagaa
caggataagaataatttgaggctcaaagtcccaaaaaataaatttctggt
tcttataaaaaaaagtgtattcgattcattaaaataaatcatTGTTCATC
AGTCTTCAAAGTGATCTGTCAACAACTTATGACTTTCGATGACACACTGT
TATAAGATATGACAATAGCAATACCCATTTTACAGACAGTCCCGAAATTA
TTTCATCATGTTTAATTTACTTAGTTACTACAGTATTTGGTGACAAACGT
CTGTATTCAAATGTATTGTATAAATTtgtgtttgcttgtttttcagATTT
GCTAAGATATCGTATCCCATATCTACTTTAGACCCAAAGAAAGGATTTTT
TGTCATATACGTTTTTTCTAttcgtacacgttttttacataagaacataa
agtATAATAAAAACATAGGGCTTCGAGACtagaaaatcttaagaacattc
taagaacatttcaaggcttaaaacccagaacattaaggaaacccgaaggc
ttcaaaaatatctttaacattcttataaaaaacgtgtacaaaaataataa
catcaatATGCTAACGAATTTGGTGTCCTGATTACATATCTAGTTAGTTG
GTTATGAAAGGGAAACGCCATCTTTGTATCCAATTAGAGATCATGTTTGA
TGGTGTACAAATTGTCGTGGATTGTTTCGATTGTTTTGCTCTGTCATATA
TGGGTACTAATAGGACATTCTCTTTCATGATTAATTTGCGTTTATTGAAG
TAGTCCTTGTATCAGGATTGAGTATATTATCCAAGGAATGTAAACAGAAA
AGCTGTCCTTATCAGCAGAGGACCCACCCAGTCTCATAATATTATAAAGT
TTATGTGAGGTAGGTCATCCTCACATTGGTAAAACGAAAATCACATTTGT
ATGGCTTTGGATGAGGAGGATAATTTCTTAAGTGATGATACAGGGTGTTC
AATATTGCTCTAAACGTCGTAATCGATTGAATTAGAATCTGGTATATTGT
CTACTCGTGCCTGAAATGTTTAGGGCATTTTGTTTTGGAGATGGGGAGAA
GCATAGAGATACTAGGTGGTGGTACTCGATCTAGCATCGTTAGGAAAAGC
TTAAAACAAGCTTATACAGTCGACGCTCTCTAAtccgatcttcaagggga
attgggttttcattgaataaggtcgaattagagagtgtcaactgtacaTT
CAACATAAAGGATTGGGTCGGTTTCAAAGCGAGAGCAAGTACAACTTCAG
TCGAGGTTGCTTAAATTGAAACAAGGCATTTGCTACGATAGTAGATTCTA
AAAACAACGATAGACTCTTGGGAAAAATCCCATCTAAGATTTCTTGATTT
TNTCTAAACGTCGTAATCGATTGAATTAGAATCTGGTATATTGTCTACTC
GTGCCTGAAATGTTTAGGGCATTTTGTTTTGGAGATGGGGAGAAGCATAG
AGATACTAGGTGGTGGTACTCGATCTAGCATCGTTAGGAAAAGCTTAAAA
CAAGCTTATACAGTCGACGCTCTCTAAtccgatcttcaaggggaattggg
ttttcattgaataaggtcgaattagagagtgtcaactgtacaTTCAACAT
AAAGGATTGGGTCGGTTTCAAAGCGAGAGCAAGTACAACTTCAGTCGAGG
TTGCTTAAATTGAAACAAGGCATTTGCTACGATAGTAGATTCTAAAAACA
ACGATAGACTCTTGGGAAAAATCCCATCTAAGATTTCTTGATTTTCCGTG
TTGGCAGATTTACTATGCTATTTGCTATATGACTGTCAAAAATATATTCT
TGTACGAAAAAACTGTTGATTACATATTAATCCTCGTGATTATCAAATCT
TTTCCTTGTTCAAAAAGTTCGAATCTTATTTCAATTTCATCCTTGGTTTT
TTACTCTACTATAAGGTAACTAAATTTGTAGGATACAATTTTAAGGATAT
AATTGTCGTGTTATATAATTATTGTAAACTATAGTTTTAAACCAGTCTTA
CCTATTTCTCCCTTTTAAATCGAGTGGTCAAGAGTTTTGGCCTTACGTTT
GGGACTATAATGGTTGATTTTGATGTATACACACGTCGAAAAAGATTATG
GATCGATGTATATTTGGTCACATTTTTGGACCGTGACTTATATTTATATT
TGGGCTAAGTATTTATGTTTtgggaacaaaaattttttaaataatatttt
gacaaaCTTGTTTTGTGTTTCCTTTCGCCATTAAAAGTGTCGTGACATTT
GTTCATAAAACAGCTTTGTGCTTGGGTTTGCCTATGTGatatttttaatc
gaaaatCAGTCACGCATACTAACTTCAACAGCTAGTGTTTGGAAAATAGA
CTCAATGAAAGTTAAACCTAGTTACTCTTAACATAGGGTATGTAAGTCAA
GGTCCGATGTTTCTCTTTGGAAATTTCTGGTATGATGCCTGGACGCCTTT
CATATATTAAGTCACCTTAGTCAAATATAACGGCTAAAATTATTAAAGCC
CTTTTTGTGTTTTGTGTGGTTATGGTATCACGTTTTTGTTAAGGTTTTGC
CGTGCTGTTCGTGTTTGCATTCCggtagaaaaaaaagtttgtttttctct
ATGATCTAtgggttttcttttttttgtttgttaataTAGAATATTTCAAT
CATCTAAAACTAAAAATACCCATGTGAAGCTCTTGGATGTTTTCCGTAAA
AGCTATATAAAGTGACGCcgtccaaatttgaaatagcACTTTTTTCTATA
GACTAACCCCTTGATATTTTTAGTAGCAGCCACCAAGTCGATACCTTCAC
AATTTGGCATAGCACTTTATTCTACAAGTTAATCTGAAAACAAGACAGGC
TTTTCTCGCAAAACCAACATTTTACGCCAAAGCATATCTTCTTTGTTTCC
AAAGAAGCCTGTAGAAAAGTACCGTAACGTGGACGAAGGCTCAAGAAACT
CTGTTCATCGTTTCAAGATTCGTTAATATAAGGGAAATTTTAAACTCGAA
ATCCGAATCTAAATGGTTACGAGTGAATGATATTTGATCAATAAGAAGAG
AACTGAATTTAGTTGTATATCTAATACTTGATGTGTTTCTTTGTAGGcta
caaaatattacaaaaacatGTCCGAAAAAGATTTTCTCGATGTTTTCCGT
AAAGAATATAAAGTTGATGCCGTCACTTTTATGAAGGTTAGTTGTTTGAC
TCGCTACAttctacacccccttctcacagacccactggatcttcttgtgg
aaaattatactccaatttttgtccccgctgaaaataatcagtcaaggaaa
tcctcactgcaaaatagtGTGCTATTTTTTCGATCCACCCTGAATTTTCT
TGCTGGAAAtcataaaagaattgaaatcccaagaattgaaaaatatttgg
ttGGTATGCCGGTATTTCATGAAAAGATTACCGGTATTCCAGTACTTTTT
ATCCACGGAAGCCCCTCACTATATATTTGAGGGTACTTTTAGGCAACTCT
gactttcaaatgaaaaaatgagTCACTAgcagaattaaaaaattaattca
tcTCTTCATCCGACTCTTTTCCGGGAAATAACGCTTTAACAATTCTCGTC
ATTAGTCCCGGGAATTTAACCTAGATTCCCTTCATTATTTCTTGgctatt
ttttatgaataaccGAACTGGACTCGTGTAAAACTGGAAGGAATTAGCTA
CAGTTTCATCGAATGTGTTACAATCGTTTAGCTTTAAATTCCATGACATT
TGTGTATAAGagcacccctgtctcgcagccccgaTCGAATTTTTCCAACA
GCTTGAGATAAAAGTTTTATCGAATTTCCAACGGTGATAGAAGCTCTTTT
GTTCCAAGCTCAAAAAATCAGAATGGTTTTGGACCGCaattttttctatt
gaattttaaatggggATCAAGGGATTCAATCAAAGTCCTTTTCccaatgg
ggctgaaattgaagggtatttttcccaccggggaccaaatttttgaccaa
atttttgaccaaattttccaaTGGTCAGGTTGGAGGTGACACGGTGGTGT
ATATGatagattttttttgattttttttttatttcttactATAATTTTTT
ACTTTCCAGGCTTTTGAAGAGGCAGATGAGGATGGCAATGGACAAATTTC
TTCTTCAGAACTCATTGTAAGTTTGCTGTtttaaaacttcatcatcattA
TTGACAGGGAGTCTTTGATAACTGACGGAAAAACGCTGGAGATTTTAGGA
ACTTAAACTCTCATATGATTATTTGCAACGAGATCTTTAAGCCTGATTTT
TGGACCTCAAATGTGTTAAAATATgtcaaacgtttttttttaattcaatg
aTTTTGAAATCCTGTCAGAGATtaaaaatggttgttttttgTACCTGGAT
TGGTTAAATATTCTTATCCACTTTCTTTACAActagaaatttttaaaagc
atTGGGTGTGGACGCCAAAGAAACTGAAGAACTCAAAGAACACATTGTAA
GTAGTGATGCCGGTCACGGTTTTCTTGATCTAGGTCCCGTAAAAGTATCA
ATATGAACAACACCTGATTTGTAACTGTTCAAATTAAGAATGAGctgtac
atgtttttcttttatgagAACGTTCAAAGAATTTTTAATCTTCGgatttt
cttagtttttttagttttgcgagatgctcttaaaatgttctcattttttt
caccattttgtgagttaTCTTGTGTAATTTCTTATCAACTTTCATGTTTT
AAAGTCCACAAATCTTCAAAATGTCCTAACTTGCCGATAACTTCGTAGcc
ttatgtttttttatattaagAATTTCTTCAAATATAACAGACGTCTAAAA
TCGTTTGGTTGAGCTAGGatctaaaacatttttctgtGTTCCTAACTGCA
TCATCCGTTATAACTTACTAGAAAATGTTATAATAGTGTACAAGCTTCGC
TATATTAATTCTAGATTGAACTATACGACAAAAATCATGATGGAAAACTT
GGGCTAACAGAACTCTCAAAGTAAGTTGTTTAGAATCTTACCACAAAAGT
ACCACAAGTTTGACAGCAAAAACTCTGAGGCATTAGGTATGATCATTTAT
TTACAAGAAGAACCGTATTTAAAGATGTCTTATTTTGAAGGTATCTTTTT
CTTGTGTTTCATGTGTTTAATCATATCCTTTGCATCGtattctgaaaatg
aataatCAGTAACTTAATTTCGCTTTTCGATTTTAGATTATTACAATCTG
ATCAAAATGTATTGAAAGCCTTCGTCGAGGTAAGTTTGCTTGTTCTTTTT
GCACTATGCTAGATATCCTATCCNTTTCTTTTATGAGAACGTTCAAAGAA
TTTTTAATCTTCGgattttcttagtttttttagttttgcgagatgctctt
aaaatgttctcatttttttcaccattttgtgagttaTCTTGTGTAATTTC
TTATCAACTTTCATGTTTTAAAGTCCACAAATCTTCAAAATGTCCTAACT
TGCCGATAACTTCGTAGccttatgtttttttatattaagAATTTCTTCAA
ATATAACAGACGTCTAAAATCGTTTGGTTGAGCTAGGatctaaaacattt
ttctgtGTTCCTAACTGCATCATCCGTTATAACTTACTAGAAAATGTTAT
AATAGTGTACAAGCTTCGCTATATTAATTCTAGATTGAACTATACGACAA
AAATCATGATGGAAAACTTGGGCTAACAGAACTCTCAAAGTAAGTTGTTT
AGAATCTTACCACAAAAGTACCACAAGTTTGACAGCAAAAACTCTGAGGC
ATTAGGTATGATCATTTATTTACAAGAAGAACCGTATTTAAAGATGTCTT
ATTTTGAAGGTATCTTTTTCTTGTGTTTCATGTGTTTAATCATATCCTTT
GCATCGtattctgaaaatgaataatCAGTAACTTAATTTCGCTTTTCGAT
TTTAGATTATTACAATCTGATCAAAATGTATTGAAAGCCTTCGTCGAGGT
AAGTTTGCTTGTTCTTTTTGCACTATGCTAGATATCCTATCCAGAACCTC
CCTTCCCAATTCGAGATTTTCGAGAGAAAAGAAGTTTGGGAAGGTTTTAG
CCAATCAAACGGCGACTGAAAGCTTATCGACTTTGGCTTATCATTAAACT
GTTAGTTTGTTAGATATTTTCCAGGGAAGTGATATTCTGTGTCAATGACg
agttatcttttttttttcaattccaggGTGAAGACTTAACAGAAGAAAAA
TTCAATGAAGTTTTTGCTCACTACGATCGCGTAAGTTCGACAGACTCTAA
GATCGCAGAACTTTTTGCCATTTCCCTAATCATTGACTATAAAAGTTTTG
TTCGTAAAAAATTATGTGCTGTATTCTTAGTGTGTGTTACATGCAAACCT
GATTAAAATTACTTTAACCGGGCAAATCTTCACGAGATTTAATCTTGAGA
GCAAAAAATTTGCGAATTTaatttggatttattttttgcaggaatttaat
ttcgcaaatcagCCAAGAAAACTAGCTTAATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcggatttttcataccaatt
ttgaaaaacaggcggcaacgaagctcgcttcaaagagacaataaaagata
gatgtccagtcgtttatatgttcatggctTAATACACCAGATTTTGTAAG
ATCAGCAAATTAACAGGGATACGAATTTTTAGCCGGaaataagaatttga
atatttcacgtagatttatttttgcgaGATATTCTTTTCTCGAAAAAGGC
CTAAATTTGCGAAAACAcaaaattaaatccaaaatACATATTAATCCGAA
TAAAATAGAAGATGTCACTGTTCTTTCATCAATTGATAGAATTATTCAAA
GTTGAATTTAGCTTATATTTTGCTTCAGGATAACGGTGGTACGATCAATA
ACAGTGAATTGAGTGGTTTCTTAAAAGATATGAAGTCAACACAAGATGTT
GTAagtaaaactttcaaatttaaatCATACTATGGGGTGTACGGGTTTAA
CCGTGTGGCGGTATTTACCCCTTTTTTCGATCGAGAGAAAAAGTGACGGT
GTTTCGGTATTAAACATGCGGTGACAAAATaacgaatttttcgaaaaaaa
ttactGTTGGCGTTGACGATGGTCCAACAAAAATGCGTACGACCATTATA
TTCATGGTATTATCCGCGTAATGTTTTTTACGGAAATAgtccggtttttg
ccagtagtgatAAAATTTCAACAGTTTTTCTCTAGTatatatttcttaaa
tttgccactactggcaaagcCGGGGTGTttctgtagaaaacattacgttt
TACGTTATGAATATTACGAATCTATGTTTTCTCGACATTTTGTCCTTATA
ATTAATTTGAAAAGCCTACACCTAAACCTGCTGGTGTTACCCCTTCAATG
AATAAAATACTGTTTGTGACAGTTTTCTACTAAAAAATGGGATACTCTCA
TTGATCCaaagatattcttgttttatGATGTTTATGATTTGAAAAGGAGG
CGCGCTTCTATACTGGCAAGAGGAATAAAcgaaagaatttctcaaaattt
gtgatCTTGTGGTGCTGGAGACTGTGACCAAGTGTCTTTCTTTTGTATCG
AAAGGCTGTGTAATCGATATCTAGGATATACTTTAAATTATGTACTTTAA
GGcacaatacacaggttgcaaaattcaAGACTGTAGACAagtcacgcttt
tactcgaatttttatgtgcttgttacatgacatcatagtataagaaagcc
gctgCTGGAATATGTACCAACCACATTGTCttctcagttaattgctgttc
tatctctgtctccgagctttataagaacatcaagatgctcagtttattat
tggtagatagcttttgaaatttttctcttaatttccttcacaaaaagttt
ttttattgctagatatctttgaatctgtacccaatagaacacttgaacta
atttggaCATATAGACCAGCGTCCGTGTTCGATAATTCTTTCACttcata
ttttaggggtattttgtggaaaaaatagtttttcgccaaaattgagatta
taagaactatattcaagatgacaactttcttgtcagtttgaatgataagt
tttgaaggtgctggcttgaaactttcacagtattatctagatgtactttt
tcattgatttctaaacagatttcactgaaatattgcgaaggcattcgagg
cactttgtttatttttgatttctttcagcgcagccattttgtgcttgttt
aaatttcttattgttgatctttcctttacaatgattttataatgcaagtg
tattatcaagggtatatcattaatgtctaaaacactgagaagtaagtatt
aacgacaaaccaataaaatttaccattaaagatgctacattactgatctc
TTGATCtaaaaatagtcatcaaatacgacagagatagaacaacagaagtt
cactcaagtgagttacggcatgtccaaagaaaaagtgaaccagttccact
cattttcaaaatgtcaaacatagctggaaagaagcgccttGTGATGTATA
TCAACGTGAtaggtgttagaaaaatttaacttaaggctataagaagttat
agcccaaaaacctgtattatgacgtcataaacattacataacattacgtc
ataaaactaaaaatttgaatatctcNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTG
AACTAAAAGTCATATAaacgtcaaattttgaccacaaatagatattgatg
taagaaaatttctgagttaaaaatcttttgaaaaaaatgatgacgtcatt
tattatagccaaaaatcgaaaattgcttaaaaatgctgacttcatcattt
ttcaggagatttcgaaaattttactTCTAGAGAATTACAATATATTTGTT
CTGTCAAAATTACATATTGATATCATTAATAGTTTATgagttatttaaat
tttaaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATCATAT
GGCGCTTCTTTtcagctatgtttgacattttgaaagtgagtggaactggt
tcacttttaccttggacatgccgtaactcacttgagcagatgttatcatt
ccagccgcggctttcttatacagggtgtccctaattaaagtatcgagttt
gaacatgcgattgagtagaaaagtttgtgtgtgttaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtgtgtg
ttatcgctaaaatataagaacgttctccatcacacaggcttattacaaaa
ggtagttacaacgtataaattaatcgtaatgacaaagaaaaacgagggag
agcttaaaatacaattttgtgaatacacacataaaactttctactcatag
ttgtgtttcgactggatactttaattagggacaccctgtactatGATGAC
ATTTACTTCTGACTGGTTAGataatttattgacactaataaatttatcag
ctgtaagttgtaaagcaagtaacatgggaataaaatcacgtgaacttttt
cgagtaatcatatgttttgactgcattgatataaNctgtaagttgtaaag
caagtaacatgggaataaaatcacgtgaactttttcgagtaatcataTGT
TTTGACtacattgatataatttttgcAGCCCGTTTATTTTGGCGCGCTGT
TAAGGGTTGATGTGCGTGTGTTTCCAGGACTTTGAATTAGATATCTGTGT
ACTCTCCATGAGGTGAGTACCAATTTGTCAACGAGACCTAGTTACATTTG
ATCCACTAATTTCCAACAATTTATTTAGAATGTGGAATCGAAAGAACTGA
AAGAATACGAGATTTGGATCCTCGGTGAAGCAGATAAAAATAATGATGGT
GAACTTTCAAAAGATGAACTTCGAATGTTATTCTTCGGTTAAAAACAAGA
CTCCACGATAAAAAAATATCGTATTTGTATACTGAGAATTAGCTTTTTAT
AGAGTAAATTTATAATGTGTTAttaatttttgtacattttcatATTATTT
CAAACTAAATTTTTGACTCTGATACTTCTGTCAAATATGCTACATTAATT
ACCAACTAGTATAATCAACATGGTACATTATAATATTTCGTTCTTATTTc
tttctttgaagaaaattacTCTTGATTTTAAGATGTTATACAACTCAGAG
AAATTTAAGGACTCGTTATCTTCATTGAACTACAAAGAAGccattgattt
tttctgcaaatattatataattgtttttttgtaaacttctactatattat
atattatatctATATTCTTATAATATTTTGATGATTACATCGAGACATCA
ATAATGCAATAAACATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031040XLOC_031040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048835-exon-scaffold_147-1491911889:240094..240150TCONS_00048835-exon-scaffold_147-1491911889:240094..240150Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:240094..240150TCONS_00048835-exon-scaffold_147-1510915933:240094..240150Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:240094..240150TCONS_00048835-exon-scaffold_147-1575043694:240094..240150Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:240981..241166TCONS_00048835-exon-scaffold_147-1491911889:240981..241166Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:240981..241166TCONS_00048835-exon-scaffold_147-1510915933:240981..241166Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:240981..241166TCONS_00048835-exon-scaffold_147-1575043694:240981..241166Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:245890..245979TCONS_00048835-exon-scaffold_147-1491911889:245890..245979Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:245890..245979TCONS_00048835-exon-scaffold_147-1510915933:245890..245979Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:245890..245979TCONS_00048835-exon-scaffold_147-1575043694:245890..245979Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:246903..246959TCONS_00048835-exon-scaffold_147-1491911889:246903..246959Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:246903..246959TCONS_00048835-exon-scaffold_147-1510915933:246903..246959Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:246903..246959TCONS_00048835-exon-scaffold_147-1575043694:246903..246959Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:247230..247289TCONS_00048835-exon-scaffold_147-1491911889:247230..247289Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:247230..247289TCONS_00048835-exon-scaffold_147-1510915933:247230..247289Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:247230..247289TCONS_00048835-exon-scaffold_147-1575043694:247230..247289Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:247758..247813TCONS_00048835-exon-scaffold_147-1491911889:247758..247813Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:247758..247813TCONS_00048835-exon-scaffold_147-1510915933:247758..247813Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:247758..247813TCONS_00048835-exon-scaffold_147-1575043694:247758..247813Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:248030..248072TCONS_00048835-exon-scaffold_147-1491911889:248030..248072Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:248030..248072TCONS_00048835-exon-scaffold_147-1510915933:248030..248072Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:248030..248072TCONS_00048835-exon-scaffold_147-1575043694:248030..248072Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:249020..249073TCONS_00048835-exon-scaffold_147-1491911889:249020..249073Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:249020..249073TCONS_00048835-exon-scaffold_147-1510915933:249020..249073Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:249020..249073TCONS_00048835-exon-scaffold_147-1575043694:249020..249073Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:250022..250093TCONS_00048835-exon-scaffold_147-1491911889:250022..250093Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:250022..250093TCONS_00048835-exon-scaffold_147-1510915933:250022..250093Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:250022..250093TCONS_00048835-exon-scaffold_147-1575043694:250022..250093Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1491911889:253322..253861TCONS_00048835-exon-scaffold_147-1491911889:253322..253861Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1510915933:253322..253861TCONS_00048835-exon-scaffold_147-1510915933:253322..253861Clytia hemisphaericaexon
TCONS_00048835-exon-scaffold_147-1575043694:253322..253861TCONS_00048835-exon-scaffold_147-1575043694:253322..253861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:240094..253861 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.106301	0	0	0	0	0	0	0	0	0	0.225747	0	0	0	0
Blast
[Close]
BLAST of TCONS_00048835 vs. Swiss-Prot (Human)
Match: SEGN (Secretagogin OS=Homo sapiens GN=SCGN PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.464e-21
Identity = 57/180 (31.67%), Postives = 101/180 (56.11%), Query Frame = 1 
Query:  271 EKDFLDVFRKEYKVDA-VTFMKAFEEADEDGNGQISSSELIKFLKALGVDAKET------EELKEHIIELYDKNHDGKLGLTELSKLLQSDQNVLKAFVEGEDLTEEK---FNEVFAHYDRDNGGTINNSELSGFLKDMKSTQDVNVESKELKEYEIWILGEADKNNDGELSKDELRMLF 780
            +++FL +FR+E  +D+ V FM+ + + D D +G IS++EL  FL+ L +  K+       EE    +++++D+N DG+L L +L+++L   +N L  F      TEE+   F ++FA+YD    G +   E+ GF+KDM      ++   +L ++   +L   D N DG++ K EL +  
Sbjct:   91 DENFLLLFRRENPLDSSVEFMQIWRKYDADSSGFISAAELRNFLRDLFLHHKKAISEAKLEEYTGTMMKIFDRNKDGRLDLNDLARILALQENFLLQFKMDACSTEERKRDFEKIFAYYDVSKTGALEGPEVDGFVKDMMELVQPSISGVDLDKFREILLRHCDVNKDGKIQKSELALCL 270
The following BLAST results are available for this feature:
BLAST of TCONS_00048835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEGN4.464e-2131.67Secretagogin OS=Homo sapiens GN=SCGN PE=2 SV=2[more]
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