TCONS_00048841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048841
Unique NameTCONS_00048841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048841 ID=TCONS_00048841|Name=TCONS_00048841|organism=Clytia hemisphaerica|type=transcript|length=315bp
AATGTGATTTCCGATTCTCGGGTTTTGATGTTCTTGGGAGAAGTTCACGG
ATtaacgtttttcttttctttttattcattcatgcGTGATGAGCGACTTG
TAAAACAACGACACGACGATGAAGACAAATAGAGATGTTTCATCAATGAG
TCACCATATCAACGCACCCCATCACTAGTACTTAGCGTACCACCACCATT
CTTATACAACCATTACATACATACAAACTGTTTGGATGGCTGGGGACAAC
GTGTGTGTTgctcaaaagaagaaattggaCAACAATCTTTTTATTGATTA
ACAATAAtatagacc
Run BLAST on NCBI

transcript from alignment at scaffold_147:255141..255672+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048841 ID=TCONS_00048841|Name=TCONS_00048841|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_147:255141..255672+ (Clytia hemisphaerica)
AATGTGATTTCCGATTCTCGGGTTTTGATGTTCTTGGGAGAAGTTCACGG
ATtaacgtttttcttttctttttattcattcatgcGTGATGAGCGACTTG
TAAAACAACGACACGACGATGAAGACAAATAGAGATGTTTCATCAATGAG
TCACCATATCAACGCACCCCATCACTAGTACTTAGGTAGGCAAAAATCCA
TTCTGGGTATTAATTAAATTTATCTAGGTAGGTTTTCCCTCTTTTACCTA
CCTGAAAATCACGTGTGTCTTTAAACTCTTAAGTGACGTTCAATTTGTCT
GAGCTGACTGAGTAACTTCGTCAACTGGACGCTATATATCATCTGGGTTT
TCGTTTTGTAACGACGCGCTACTATGCCGAATTTTTTGTTCTTTCTATTT
AGCGTACCACCACCATTCTTATACAACCATTACATACATACAAACTGTTT
GGATGGCTGGGGACAACGTGTGTGTTgctcaaaagaagaaattggaCAAC
AATCTTTTTATTGATTAACAATAAtatagacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031041XLOC_031041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048841-exon-scaffold_147-1491911889:255141..255325TCONS_00048841-exon-scaffold_147-1491911889:255141..255325Clytia hemisphaericaexon
TCONS_00048841-exon-scaffold_147-1510915933:255141..255325TCONS_00048841-exon-scaffold_147-1510915933:255141..255325Clytia hemisphaericaexon
TCONS_00048841-exon-scaffold_147-1575043694:255141..255325TCONS_00048841-exon-scaffold_147-1575043694:255141..255325Clytia hemisphaericaexon
TCONS_00048841-exon-scaffold_147-1491911889:255543..255672TCONS_00048841-exon-scaffold_147-1491911889:255543..255672Clytia hemisphaericaexon
TCONS_00048841-exon-scaffold_147-1510915933:255543..255672TCONS_00048841-exon-scaffold_147-1510915933:255543..255672Clytia hemisphaericaexon
TCONS_00048841-exon-scaffold_147-1575043694:255543..255672TCONS_00048841-exon-scaffold_147-1575043694:255543..255672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:255141..255672 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.412454	0	0.370666	0.902502	1.06975	0	0.805503	2.40108	1.92359	5.34315	3.94439	1.21067	3.27191	2.14374	2.66964	3.90909	5.90175	4.15896	2.82195	2.76325	1.64992	1.73482	1.36343	0.485678	1.35491	0.458827	0	1.857	0.978557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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