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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048849 ID=TCONS_00048849|Name=TCONS_00048849|organism=Clytia hemisphaerica|type=transcript|length=561bp
CGTTGCTTGAACAAGAATTGTTATTATTACTCATGGTCAAGTTGGTCAGC
TACTTGTGGAAACGGTGTCAAAAGAACAAGACAACTTCGAAAAACCAGCA
ACAGTTATTACACCGTCAAAGCTGTCAGTGAATGCTCAAAGTACAAAACT
ACTTGTGATAATAATCTAATTGAAACCAAGAATTTGGCTAAATGTCCAGT
CCCATGCAAACACAAGAGCTGTTCGTATTACGGTTGGTCCTCGTGGTCGG
CAACTTGCGGATCAGTCGAAAGATCTCGAAAACGTTATTCTTTAAAAGAT
GTCACAACTTATGTCAAAGAAAGCAAAGATTGTGACAAATATCCAAAATC
ATGTGAATTAtacgacaaacaaacaaagactCTCGCTAAATGCCcaaTCC
GCTGCTTGAACAAGAAGTGTTACTATTACTCATGGTCAAGTTGGTCAGCT
ACTTGTGGAAACGGTGTCAAAAGAACAAGACGTTTCAGATATTCAAGCAA
TTCTTATTACAAGGTCAAAGCTGTCAGTGAATGTGTTAAATACACAACTG
CTTGTGATANN Run BLAST on NCBI transcript from alignment at scaffold_147:150005..151777- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048849 ID=TCONS_00048849|Name=TCONS_00048849|organism=Clytia hemisphaerica|type=transcript|length=1773bp|location=Sequence derived from alignment at scaffold_147:150005..151777- (Clytia hemisphaerica)
CGTTGCTTGAACAAGAATTGTTATTATTACTCATGGTCAAGTTGGTCAGC
TACTTGTGGAAACGGTGTCAAAAGAACAAGACAACTTCGAAAAACCAGCA
ACAGTTATTACACCGTCAAAGCTGTCAGTGAATGCTCAAAGTACAAAACT
ACTTGTGATAATAATCTAATTGAAACCAAGAATTTGGCTAAATGTCCAGG
TAAGAGAAAATTTCAAAGTTCTGATGTTCTTTTGATCCCGGAGGGGGGAG
TGGGTATACGAACCAACGGTATATGCGGCGAAAAAATTGGGATTGGCTTT
TAGAATCGCACCCTTAGAGTTCAGCAAAAGATAGATAGATAGATATGCCC
TCTGATGCATCGGAATGGGTCCTATCCACGATGGAGTAGGAATCACAGCG
CAAGCAGACATTGCAACCCTGCAGATGCGAGCTGTCGAGCCATTGTGTAT
ATCACGACACTCGAACTACACAGGAGAACGGATGTCCTCGCAGGTGTAGA
ACCTCCCAAGTGTCACCAAGTACACAACAATGTCTGGAATATCTACCCAT
ACTCTTGTATCAGAGTTATGGCACCCGATTCCCCTCACATGGCACGCTTT
GATCCGGGTGAAGGAGCATTCACTTGCCAAGTGCTATGGTTCAGCAAAAA
ATCGGTGAAATTCATACCTTTTACAGTCCATCTTCTTTTAGATAAAAAAA
TCAGGATTTCGGGCTAAAAATTAACAATTTTTCCTGTACTTGCTGAATTT
CCACTCTTACAGTGCATTTCTGCTATTTTGAAAAATAAACCTTTAACCGC
CGCACATACTATCCCGGGTCCTGATCTCTGTTTTGCCGAGGCACAAACGA
CCTAGGTCCTGGAGAATGNCGTCGGTCAATTTCCCTGACTGCCAATGCAT
CCCGGGTCCTGATCTCTGTTTTGCCGAGGCACAAACGACCTAGGTCCTGG
AGAATGCAAGAAGGTTTTGAGATAATGAAGGTTTTTCTTTACAGTCCCAT
GCAAACACAAGAGCTGTTCGTATTACGGTTGGTCCTCGTGGTCGGCAACT
TGCGGATCAGTCGAAAGATCTCGAAAACGTTATTCTTTAAAAGATGTCAC
AACTTATGTCAAAGAAAGCAAAGATTGTGACAAATATCCAAAATCATGTG
AATTATACGACAAACAAACAAAGACTCTCGCTAAATGCCCAAGTAAGATT
TTTTTTTAATGTGAAGTTTCTTTGAACTCTTTCGTTGGTCAACGCCAACC
TAAATGACAATGTATTGATAGGATTTAACCTTTCCTTCTTANGCAAAGAC
TCTCGCTAAATGCCCAAGTAAGATTTTTTTTAATGTGAAGTTTCTTTGAA
CTCTTTCGTTGGTCAACGCCAACCTAAATGACAATGTATTGATAGGATTT
AACCTTTCCTTCTTATATAAAGAACAATGAATGAAAAACTCGGGAAAAAA
ATTCATCTTAAAAATATTTTTAGGCTCAAAACCGAAAAAGCTAAGAACAT
CCAAGGCTTTTTTGACGTTCTTAGTAAAGACGTTGGAGCATGCACAGCTA
AAATCAAAGTTAAAGCTAAAGTTAAATTACTTCTACTAAACATTTCTACT
ATCCTTTAGTCCGCTGCTTGAACAAGAAGTGTTACTATTACTCATGGTCA
AGTTGGTCAGCTACTTGTGGAAACGGTGTCAAAAGAACAAGACGTTTCAG
ATATTCAAGCAATTCTTATTACAAGGTCAAAGCTGTCAGTGAATGTGTTA
AATACACAACTGCTTGTGATANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048849-exon-scaffold_147-1575043694:151579..151777 | TCONS_00048849-exon-scaffold_147-1575043694:151579..151777 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1575043694:150586..150783 | TCONS_00048849-exon-scaffold_147-1575043694:150586..150783 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1575043694:150005..150168 | TCONS_00048849-exon-scaffold_147-1575043694:150005..150168 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1510915933:151579..151777 | TCONS_00048849-exon-scaffold_147-1510915933:151579..151777 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1510915933:150586..150783 | TCONS_00048849-exon-scaffold_147-1510915933:150586..150783 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1510915933:150005..150168 | TCONS_00048849-exon-scaffold_147-1510915933:150005..150168 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1491911889:151579..151777 | TCONS_00048849-exon-scaffold_147-1491911889:151579..151777 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1491911889:150586..150783 | TCONS_00048849-exon-scaffold_147-1491911889:150586..150783 | Clytia hemisphaerica | exon |
| TCONS_00048849-exon-scaffold_147-1491911889:150005..150168 | TCONS_00048849-exon-scaffold_147-1491911889:150005..150168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:150005..151777 - |
Blast
The following BLAST results are available for this feature:
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