|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048857 ID=TCONS_00048857|Name=TCONS_00048857|organism=Clytia hemisphaerica|type=transcript|length=2194bp
TTTTATATCTGGTAGGTTGGCTCTTTTCCAAAGGTAAATTGTccgttttg
atgtttttagtcGAGAAGGATGGCACAATGTGTCTGCAAGAGGGATGCTT
GTATGATCGCTTATGCCCGGGGTATCAACAATGTGTGTTAAGAAGTATTG
ATATCCAGTTATAGTGTGTGTCTCCCAGTCAATGTCCGGAAAGTTGAAAT
CACCTCCAATCCAGAggattagactggtcgaaattgatggacaaatgatt
gacaggtatgaaaactccgTCTCTCGTCTTtctcagaaatgagaaactaa
gtctcagaaaatagaaaaaacaggTAAAGCgaaagataggaaagggaaaa
tgggTCGTCATTTAGTGAAATGTAAAAACAGGTCTATTATTGGGAGTGTG
TCTCAAGCAGTCCAAAATCTATTTCCTTCAAAGGAGAAGGGAACACTATA
TCATCATCTATGTTTGGAAGGTGTTAGAAGGGATATAGTACCTAACGTTA
AAATCCCCAGCTCGGCCGGCTGTGCCAACTGTCACACAACTGTCCACCTC
CAAGAATCAAACATATCCAGCCAAGCTTTGCacgaccctgccggtgcacc
cgacagtcgggtgctgttgTCGGGTGTTCGAAGTTAGAAATTTcaacacc
cgacagtcgggtgcactTTGTCGGGTGCTACATCTTGGGCGCTCTTAACA
ACACCCGACATGTAACGGGCGGGTGGCGATTTCCCGAGGGCGGAAAAACG
GGTTCTTTTTGCTACCGCCCGACGCCCGGCCTGTAGTTGGGTGCGCGGCA
TTTTTGACGAAATACTCTAATTACTCTCTCAAGGCCAGTCTCCACTTCtc
cgcgcgctgcgatcgcatattttttggcttcaatccttttggcttggaaa
aaagattacgtcataaaaatgtaacgcgcactcgaaaaagtgcgatcgag
aAACGCATGCAAAAGTGCAGACCGGCCTTTCTCGTCAAACCAATTCTTTG
GTGGGTCAAACAATGTGAGTTCGGGCTTTGATGTTCTTGGGAGAAGTTAA
CGGATTAAcgcttttcttttctttttatttatggGTGATAAACGACGGTA
AAACGACGAAACGacgaagacaaataatagagaTGTTTCATCAATGATTC
TTTATCAACGCAAACTTCACTAAGTGTACCACCACCATTCTTGTACAAGT
AACCATTGCGTACATACACAATGTTTGGATGGCTGGGGACAACGTGCGTG
TTGCTCAAAAGAAGAGACTGGAACAACCTTTTTTTATTGATTAACAATAA
TTTAGACCATGCTCAAACCAGTTCAGACGTTACAGTTTCATGTCATATCG
TCCCGGTATAGTTTCCGTTAGGGATagagagtgttcatattggtttcgaa
ACGTtccggagcagttccgttccgttccgatgaaaatagtggaacaaaac
cgtttcgatctgttttgctttgtatgTAACGTCTTCAAATTTTGGTGTTC
ACACGTTCACACAGAACCGTTTCTTTTTGGAACaatacggaaccgtaacg
tctgaacgtGGTCTTacaaacaatctttgaaatacatacaattaaaaata
tgtaaaattataAATCATAAGGCCATTTGATCATCAATAGATCCAACAAT
GCATTTCCTCTGTTTTCTTCCTGAGAAGGAGATAGAAAGTAGAAAGATTA
ACTAATAAACTACCGCCCTCTATTTTAAATCTCTTGTCTATCCACAGCTT
TAGTAtccattatgtctgagattatAAAATCCCggtaaatattcttaaaa
atatcCTTAGATTAaccaatttgaaaaaagtcattccTGTCTCCACGCAC
TTACGTACGTCGTTAGTAAACTTACAACTAGCTTTTAATGCAGAATCACG
TATCTACACAGACCATTTAGAACGCCATAGAAATTACGTCATCATGAAAC
TAAATGTCAGATGAGATTGAGCTATTTATATCATGATATTAAAGGTAATA
TACGTCTTACCTGGATAAACCAACACGTCAGCGTGTTTTGTCATCAGAAT
GTAAGactaaaacgaaaaaagaagagagaaaaagagagcGGAATGTCATG
CCTCAAACCTAAACACGGATGAGAGATAGATTGACCATCAAGTGCAGGCT
CGAATTTAAGAATATCGAAACACTGATATGATCAAAGTACAGAA Run BLAST on NCBI transcript from alignment at scaffold_147:216814..219359- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048857 ID=TCONS_00048857|Name=TCONS_00048857|organism=Clytia hemisphaerica|type=transcript|length=2546bp|location=Sequence derived from alignment at scaffold_147:216814..219359- (Clytia hemisphaerica)
TTTTATATCTGGTAGGTTGGCTCTTTTCCAAAGGTAAATTGTCCGTTTTG
ATGTTTTTAGTCGAGAAGGATGGCACAATGTGTCTGCAAGAGGGATGCTT
GTATGATCGCTTATGCCCGGGGTATCAACAATGTGTGTTAAGAGTGAGTT
ATTGTTTTTCAATAAAATATCTAAGCAATTGTCTCCTCTTGTTGGAAAGT
TCACTAGCTGTGATAAGCCACTTTCTGTGATCCAGTCTAGAGCTATTTTA
TAAATTTCTTTAGAGTATTGATATCCAGTTATAGTGTGTGTCTCCCAGTC
AATGTCCGGAAAGTTGAAATCACCTCCAATCCAGAGGATTAGACTGGTCG
AAATTGATGGACAAATGATTGACAGGTATGAAAACTCCGTCTCTCGTCTT
TCTCAGAAATGAGAAACTAAGTCTCAGAAAATAGAAAAAACAGGTAAAGC
GAAAGATAGGAAAGGGAAAATGGGTCGTCATTTAGTGAAATGTAAAAACA
GGTCTATTATTGGGAGTGTGTCTCAAGCAGTCCAAAATCTATTTCCTTCA
AAGGAGAAGGGAACACTATATCATCATCTATGTTTGGAAGGTGTTAGAAG
GGATATAGTACCTAACGTTAAAATCCCCAGCTCGGCCGGCTGTGCCAACT
GTCACACAACTGTCCACCTCCAAGAATCAAACATATCCAGCCAAGCTTTG
CACGACCCTGCCGGTGCACCCGACAGTCGGGTGCTGTTGTCGGGTGTTCG
AAGTTAGAAATTTCAACACCCGACAGTCGGGTGCACTTTGTCGGGTGCTA
CATCTTGGGCGCTCTTAACAACACCCGACATGTAACGGGCGGGTGGCGAT
TTCCCGAGGGCGGAAAAACGGGTTCTTTTTGCTACCGCCCGACGCCCGGC
CTGTAGTTGGGTGCGCGGCATTTTTGACGAAATACTCTAATTACTCTCTC
AAGGCCAGTCTCCACTTCTCCGCGCGCTGCGATCGCATATTTTTTGGCTT
CAATCCTTTTGGCTTGGAAAAAAGATTACGTCATAAAAATGTAACGCGCA
CTCGAAAAAGTGCGATCGAGAAACGCATGCAAAAGTGCAGACCGGCCTTT
CTCGTCAAACCAATTCTTTGGTGGGTCAAACAATGTGAGTTCGGGCTTTG
ATGTTCTTGGGAGAAGTTAACGGATTAACGCTTTTCTTTTCTTTTTATTT
ATGGGTGATAAACGACGGTAAAACGACGAAACGACGAAGACAAATAATAG
AGATGTTTCATCAATGATTCTTTATCAACGCAAACTTCACTAAGGTAGGC
TTTCAAAGTGCCCAGTAGAAAACTATTCTGCCCTGGGGTATTAAAGTTAT
CTAGGTAGGTTTTTCCACTTTTACCTACCTGAAAATCGTGTTTCTTTAAA
TTTTTAATTAACGTTCAATTTGTCTGAGCTGAGTGAGTAACTTTGTCAAC
TGGACGCTATATATTACCTGGGTTTTCGTTTTGTAACGACACACTATATG
CCGAATTTTTTGTTCAATCTATTTAGTGTACCACCACCATTCTTGTACAA
GTAACCATTGCGTACATACACAATGTTTGGATGGCTGGGGACAACGTGCG
TGTTGCTCAAAAGAAGAGACTGGAACAACCTTTTTTTATTGATTAACAAT
AATTTAGACCATGCTCAAACCAGTTCAGACGTTACAGTTTCATGTCATAT
CGTCCCGGTATAGTTTCCGTTAGGGATAGAGAGTGTTCATATTGGTTTCG
AAACGTTCCGGAGCAGTTCCGTTCCGTTCCGATGAAAATAGTGGAACAAA
ACCGTTTCGATCTGTTTTGCTTTGTATGTAACGTCTTCAAATTTTGGTGT
TCACACGTTCACACAGAACCGTTTCTTTTTGGAACAATACGGAACCGTAA
CGTCTGAACGTGGTCTTACAAACAATCTTTGAAATACATACAATTAAAAA
TATGTAAAATTATAAATCATAAGGCCATTTGATCATCAATAGATCCAACA
ATGCATTTCCTCTGTTTTCTTCCTGAGAAGGAGATAGAAAGTAGAAAGAT
TAACTAATAAACTACCGCCCTCTATTTTAAATCTCTTGTCTATCCACAGC
TTTAGTATCCATTATGTCTGAGATTATAAAATCCCGGTAAATATTCTTAA
AAATATCCTTAGATTAACCAATTTGAAAAAAGTCATTCCTGTCTCCACGC
ACTTACGTACGTCGTTAGTAAACTTACAACTAGCTTTTAATGCAGAATCA
CGTATCTACACAGACCATTTAGAACGCCATAGAAATTACGTCATCATGAA
ACTAAATGTCAGATGAGATTGAGCTATTTATATCATGATATTAAAGGTAA
TATACGTCTTACCTGGATAAACCAACACGTCAGCGTGTTTTGTCATCAGA
ATGTAAGACTAAAACGAAAAAAGAAGAGAGAAAAAGAGAGCGGAATGTCA
TGCCTCAAACCTAAACACGGATGAGAGATAGATTGACCATCAAGTGCAGG
CTCGAATTTAAGAATATCGAAACACTGATATGATCAAAGTACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048857-exon-scaffold_147-1575043694:219217..219359 | TCONS_00048857-exon-scaffold_147-1575043694:219217..219359 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1575043694:218066..219096 | TCONS_00048857-exon-scaffold_147-1575043694:218066..219096 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1575043694:216814..217833 | TCONS_00048857-exon-scaffold_147-1575043694:216814..217833 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1510915933:219217..219359 | TCONS_00048857-exon-scaffold_147-1510915933:219217..219359 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1510915933:218066..219096 | TCONS_00048857-exon-scaffold_147-1510915933:218066..219096 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1510915933:216814..217833 | TCONS_00048857-exon-scaffold_147-1510915933:216814..217833 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1491911889:219217..219359 | TCONS_00048857-exon-scaffold_147-1491911889:219217..219359 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1491911889:218066..219096 | TCONS_00048857-exon-scaffold_147-1491911889:218066..219096 | Clytia hemisphaerica | exon |
| TCONS_00048857-exon-scaffold_147-1491911889:216814..217833 | TCONS_00048857-exon-scaffold_147-1491911889:216814..217833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:216814..219359 - |
Blast
The following BLAST results are available for this feature:
|
