TCONS_00048861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048861
Unique NameTCONS_00048861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048861 ID=TCONS_00048861|Name=TCONS_00048861|organism=Clytia hemisphaerica|type=transcript|length=709bp
GACAACGAGGGACCGATAACAAACACCAAAATGTTCATCACCAGGCTCGG
GAGGTAAAAAGATCTTTCACGGCTATCAGATTTTAACCAAATTTGACCCg
ataataccttaagggaagaaatttaatTTCACGGTTGAGAGAATTTTCTG
TTCAAAATATGgcttattttgccctaaaaataccaattttcgggtaattt
ctttcaatcataaaaatatttgtgtttcgcggatttgccaaaaaacagtt
aaattctgctaaaatttcttcccgccaaaaatttcttcccttaaggtatt
ccaAAATCTCCTATTTATTGCACGTATTGGGCTTAATATTACGGTCGAAT
TTTAATCGATAAGTCATTGCTATCAAGTAAAAGCTGTTGAGTATTGCTTC
AACGGTCGTACTTAGCATAAATCTTCTGATTTCTGCATTGCCTTAAATTG
CCACGGCACTCCTTTCCAATGCGAATCGTAGATTAGAAAGAAATAGAGAA
AGATGTCACATTATAGCGTGCTTGACTATCACCACACAGGAGTATGATTA
CtgtacgtgatttggaaatttcctCTAACAAATCGAGCTTCAGGCCCCAG
TCATCCCTGAGTTGACGATAGGTTTTTATCCCAATTTAAAATCACCGAGG
AACCAAATCGTGGAAAATTCTGTGGTTCACACATTCATCACATTTTTTCA
CGATCGGCT
Run BLAST on NCBI

transcript from alignment at scaffold_147:1228..1936

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048861 ID=TCONS_00048861|Name=TCONS_00048861|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_147:1228..1936 (Clytia hemisphaerica)
AGCCGATCGTGAAAAAATGTGATGAATGTGTGAACCACAGAATTTTCCAC
GATTTGGTTCCTCGGTGATTTTAAATTGGGATAAAAACCTATCGTCAACT
CAGGGATGACTGGGGCCTGAAGCTCGATTTGTTAGaggaaatttccaaat
cacgtacaGTAATCATACTCCTGTGTGGTGATAGTCAAGCACGCTATAAT
GTGACATCTTTCTCTATTTCTTTCTAATCTACGATTCGCATTGGAAAGGA
GTGCCGTGGCAATTTAAGGCAATGCAGAAATCAGAAGATTTATGCTAAGT
ACGACCGTTGAAGCAATACTCAACAGCTTTTACTTGATAGCAATGACTTA
TCGATTAAAATTCGACCGTAATATTAAGCCCAATACGTGCAATAAATAGG
AGATTTtggaataccttaagggaagaaatttttggcgggaagaaatttta
gcagaatttaactgttttttggcaaatccgcgaaacacaaatatttttat
gattgaaagaaattacccgaaaattggtatttttagggcaaaataagcCA
TATTTTGAACAGAAAATTCTCTCAACCGTGAAattaaatttcttccctta
aggtattatcGGGTCAAATTTGGTTAAAATCTGATAGCCGTGAAAGATCT
TTTTACCTCCCGAGCCTGGTGATGAACATTTTGGTGTTTGTTATCGGTCC
CTCGTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031048XLOC_031048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048861-exon-scaffold_147-1491911889:1228..1936TCONS_00048861-exon-scaffold_147-1491911889:1228..1936Clytia hemisphaericaexon
TCONS_00048861-exon-scaffold_147-1510915933:1228..1936TCONS_00048861-exon-scaffold_147-1510915933:1228..1936Clytia hemisphaericaexon
TCONS_00048861-exon-scaffold_147-1575043694:1228..1936TCONS_00048861-exon-scaffold_147-1575043694:1228..1936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:1228..1936 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.290636	0.384634	0.472027	0.1095	0.540341	0.557776	0.546977	0.93965	0.999822	0.580497	1.33704	1.54851	0.964365	0.62386	0	0.0471319	0.053266	0.0545959	0.150855	0.109484	0	0.301163	0.0813562	0.190288	0.478311	1.1918	0	0	0.0787551	0.160478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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