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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048884 ID=TCONS_00048884|Name=TCONS_00048884|organism=Clytia hemisphaerica|type=transcript|length=3992bp
AAACGATTACTTCTTTCGTTTCTTTTGTGGAAAGTGCGGAAAATATGATA
TGCATAAATAGTGAAAGTTTTAAGATAGAAATACATTAACTGCAAGCAAC
GAAGCAACGAAGACCTACAAATAACACGCGTTCAAACAAGACATCATGGC
ACAAGCGATCATTATTGCAATCGTGGTGTTGACAGCCATCATTTTGTTAT
TCTTCAACATTCTCTCCCTTCTTGTGCTCCTCTTCACGCCAAAACTACGT
CATCGCCTCTCCAACCTACCCGTCATCAGCTTCCTGATTGGTTCCTTGCT
ACAAGGTGGTCTACCGGCTCCACTCTACATCTACAAAATCCTGGTGCACC
AATCGGGAAGTGAGCCTGGCTGGTTGTGCGATCTGTATCGTTTCccttac
attttttgcaatcaCATTATGGAGATAAGCATCATGATTCTGGCTTGTGA
ACGTATGTGGGCTATCAGATATCCTTTTACATATTCCAAAGTGTTGACCA
GAAGAACTTTCAACTTCGTTTTGTTATCTGCATGGTTTGTGACAATCTGC
GTCGATGCCATCCCATTTTTCAATGATAATCGTAACGATAATTGTTCATA
TGTGCCAGGCAGATCTTGGGGTTTATCGGTCATCATATTTTACAATATTG
CACCTTTTGTGACTGTCGTTATCAATTATGCTATCATTTGGAAGGTAGCT
TATGGGTTTGCAATGGCTGATCGGAGAAGATCGGAGAGTTTGAGACAATG
CAATCAGGTCACTGTTTCCCTAATTGACGACGAAGGGAACAAGACGCATA
CGTCATCAATGAGAAGTTACCAAAAGTCCATTCAATTTACGTTGGAGATC
AAAGCTACCAAACAGTCCATGGCAATAGCTGctgtctttttgttttgctg
GTTGCCAATGAGTATTCTGTTTATGGCTgatcatttttgtaaaaactgtA
TCTCCGAAAATGAATACTTTGCAAGAAGAGTGGTCAAGATTCTAGCTTTT
TCATCCAGCCTGTTGACACCATTGGTGTATTGTTGGTGGAACAAAGACTT
TCGACATTGTGCAAGGCGAATGTTCAGGTGTAAAGGGAAAGGAGAATTCT
CTGAAGCTTCCCACGAATACAGACTGTAGAAAATATAATCTAGGATATTA
ATTAAATGTATGGCATTATTATTATATGGAAATATTAAGAAGCAATAACT
TTAACACTGTGTAAATATTCACCGTTTATTTTATTATTCGTTATAAAGAG
TNAGCAATAACTTTAACACTGTGTAAATATTCACCGTTTATTTTATTATT
CGTTATAAAGagtataaaatattgtaaaaagcAAGAATTGAAAAGGCATT
TATAATAAAGGTGATGTCCTCCCTCGTGTCCTCCGGACAAAGCAAAGATT
TTGATAGCATCTAAACCTACGATAATCTTCGAAGTTTTATAGACAGCCTG
TCGTAATTCCTTCCTGCAACATTGGGGATTTTTATTAAAATCCCAATGAT
GGGGACTGATAGTCTATTGTTCTCAGTTCAAAGATGTGAATGGATTTGAA
GGGCAATTTTTCATTGAGCTTTAAATCCTAATTAAAACAAAGTTAATTTA
CCAGCTGGGcagaaattgtagggtattttttccaacCGCGGACAAAATCA
TAGTTAAACTttttgtgacacagggatgtatTGTAACAAATACACAGTCA
CAtaggaagaatttttttttagattttggtccaaggagaaaaatattgaa
attaaggAGTTGTTGGAAAATGTAGTGTTTGTGAATATAAATATGATACT
AAATTTACTAATGTTTGATCCTCTCTAATTTCCTAAAACAAAGCAGATAT
AATTATTGCAGACACTCTTCTGtctggtggaactttttcccacagcggga
tacaaaaattatatcaaaatctcaatggggatagaaattctattgttcca
agctttaaaaatccagtgggaatggcttcaaagtgcaattttttaaacat
cgaatttcaaatggggatgtgaaatcaaagtcaatttcctgatggggctg
aaattatagggtatttttcccaccggggatgaAATGTATTTTCATGTGGG
GCTGGGGTCCAAGCGGGTCTGTGAGACAGTGGAGTTTAACTCGAGCATAC
GAACATCATGACAATAGCCCTCAAGGCAAAGGTTGAAAGTTTCGATGGTC
ATTGATACAGGGCGACTAGAGTTTTCAATGTCCAAGAATATTTCTTCCCA
TCGTCGCCATTTTGGTTTAAGAAATACTGAAGTTACTTTCTTCTATTCTG
GTGTCTACCGTATGATGGGTAGCATTACTGGTGTTCCTCTTAGTCCCATT
TTTTCTCACTTTCTTATTGCCCGTTGACAGCAAACAAAATCGTTTGAGGA
AATTACCAGCTGTCGTTCGGTAGTCATTATTCCACCAGCAATAAAACAAT
GGCACCAACAGACTGGAGCTAAAGTTTATCAATTTGATAACCGCtctaat
atttttgtttttatttccttCAGAATAACACCCGTTACAAAAGTGATCCA
AGATGTAAAATGCACTCAATGGTCCCCAGCAAATCAGGTAAACACAGATT
AAAATTAATGAAGTCTTTGTGGCTTTGATTTCAAGATAGAACCTCAAATT
GCTCAATGTTTTTGTGACGTTTGCTTTCATGGCACCATACGAAGTCTTAT
GTTTAACGAAAGCTGTTTCTTCTGAGCACCTATTACTTTCACGAATGGAA
TCTTGTCGTTGACGATCATCACTAGCGAATTTGACGGCTACACACCAAAT
GATGGAATAATTGACCAAGACCATCACAAATGGTAGCATGTTATAAAACA
CAATAACACTCAAACCCCAAAACCGAGTTGGATTGAATAAGCAATCTTCT
TTTACATCCCTGATCCCGTTTAAGAAAGGAACGATATCGACAGCCAACGT
CACTATCCATAACACCAGTATAGCCAGAATCATCGTCTTTCGAACACTTT
TGCTTTCGTAACGAAATGGAAACTTGATTGCAATCATGCGATCTAAACTG
ACCAATAGGATACTCATCTGCATGATATGTCCACAGAAAAGGTACGGGAA
GCGGTATAAATCACATGCCCATCCTGGATAATTATCCGGTGCAGCTAATT
TACGGTACACGTACAATGGTGCTGGTATGAGTCCTTGTAGGGCAGACGCG
ACCAGAAAGCTCATTGTTGGTAAACTCGAATGTCGTTTCCGTAAGGTTGG
GCTGGATGCAATGACGAGAAGAGTCAGGATGTTGAAGGAGGTGAAAAAGA
GAGCAATCAAGATGGTGATACTGTACATCAATATGCTGTCCATCTTTCTT
TACACTTTATTCAGTCTctgaaggaagaaaaaaatgtcattAGAAATATC
TTGTAAACGAGAGAAAATAAGTACAAGTAGTATAGCAAGTTTCGCTCCAa
tattttctcaaagaaaagcAGTTGACGTGATATTTGAGCTCCTTTCCCAA
ATATTCCAAACTGAGTTACTCTCAAAGCAagtttttttgggtcggcaata
taACCTGATATCCAGGTAAATCCGAATACAAGCATATGTAATCGTTCTTA
CCATTCAAAGCAAAGATAAAACTATGTACAGTATGATTAAACTGTTGAAA
TAAAATTCCAAAACAAACGAGAGATGAAGTGTTAAACCCCATCCACTCAA
CCACTCAAACTTTATATCTAACAGCACTATTACAAAAATACCATTTGATA
actgtttataatttttttcgaaaattatcactcctctcttaaaaataaaa
tgcaaaGTCACGTCAGTAATAACGACGTAAGGCCAATTGACTGTTACCAT
GGATAAAAGATCAATgggacaaatatttttctcctCCCATTAATTTGTGT
TTGTCCTCTAATTATTTCCTCGTTGCGATTGGCATTAAATGTACTGAAAG
ACTGAATAATAATGCAGCTATACTGTGTATATAATAAGTTCG Run BLAST on NCBI transcript from alignment at scaffold_148:285044..289265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048884 ID=TCONS_00048884|Name=TCONS_00048884|organism=Clytia hemisphaerica|type=transcript|length=4222bp|location=Sequence derived from alignment at scaffold_148:285044..289265+ (Clytia hemisphaerica)
AAACGATTACTTCTTTCGTTTCTTTTGTGGAAAGTGCGGAAAATATGATA
TGCATAAATAGTGAAAGTTTTAAGGCAAGAAGAATAAGTTAAATCTCGAG
ATCGTCGCATGTGCTCGTATCTAATAAATCTTACAGATTTTAGTTTTAAG
AAGGCTTTTTATTCAAAGGTTTTGTCTGTAGATTAAAAGTGTAGACGAGA
CACAAAACGTTTTAGTAAAGAGGTTTATTGTGGCTTGCTGTATTAGTTTC
TTTCTAGGAGATTTTTGCTGTCACAGCTTTCAAATATTCTCTGTTTTCAT
TCAGATAGAAATACATTAACTGCAAGCAACGAAGCAACGAAGACCTACAA
ATAACACGCGTTCAAACAAGACATCATGGCACAAGCGATCATTATTGCAA
TCGTGGTGTTGACAGCCATCATTTTGTTATTCTTCAACATTCTCTCCCTT
CTTGTGCTCCTCTTCACGCCAAAACTACGTCATCGCCTCTCCAACCTACC
CGTCATCAGCTTCCTGATTGGTTCCTTGCTACAAGGTGGTCTACCGGCTC
CACTCTACATCTACAAAATCCTGGTGCACCAATCGGGAAGTGAGCCTGGC
TGGTTGTGCGATCTGTATCGTTTCccttacattttttgcaatcaCATTAT
GGAGATAAGCATCATGATTCTGGCTTGTGAACGTATGTGGGCTATCAGAT
ATCCTTTTACATATTCCAAAGTGTTGACCAGAAGAACTTTCAACTTCGTT
TTGTTATCTGCATGGTTTGTGACAATCTGCGTCGATGCCATCCCATTTTT
CAATGATAATCGTAACGATAATTGTTCATATGTGCCAGGCAGATCTTGGG
GTTTATCGGTCATCATATTTTACAATATTGCACCTTTTGTGACTGTCGTT
ATCAATTATGCTATCATTTGGAAGGTAGCTTATGGGTTTGCAATGGCTGA
TCGGAGAAGATCGGAGAGTTTGAGACAATGCAATCAGGTCACTGTTTCCC
TAATTGACGACGAAGGGAACAAGACGCATACGTCATCAATGAGAAGTTAC
CAAAAGTCCATTCAATTTACGTTGGAGATCAAAGCTACCAAACAGTCCAT
GGCAATAGCTGctgtctttttgttttgctgGTTGCCAATGAGTATTCTGT
TTATGGCTgatcatttttgtaaaaactgtATCTCCGAAAATGAATACTTT
GCAAGAAGAGTGGTCAAGATTCTAGCTTTTTCATCCAGCCTGTTGACACC
ATTGGTGTATTGTTGGTGGAACAAAGACTTTCGACATTGTGCAAGGCGAA
TGTTCAGGTGTAAAGGGAAAGGAGAATTCTCTGAAGCTTCCCACGAATAC
AGACTGTAGAAAATATAATCTAGGATATTAATTAAATGTATGGCATTATT
ATTATATGGAAATATTAAGAAGCAATAACTTTAACACTGTGTAAATATTC
ACCGTTTATTTTATTATTCGTTATAAAGAGTNAGCAATAACTTTAACACT
GTGTAAATATTCACCGTTTATTTTATTATTCGTTATAAAGagtataaaat
attgtaaaaagcAAGAATTGAAAAGGCATTTATAATAAAGGTGATGTCCT
CCCTCGTGTCCTCCGGACAAAGCAAAGATTTTGATAGCATCTAAACCTAC
GATAATCTTCGAAGTTTTATAGACAGCCTGTCGTAATTCCTTCCTGCAAC
ATTGGGGATTTTTATTAAAATCCCAATGATGGGGACTGATAGTCTATTGT
TCTCAGTTCAAAGATGTGAATGGATTTGAAGGGCAATTTTTCATTGAGCT
TTAAATCCTAATTAAAACAAAGTTAATTTACCAGCTGGGcagaaattgta
gggtattttttccaacCGCGGACAAAATCATAGTTAAACTttttgtgaca
cagggatgtatTGTAACAAATACACAGTCACAtaggaagaattttttttt
agattttggtccaaggagaaaaatattgaaattaaggAGTTGTTGGAAAA
TGTAGTGTTTGTGAATATAAATATGATACTAAATTTACTAATGTTTGATC
CTCTCTAATTTCCTAAAACAAAGCAGATATAATTATTGCAGACACTCTTC
TGtctggtggaactttttcccacagcgggatacaaaaattatatcaaaat
ctcaatggggatagaaattctattgttccaagctttaaaaatccagtggg
aatggcttcaaagtgcaattttttaaacatcgaatttcaaatggggatgt
gaaatcaaagtcaatttcctgatggggctgaaattatagggtatttttcc
caccggggatgaAATGTATTTTCATGTGGGGCTGGGGTCCAAGCGGGTCT
GTGAGACAGTGGAGTTTAACTCGAGCATACGAACATCATGACAATAGCCC
TCAAGGCAAAGGTTGAAAGTTTCGATGGTCATTGATACAGGGCGACTAGA
GTTTTCAATGTCCAAGAATATTTCTTCCCATCGTCGCCATTTTGGTTTAA
GAAATACTGAAGTTACTTTCTTCTATTCTGGTGTCTACCGTATGATGGGT
AGCATTACTGGTGTTCCTCTTAGTCCCATTTTTTCTCACTTTCTTATTGC
CCGTTGACAGCAAACAAAATCGTTTGAGGAAATTACCAGCTGTCGTTCGG
TAGTCATTATTCCACCAGCAATAAAACAATGGCACCAACAGACTGGAGCT
AAAGTTTATCAATTTGATAACCGCtctaatatttttgtttttatttcctt
CAGAATAACACCCGTTACAAAAGTGATCCAAGATGTAAAATGCACTCAAT
GGTCCCCAGCAAATCAGGTAAACACAGATTAAAATTAATGAAGTCTTTGT
GGCTTTGATTTCAAGATAGAACCTCAAATTGCTCAATGTTTTTGTGACGT
TTGCTTTCATGGCACCATACGAAGTCTTATGTTTAACGAAAGCTGTTTCT
TCTGAGCACCTATTACTTTCACGAATGGAATCTTGTCGTTGACGATCATC
ACTAGCGAATTTGACGGCTACACACCAAATGATGGAATAATTGACCAAGA
CCATCACAAATGGTAGCATGTTATAAAACACAATAACACTCAAACCCCAA
AACCGAGTTGGATTGAATAAGCAATCTTCTTTTACATCCCTGATCCCGTT
TAAGAAAGGAACGATATCGACAGCCAACGTCACTATCCATAACACCAGTA
TAGCCAGAATCATCGTCTTTCGAACACTTTTGCTTTCGTAACGAAATGGA
AACTTGATTGCAATCATGCGATCTAAACTGACCAATAGGATACTCATCTG
CATGATATGTCCACAGAAAAGGTACGGGAAGCGGTATAAATCACATGCCC
ATCCTGGATAATTATCCGGTGCAGCTAATTTACGGTACACGTACAATGGT
GCTGGTATGAGTCCTTGTAGGGCAGACGCGACCAGAAAGCTCATTGTTGG
TAAACTCGAATGTCGTTTCCGTAAGGTTGGGCTGGATGCAATGACGAGAA
GAGTCAGGATGTTGAAGGAGGTGAAAAAGAGAGCAATCAAGATGGTGATA
CTGTACATCAATATGCTGTCCATCTTTCTTTACACTTTATTCAGTCTctg
aaggaagaaaaaaatgtcattAGAAATATCTTGTAAACGAGAGAAAATAA
GTACAAGTAGTATAGCAAGTTTCGCTCCAatattttctcaaagaaaagcA
GTTGACGTGATATTTGAGCTCCTTTCCCAAATATTCCAAACTGAGTTACT
CTCAAAGCAagtttttttgggtcggcaatataACCTGATATCCAGGTAAA
TCCGAATACAAGCATATGTAATCGTTCTTACCATTCAAAGCAAAGATAAA
ACTATGTACAGTATGATTAAACTGTTGAAATAAAATTCCAAAACAAACGA
GAGATGAAGTGTTAAACCCCATCCACTCAACCACTCAAACTTTATATCTA
ACAGCACTATTACAAAAATACCATTTGATAactgtttataatttttttcg
aaaattatcactcctctcttaaaaataaaatgcaaaGTCACGTCAGTAAT
AACGACGTAAGGCCAATTGACTGTTACCATGGATAAAAGATCAATgggac
aaatatttttctcctCCCATTAATTTGTGTTTGTCCTCTAATTATTTCCT
CGTTGCGATTGGCATTAAATGTACTGAAAGACTGAATAATAATGCAGCTA
TACTGTGTATATAATAAGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048884-exon-scaffold_148-1491911889:285044..285117 | TCONS_00048884-exon-scaffold_148-1491911889:285044..285117 | Clytia hemisphaerica | exon |
| TCONS_00048884-exon-scaffold_148-1510915933:285044..285117 | TCONS_00048884-exon-scaffold_148-1510915933:285044..285117 | Clytia hemisphaerica | exon |
| TCONS_00048884-exon-scaffold_148-1575043694:285044..285117 | TCONS_00048884-exon-scaffold_148-1575043694:285044..285117 | Clytia hemisphaerica | exon |
| TCONS_00048884-exon-scaffold_148-1491911889:285348..289265 | TCONS_00048884-exon-scaffold_148-1491911889:285348..289265 | Clytia hemisphaerica | exon |
| TCONS_00048884-exon-scaffold_148-1510915933:285348..289265 | TCONS_00048884-exon-scaffold_148-1510915933:285348..289265 | Clytia hemisphaerica | exon |
| TCONS_00048884-exon-scaffold_148-1575043694:285348..289265 | TCONS_00048884-exon-scaffold_148-1575043694:285348..289265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:285044..289265 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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