TCONS_00048937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048937
Unique NameTCONS_00048937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048937 ID=TCONS_00048937|Name=TCONS_00048937|organism=Clytia hemisphaerica|type=transcript|length=459bp
TAAAATAATTGGATTTGGAGCTAAATTGAATACCAGAAAAGTATACATAC
AGGGCCCATGTCGTAATCTAAAAAGTAGTGTGGCCGAAAGTGACAAAAAT
CAAGGCATGgttttatttacaaaataagTGAAGGGGCTTTGAGTTGCCAC
TTGTTCAAGGGTCCTGGTTTCAAGTGCTTTTAAAAAACTTATTATTTATG
TTTATATGtataaaaatctcaaaaataaatatgtacATGTTTTTAAAGCT
TAATAATAATAACGCTTATAATTggaggctcagatttgcagatttcctat
taagcataacatgagcatatacaTCGGTctacaatatttttcaagtggtc
cttttgttttgaaaatttgagcgcTTTTTGGATCAATTGTTTGCAAGATT
TATGTATAAAAACTTGGCATGTACACTGTAAAAACTTGGCATATATAAGC
ATATACCCA
Run BLAST on NCBI

transcript from alignment at scaffold_148:18096..18554

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048937 ID=TCONS_00048937|Name=TCONS_00048937|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at scaffold_148:18096..18554 (Clytia hemisphaerica)
TGGGTATATGCTTATATATGCCAAGTTTTTACAGTGTACATGCCAAGTTT
TTATACATAAATCTTGCAAACAATTGATCCAAAAAgcgctcaaattttca
aaacaaaaggaccacttgaaaaatattgtagACCGAtgtatatgctcatg
ttatgcttaataggaaatctgcaaatctgagcctccAATTATAAGCGTTA
TTATTATTAAGCTTTAAAAACATgtacatatttatttttgagatttttat
aCATATAAACATAAATAATAAGTTTTTTAAAAGCACTTGAAACCAGGACC
CTTGAACAAGTGGCAACTCAAAGCCCCTTCActtattttgtaaataaaac
CATGCCTTGATTTTTGTCACTTTCGGCCACACTACTTTTTAGATTACGAC
ATGGGCCCTGTATGTATACTTTTCTGGTATTCAATTTAGCTCCAAATCCA
ATTATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031085XLOC_031085Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048937-exon-scaffold_148-1491911889:18096..18554TCONS_00048937-exon-scaffold_148-1491911889:18096..18554Clytia hemisphaericaexon
TCONS_00048937-exon-scaffold_148-1510915933:18096..18554TCONS_00048937-exon-scaffold_148-1510915933:18096..18554Clytia hemisphaericaexon
TCONS_00048937-exon-scaffold_148-1575043694:18096..18554TCONS_00048937-exon-scaffold_148-1575043694:18096..18554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:18096..18554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2772	0.691928	0.803394	0	2.2965	1.96595	2.00694	1.02484	0.239171	1.33314	2.3004	1.22865	1.51009	1.86229	1.69222	0.864765	0.958788	1.85626	0.754273	1.26287	2.33253	1.80698	0.488137	0.443787	0.152364	0	2.33506	1.03835	1.10257	1.12335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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