TCONS_00048939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048939
Unique NameTCONS_00048939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048939 ID=TCONS_00048939|Name=TCONS_00048939|organism=Clytia hemisphaerica|type=transcript|length=547bp
AGAAAAATGTAGTTTCTTCAGAAGGCGTGCACAGTGGTGATGCAAAAGCA
TAGATCAGAGAACAGAGCATGGTGTAAACCACACTGTGCATGAATAAAAA
CACTTTCACAACACATACAATGGAGTCAATCATCGGAAGAAAAAAAATTT
AGCAGAACATAACTGTGATTCTTTTCTTTAGTAAAACAGTTATCATCTAA
AGTCTTTTACGCTGTACTTAATTCTCTGGAATGACAgtagatgaaaattt
caccatttaAGGAgagatttgatttttatttataagtaaCCTATTGTAGT
TTAAAATACCAGGCCGATAACGTGGGCTGAGAAAGATACAAAAAATGACA
GCACGATAGCTTGATGAACTTATCTTTCTTTTATGGTTCAAAACAGTCGG
AGATTTCTAATTCATTATAACTAAATCTAAAGCAATGTACAAAACAAATT
CCAATAACGTAATTTTAGGTAAATTTCTGTCTTTTATGGGCCTTAATCAC
TTTCTTGACGGTTAAAAATCTGAAGCGGGGATATGAAAAGTGAAGGA
Run BLAST on NCBI

transcript from alignment at scaffold_148:34624..35170

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048939 ID=TCONS_00048939|Name=TCONS_00048939|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_148:34624..35170 (Clytia hemisphaerica)
TCCTTCACTTTTCATATCCCCGCTTCAGATTTTTAACCGTCAAGAAAGTG
ATTAAGGCCCATAAAAGACAGAAATTTACCTAAAATTACGTTATTGGAAT
TTGTTTTGTACATTGCTTTAGATTTAGTTATAATGAATTAGAAATCTCCG
ACTGTTTTGAACCATAAAAGAAAGATAAGTTCATCAAGCTATCGTGCTGT
CATTTTTTGTATCTTTCTCAGCCCACGTTATCGGCCTGGTATTTTAAACT
ACAATAGGttacttataaataaaaatcaaatctcTCCTtaaatggtgaaa
ttttcatctacTGTCATTCCAGAGAATTAAGTACAGCGTAAAAGACTTTA
GATGATAACTGTTTTACTAAAGAAAAGAATCACAGTTATGTTCTGCTAAA
TTTTTTTTCTTCCGATGATTGACTCCATTGTATGTGTTGTGAAAGTGTTT
TTATTCATGCACAGTGTGGTTTACACCATGCTCTGTTCTCTGATCTATGC
TTTTGCATCACCACTGTGCACGCCTTCTGAAGAAACTACATTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031087XLOC_031087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048939-exon-scaffold_148-1491911889:34624..35170TCONS_00048939-exon-scaffold_148-1491911889:34624..35170Clytia hemisphaericaexon
TCONS_00048939-exon-scaffold_148-1510915933:34624..35170TCONS_00048939-exon-scaffold_148-1510915933:34624..35170Clytia hemisphaericaexon
TCONS_00048939-exon-scaffold_148-1575043694:34624..35170TCONS_00048939-exon-scaffold_148-1575043694:34624..35170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:34624..35170 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.67373	3.37775	4.75381	4.76714	0.283099	0	0	0	0	0	0	0	0.0698081	0	0	0	0	0	0	0	0	0	1.32384	0	0	0.100578	0.287852	0	0.233003	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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