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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048951 ID=TCONS_00048951|Name=TCONS_00048951|organism=Clytia hemisphaerica|type=transcript|length=1206bp
aaataacaaaagaaaattcagacAGATTGgaaacaaaaaagtgaaacatg
atAAATGTATCCACATGAAAATACGCATTGTTTATGATAGATATGATATA
ATATACAAACAATTTTAATCAACAGTACTGTCAATCCAACGCACaagaat
atttttgaatcaAAATGGAAGCTGTGACAGCAGGAAAGATAACGAAAAGA
AGAATGGCTTCATCACAAGAAGCCTTCCAGTATTTACCGTTGAAAGAACA
GTTACAAATACAATCAAATAAAAGACGAaggaaaacagaaaagaaattGC
CACCGCCATTAATCAAAATCGAAAAGGGACAGTCACCGGATTTGCCATTA
CCAAAAAGTCTTCTTTCACCCATCACACCCGTCCGAAAACAACGCCTTCC
ACCCATCAATTCCGTCCAAAAGCAGTGTTCATTAATAAACAGCTCAAACA
GAATTTCGGCAGGAAGTAACCCTATCAAATATGTCGTTCCACAGAAGTAT
AAACTGTCTTTGAAGAATCCACTTCCAGTACCGGAGAAGTACACTGTTAT
TGGGAAAGTATGTTATCCAAGTCGTAAGTTCGACTCATTGGTTGCAAAAG
CCTTGGCTGACATCGAACAGGAACAAAGGTGGAAAGAGATGAAACATTAG
tcagtgatttatttctttagAAGAAAGATAATTCACATTTAATCAAGGGA
AAGTCTACGACTTCATCTTCCAGCCTGCTACGACTATCGAGCTATCTGTA
TAATATCCTCAAAAAAATGAGATAGAGAAAATGGAAAACCCGGGGAGGGC
ACTCAATATTTTAACGACGGCATGTGCAGccaaaaaattggctttcaaaa
tcgtacccttacagtgcagccaTTCAGCAGTAAAAAGCTAACCTTACAGT
ttagtatgatttcatatcttattttgctgaagctgaagccacctgaaaat
gagcctgagatgtcgacacaatgtgaaaacaaatcaaaatgttcTAGTCA
AAACCATAAAGATACCTCAGATTTGTATTGCCAGACTTGCAACTCAGcag
tccccaaacacacccttacagtgtatccagctaaaagaagacccttgcag
tgcattttatcaaaagtaaacccttacagtgcattttgagggtatcgaaa
aacctacccttaagggtgggACATCTCGTGCGTCaaaccatatgagtgcc
ccccNa Run BLAST on NCBI protein sequence of TCONS_00048951-protein >TCONS_00048951-protein ID=TCONS_00048951-protein|Name=TCONS_00048951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MEAVTAGKITKRRMASSQEAFQYLPLKEQLQIQSNKRRRKTEKKLPPPLI
KIEKGQSPDLPLPKSLLSPITPVRKQRLPPINSVQKQCSLINSSNRISAG
SNPIKYVVPQKYKLSLKNPLPVPEKYTVIGKVCYPSRKFDSLVAKALADI
EQEQRWKEMKH Run BLAST on NCBI transcript from alignment at scaffold_148:265407..266612 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048951 ID=TCONS_00048951|Name=TCONS_00048951|organism=Clytia hemisphaerica|type=transcript|length=1206bp|location=Sequence derived from alignment at scaffold_148:265407..266612 (Clytia hemisphaerica)
tNggggggcactcatatggtttGACGCACGAGATGTcccacccttaaggg
taggtttttcgataccctcaaaatgcactgtaagggtttacttttgataa
aatgcactgcaagggtcttcttttagctggatacactgtaagggtgtgtt
tggggactgCTGAGTTGCAAGTCTGGCAATACAAATCTGAGGTATCTTTA
TGGTTTTGACTAgaacattttgatttgttttcacattgtgtcgacatctc
aggctcattttcaggtggcttcagcttcagcaaaataagatatgaaatca
tactaaACTGTAAGGTTAGCTTTTTACTGCTGAAtggctgcactgtaagg
gtacgattttgaaagccaattttttggCTGCACATGCCGTCGTTAAAATA
TTGAGTGCCCTCCCCGGGTTTTCCATTTTCTCTATCTCATTTTTTTGAGG
ATATTATACAGATAGCTCGATAGTCGTAGCAGGCTGGAAGATGAAGTCGT
AGACTTTCCCTTGATTAAATGTGAATTATCTTTCTTctaaagaaataaat
cactgaCTAATGTTTCATCTCTTTCCACCTTTGTTCCTGTTCGATGTCAG
CCAAGGCTTTTGCAACCAATGAGTCGAACTTACGACTTGGATAACATACT
TTCCCAATAACAGTGTACTTCTCCGGTACTGGAAGTGGATTCTTCAAAGA
CAGTTTATACTTCTGTGGAACGACATATTTGATAGGGTTACTTCCTGCCG
AAATTCTGTTTGAGCTGTTTATTAATGAACACTGCTTTTGGACGGAATTG
ATGGGTGGAAGGCGTTGTTTTCGGACGGGTGTGATGGGTGAAAGAAGACT
TTTTGGTAATGGCAAATCCGGTGACTGTCCCTTTTCGATTTTGATTAATG
GCGGTGGCaatttcttttctgttttcctTCGTCTTTTATTTGATTGTATT
TGTAACTGTTCTTTCAACGGTAAATACTGGAAGGCTTCTTGTGATGAAGC
CATTCTTCTTTTCGTTATCTTTCCTGCTGTCACAGCTTCCATTTtgattc
aaaaatattcttGTGCGTTGGATTGACAGTACTGTTGATTAAAATTGTTT
GTATATTATATCATATCTATCATAAACAATGCGTATTTTCATGTGGATAC
ATTTatcatgtttcacttttttgtttcCAATCTgtctgaattttcttttg
ttattt Coding sequence (CDS) from alignment at scaffold_148:265407..266612 >TCONS_00048951 ID=TCONS_00048951|Name=TCONS_00048951|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_148:265407..266612 (Clytia hemisphaerica)
CTAATGTTTCATCTCTTTCCACCTTTGTTCCTGTTCGATGTCAGCCAAGG
CTTTTGCAACCAATGAGTCGAACTTACGACTTGGATAACATACTTTCCCA
ATAACAGTGTACTTCTCCGGTACTGGAAGTGGATTCTTCAAAGACAGTTT
ATACTTCTGTGGAACGACATATTTGATAGGGTTACTTCCTGCCGAAATTC
TGTTTGAGCTGTTTATTAATGAACACTGCTTTTGGACGGAATTGATGGGT
GGAAGGCGTTGTTTTCGGACGGGTGTGATGGGTGAAAGAAGACTTTTTGG
TAATGGCAAATCCGGTGACTGTCCCTTTTCGATTTTGATTAATGGCGGTG
GCaatttcttttctgttttcctTCGTCTTTTATTTGATTGTATTTGTAAC
TGTTCTTTCAACGGTAAATACTGGAAGGCTTCTTGTGATGAAGCCATTCT
TCTTTTCGTTATCTTTCCTGCTGTCACAGCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048951-exon-scaffold_148-1491911889:265407..266612 | TCONS_00048951-exon-scaffold_148-1491911889:265407..266612 | Clytia hemisphaerica | exon |
| TCONS_00048951-exon-scaffold_148-1510915933:265407..266612 | TCONS_00048951-exon-scaffold_148-1510915933:265407..266612 | Clytia hemisphaerica | exon |
| TCONS_00048951-exon-scaffold_148-1575043694:265407..266612 | TCONS_00048951-exon-scaffold_148-1575043694:265407..266612 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:265407..266612 . |
Blast
The following BLAST results are available for this feature:
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