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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048957 ID=TCONS_00048957|Name=TCONS_00048957|organism=Clytia hemisphaerica|type=transcript|length=397bp
ATACCTCGTCCAGATCGTCCTCGATCCAAATCTATCGGTCCCAAGAAGCA
GAAGATGGAGCTCGTACACACAATAATGCTTGGCACATCTTTAAAATCGG
TTCTTCCTTGCATCCACGTTGCTTAGACCAATTTGCACTCATGGTTCGCt
tttttccagaaaatgttGGATCTTGTCTAAGAGAAAGGTTGTCATGCTCA
CCTCTGTTCCCTTGTAATGTCGCAATATATGCACGCGTTGTCCGACGTTG
TTTGCCTCATCCCAAGAATCATCAGGAGAAACTTCAGAAAAGTCATGTCA
CAGCCTGgagaagaaaatttaaaaccatGTCAAGAGCGATATTCGGAGCC
TACCTGTTGCAAGCGCATCATTTGCTGAGAAAAGACTTCGGTTCCAG Run BLAST on NCBI protein sequence of TCONS_00048957-protein >TCONS_00048957-protein ID=TCONS_00048957-protein|Name=TCONS_00048957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
TSSRSSSIQIYRSQEAEDGARTHNNAWHIFKIGSSLHPRCLDQFALMVRF
FPENVGSCLRERLSCSPLFPCNVAIYARVVRRCLPHPKNHQEKLQKSHVT
AWRRKFKTMSRAIFGAYLLQAHHLLRKDFGS Run BLAST on NCBI transcript from alignment at scaffold_149:13368..16886- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048957 ID=TCONS_00048957|Name=TCONS_00048957|organism=Clytia hemisphaerica|type=transcript|length=3519bp|location=Sequence derived from alignment at scaffold_149:13368..16886- (Clytia hemisphaerica)
ATACCTCGTCCAGATCGTCCTCGATCCAAATCTATCGGTCCCAAGAAGCA
GAAGATGGAGCTCGTACACACAATAATGCTTGGCACATCTTTAAAATCGG
TTCTTCCTTGCATCCACGTTGCTTAGACCAATTTGCACTCATGGTTCGCT
TTTTTCCAGAAAATGTTGGATCTTGTCTAAGAGAAAGGTTGGCAAAATTT
ATAACTTCAATCAATGTAAGCTTTATTTCCCTATATTCAATTGTTTGGCG
GTGTCTTTGGAATTTTTGCAATTTTCATGTTTTTCAAAAACCTCAAATTA
ATAATTTATGGCGATTGTTTTTTTCATCATATCAATTTTAGGTTGTCATG
CTCACCTCTGTTCCCTTGTAATGTCGCAATATATGCACGCGTTGTCCGAC
GTTGTTTGCCTCATCCCAAGAATCATCAGGAGAAACTTCAGAAAAGGTAA
TTAAAACAATAATAGTCTAGAAGTATATTGTGTATTATGTAAAACCTTCA
ACTACTCAAAATGGAAACAATAAAGACAAAACTCACAAAACAAAAAGACA
ATATAAACACAACAAAAATCTAGAATGAACATTCACAGAAAATCAATTAG
GTTGGAATTGAAAAGGAAAATATGATGACATAGAAATCCATCAATGCAAA
ACTAGTGATCTGAAGTGACTACAAGGAAGAGAGCGACTCAATATGAGTTA
AGATGGAAAGAAGTAACTCAATATGAGTCAAAAAATATTTCAAGAAAACA
CATTATCTGCTCCTCAGTTTCCGACCTACACAGGATTTCGGCCTTTTACG
AAAATATCCTCCTATATGATGGAAATATGGTTGTGTAGTTAGGCTAAGCA
GTGTTAATTAGACACCACCACAGATAAAAAGATGTAAAAAGATGTGTTTA
GTGAAAGTATAAAACGCGCGCAAATATAAAATAAACTAAAACTTAAAATC
CACGGAACCAGCCGAAGAAACTAAAATAACAATGAGAAAAGAAGTATACT
TTCTACTAGACAAAGTTGCCACACCTTTGACACGTTTCTACCACAATTTT
GTCGAAAGCATACTAGAAGGGAAGGAAGTTTTACCTTGAGAGATAAATGC
ATTGATGGCATGAGTCGTGTTGTTCAAAAATTTCTAGAGCCTTTTTTTGA
TGATGAAGGTTTTTCTTAGGCATTTGTTGATTTTCAAAATAAGTAAAAAA
GAGAGAGCCTTGATAATTCCAAATACATTGTAGTCTTCACCAATTAATAA
TTCAACATCTAACTCTTTGCCACCAACCAAACTTTTGGGATTTTTAGCGA
GTTCGTCGACTTCTGATATAATGTCTTTGAAGCATTCTTTCACACACTCA
TATGACTCACTGGCCATTCCAACTCCAATAGCATTGTTTCCTACATACAT
CGCGCAGAATTGATGTTGCAATTTTTGTCATATAAAAAATGAAGTCGTTG
CATTGTTTTTTGCGCGAGTTCTATTTTCGGCCAATCAAATTGCGTCACGC
ATTCGAAAGATTCGAAAATGTTGCAATCAAAACATTGAATTCATTTGTGA
GTTTGGTTTTGAGAAGAAAACATTTTCTAAAAAATAAACCTAAAGTAAAA
TATTGTGATCTTATTCATATTTTGAAAAGACTTTGAAAACAGAAAGTTAT
AAAATTTATTGCATTGAGATATGGTTGTAAGAGGTATGTATGTATGGAGA
TCGAATGCTTTGTTTGCTTCAGTTTTCACTACAGACTTTCCTCCTTTCGA
AATTCAGTTTTCGATGAGAGCCTTTATTTATCTAAACTTTGTTTTTATTA
ATGGTGATTCATGTTTGGACATAAAAAACTCCCAAGGATAACCAGTAAGT
TTTATTTATTTTGGAGGTAAAAAATGCTAAAGAGAATGAGTAGATATGTG
TCGGTGATTTGTAAAATANNNNNNNNNNNNNNNTGGAAATTGGATTACAA
CCTGTACTTTTTTATATATCATTTTTTAGCATTTTTTATCCTCTTTCACT
TGCGATGGGTGGGAAAATTGTCCAAATATACTTAAGTCTCTGTCATCATT
TTTGTCATTAACGTCAGAATTCATCAGCCTTTATTTTTTTTCGTCAGAGT
GACAGTGCCTATCTTTAGGACAAAAAAGTCGATGGAAATTGTCTTAATCG
ATACATATATTTATACACCGTTGAAAAGAGAAAGGGCTAAACTTTCTCTC
TTGAGGGGTGGGAAATTGAAAGCTACTCAACTTGTATCGTCCCTGCTCTC
TTTAAGTTTGTCAAATTTTCAAAAACATATAAAAAAAGTAACCTTTACAT
TATCGCTTCAAACGTTTTTACAAACTTACAAACCTAAGCAAGTTTGGTAT
TTCTTAAAAGAGGACAGATTCAGTGATTCAAAAATATCAAATTTATGTCT
GAAAACATTATACACAGGAAGTAGTGTAATAAACAAGGGAAAGAAAAAAT
TAAGAAATTTGCAACTTCTAATTTTTTGACGTCAAAAATCTACGTCAAAA
CCCCCGGATTTGTTTGATGTCAAAAACTGTAACGTCAATTCTGCGCGATG
CCGATGGAAATGTAATCTTATCTTCAGATTGTACATTTGTGCATTCAGCT
AATGCACAAATGTACAATTGCGTACAGCCACAATATTTACAAGTTTTCAG
GCCAATTCTTATTATCTCTTTGAATCAGAGGATTGGTTTACTCACCAGAA
CTCTTGTAAAATGAGCCAGATTCCTCAATGATTGAGTAGGACAACACGAC
AAGGTTCGATTTTCGAGTGAGTTAAGTGCCATCACCACTGACTTAAAGCT
GTGGTTGAAAAAAAGTATTGGCTTTAGCAAGTAAATTAACCATTTTTGTC
TCACAGGGTCAAGCCGAAGTGAAGAAAAGAAGGCTTTACATTTTCTCAGA
TAATAAAGGAGAAATTTTTTAAAACTTTTCTCGGAAAACGTGTGTGACTT
TCTTTTCTCAAAANAATTTTTTAAAACTTTTCTCGGAAAACGAGTGCGAC
TTTCTTTTCTCAAAAACAAGTTTCCTTAGAAAAATTAAGGGATATCTTAT
CTGAGGGAAAGAAGGCAAGTTGTTTTCTTATAAAAAAAGAAATATTCTTT
TCTTAAATATCGAAGCAGATTTTCTTTTCTCAGAATAACAGAAGATCCAT
ATAATGAGACTGACCATTATTTTTTTTCAGCTTTTTTCACCCTTAGGTCG
GTTTCTAATTGACCCATCAATCTCATCTGAGCACCAATCGTTTCTCCAGG
AGTCGGCTAAATGTCGAAGCTCCCTGAAATACGTTTTTGTGTCTTCTCCA
CCAAACGCGTTCTTGGGAGCCCAAAAACAATTTGCGATAGCTCGTGTTAT
GCTTTCACAGATACGGTATACCGATCGAGAACGTAAATGACAGCTTTTGC
CCTTTCCATTTCAGTCATGTCACAGCCTGGAGAAGAAAATTTAAAACCAT
GTCAAGAGCGATATTCGGAGCCTACCTGTTGCAAGCGCATCATTTGCTGA
GAAAAGACTTCGGTTCCAG Coding sequence (CDS) from alignment at scaffold_149:13368..16886- >TCONS_00048957 ID=TCONS_00048957|Name=TCONS_00048957|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_149:13368..16886- (Clytia hemisphaerica)
TCATGTCACAGCCTGGAGAAGAAAATTTAAAACCATGTCAAGAGCGATAT
TCGGAGCCTACCTGTTGCAAGCGCATCATTTGCTGAGAAAAGACTTCGGT
TCCGTTGTCATGCTCACCTCTGTTCCCTTGTAATGTCGCAATATATGCAC
GCGTTGTCCGACGTTGTTTGCCTCATCCCAAGAATCATCAGGAGAAACTT
CAGAAAAGACCTCGTCCAGATCGTCCTCGATCCAAATCTATCGGTCCCAA
GAAGCAGAAGATGGAGCTCGTACACACAATAATGCTTGGCACATCTTTAA
AATCGGTTCTTCCTTGCATCCACGTTGCTTAGACCAATTTGCACTCATGG
TTCGCTTTTTTCCAGAAAATGTTGGATCTTGTCTAAGAGAAAGTCATGTC
ACAGCCTGGAGAAGAAAATTTAAAACCATGTCAAGAGCGATATTCGGAGC
CTACCTGTTGCAAGCGCATCATTTGCTGAGAAAAGACTTCGGTTCCGTTG
TCATGCTCACCTCTGTTCCCTTGTAATGTCGCAATATATGCACGCGTTGT
CCGACGTTGTTTGCCTCATCCCAAGAATCATCAGGAGAAACTTCAGAAAA
GACCTCGTCCAGATCGTCCTCGATCCAAATCTATCGGTCCCAAGAAGCAG
AAGATGGAGCTCGTACACACAATAATGCTTGGCACATCTTTAAAATCGGT
TCTTCCTTGCATCCACGTTGCTTAGACCAATTTGCACTCATGGTTCGCTT
TTTTCCAGAAAATGTTGGATCTTGTCTAAGAGAAAGTCATGTCACAGCCT
GGAGAAGAAAATTTAAAACCATGTCAAGAGCGATATTCGGAGCCTACCTG
TTGCAAGCGCATCATTTGCTGAGAAAAGACTTCGGTTCCGTTGTCATGCT
CACCTCTGTTCCCTTGTAATGTCGCAATATATGCACGCGTTGTCCGACGT
TGTTTGCCTCATCCCAAGAATCATCAGGAGAAACTTCAGAAAAGACCTCG
TCCAGATCGTCCTCGATCCAAATCTATCGGTCCCAAGAAGCAGAAGATGG
AGCTCGTACACACAATAATGCTTGGCACATCTTTAAAATCGGTTCTTCCT
TGCATCCACGTTGCTTAGACCAATTTGCACTCATGGTTCGCTTTTTTCCA
GAAAATGTTGGATCTTGTCTAAGAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048957-exon-scaffold_149-1575043694:16700..16886 | TCONS_00048957-exon-scaffold_149-1575043694:16700..16886 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1575043694:16441..16545 | TCONS_00048957-exon-scaffold_149-1575043694:16441..16545 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1575043694:13368..13472 | TCONS_00048957-exon-scaffold_149-1575043694:13368..13472 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1510915933:16700..16886 | TCONS_00048957-exon-scaffold_149-1510915933:16700..16886 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1510915933:16441..16545 | TCONS_00048957-exon-scaffold_149-1510915933:16441..16545 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1510915933:13368..13472 | TCONS_00048957-exon-scaffold_149-1510915933:13368..13472 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1491911889:16700..16886 | TCONS_00048957-exon-scaffold_149-1491911889:16700..16886 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1491911889:16441..16545 | TCONS_00048957-exon-scaffold_149-1491911889:16441..16545 | Clytia hemisphaerica | exon |
| TCONS_00048957-exon-scaffold_149-1491911889:13368..13472 | TCONS_00048957-exon-scaffold_149-1491911889:13368..13472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_149 | supercontig | scaffold_149:13368..16886 - |
Blast
The following BLAST results are available for this feature:
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