TCONS_00048962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048962
Unique NameTCONS_00048962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048962 ID=TCONS_00048962|Name=TCONS_00048962|organism=Clytia hemisphaerica|type=transcript|length=1386bp
TAATGACAAAGGCTTAAAAAACAGaTTTGTTTTCGAAATAATGACATCCC
AATTTGTTGGAAAATGCTTTTGTATGATTACGGGAGCAAGTGCTGGCTTT
GGTCAAGCTTTGGCGCAGTTGATGGTCAAAGAAGGGGGTCTTTTAAGTCA
AGCTGTGAATGGTTCCAAAATTGTTCTTCTCTCTCGAAATGTGTCTGGAA
TGAAACAAACTAGAACTGCAATGGAAGAAAAAGGTTATGATATGAGTCGA
TTCGATGTAGAagttgtttcaattgacttgagtGATACAGGGAATACTGA
GGGTAAAACATTGGAGTATCTTAAAAAGCAATCCAAGGAATATGacaatt
tgattttatttaacaatgCTGGTGTCTTAGGGGATGTTACCTCAACAGCT
GTGGATAAGACCCATCCAATACAAGATTACCAAAATTTGTTCAATGTCAA
TATGGTGTCTCCTGTCTTTCTCATAACAAATGTATGCCAACATTTTTCAA
CCAGTAAACGTACCATTGTTCAAACATCCTCCATTGCTGCAAAACAGGCG
TTAAATTGCATGTCAACTTATTGTTCTGCTAAAGCTGGTATGGACATGTT
TATGAAGTGTTTAACCAAAGATCATCCAGACATTACAACACTTAGTTATT
CACCAGGTCCTATGGACACTGCAATTGGTAATGATTTGAGATTGAATCAC
AAAGTTGAATCTGTACGTGAAAGCTGggaagaaatgaaagaaaaaggcAC
CATTGTCAATCCGTATGATTCAGCTACCAAACTGTTGGAGGTGCTTCAAA
CTGGCTTTAAATCTGGAGATTTTGTTGACGTCTTTGGTCGCACTGGATAA
TTCTTTGTATATATTATACAGTGGACCCTCACTAATTCGAatttctatta
ttcaaatcaaTCTTTAATTCGAAATAATTCTCAGTTTCTGCGTAGGATAA
ACCTTTATAAATTCCTGTTAAAAATCTGTTATCCGAACAGATTGGAATTC
CCGTTCTAacttcgagttcgaattagtgagagttAACTGTTAAATGTCTT
GTCTTGACTTATTAGGGGGAGGATCCATTATATTTACATTTTACTTACAG
TCGTCTTCTTATACATTATTCCTACACAATTGACTTTTGTTGATTACATT
ACTATGAAAAATTATTAATTAGCTTAACTATATATTCAATCAATTTTCCT
TTTGCAGATGTATGATGTATGAATGCACGTCATGAACATTCATAAAATAT
ACGAtgtcaaaatgttgttttgaaaaagtttttcatgaTAACAAGAATAA
TTTGCATATCAGAGTATTACTATTAGGAATTTCAgagatgaaatatattt
tttattctaaaatttttatATCAAATCTAAAACAGA
Run BLAST on NCBI

protein sequence of TCONS_00048962-protein

>TCONS_00048962-protein ID=TCONS_00048962-protein|Name=TCONS_00048962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
NDKGLKNRFVFEIMTSQFVGKCFCMITGASAGFGQALAQLMVKEGGLLSQ
AVNGSKIVLLSRNVSGMKQTRTAMEEKGYDMSRFDVEVVSIDLSDTGNTE
GKTLEYLKKQSKEYDNLILFNNAGVLGDVTSTAVDKTHPIQDYQNLFNVN
MVSPVFLITNVCQHFSTSKRTIVQTSSIAAKQALNCMSTYCSAKAGMDMF
MKCLTKDHPDITTLSYSPGPMDTAIGNDLRLNHKVESVRESWEEMKEKGT
IVNPYDSATKLLEVLQTGFKSGDFVDVFGRTG
Run BLAST on NCBI

transcript from alignment at scaffold_15:10204..21943+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048962 ID=TCONS_00048962|Name=TCONS_00048962|organism=Clytia hemisphaerica|type=transcript|length=11740bp|location=Sequence derived from alignment at scaffold_15:10204..21943+ (Clytia hemisphaerica)
TAATGACAAAGGCTTAAAAAACAGGTAACAGGAAGAATCCAAATGTAAGT
ATGGTGTTGTTAGTTAAATCAGAACAAATTCTCCTAATCATGAAAGTGTT
TGGGGCCATttgccattcaaaaagtacgttcgtcgCCGCGCCGAACGTCG
TCGAGGagagggggggagggggtcagtAAAAAAGCAAACGAAAACAAACA
GGGGGGAGGGGgcagaggtgccaactctcacgcattggacGTGAGACTCA
CGCATTCCAACACTGTCTcacgcaatttttcaaaagtttgatttctcacg
catttttgatccagacggtactaatcgaacgCTTCGATTACGGAAGTAAT
CGAAGAtaatcgaagtaatcgaatgattatttatcgattactgcTTTCGA
TGACAGGTAATCGAACGCATTCGATTACAATAATCGAATGCATTCGATCA
CTGAAATTTCGTAAATTGGGTGAGTATTCGATTACCCGTTCGATTACTTT
TCAATGACCCttcgatgacgttcgataacCCTTTGATGACTTCGATGACC
CTTCGATGACTTCGATGACGTTCGAAAACCCTTCGATGACTTTGATAACG
CttcgatgacgttcgataacCCTTCAATGACTTTGATTATTGAAAATTAT
TCGATTATCTTCGACAGTCagcaaatccttgcatttgcacggggtgtGCA
GTTTTCCCGACCCTGTGCAATGAGCTAGAACGCGTCAGGCAAATACgtca
atttcaactttaaagtgaaaacgggggaaaatgaagatgagcggggcttt
cattttttctttacgaGATTCTTCATTCGTTAATAAAGAATTGTGTCCAT
TGAAAAAAGATTCCacccattcaatcttttttaatcAAGCANNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTAAGTACGGTAATT
TTTCGAAGTACAATCCAATAGTTCCCTTAACAATTAAAAGCGCCAAAGTT
GTAAAATCGTGGCTTTACCCCAGCTATCtgaatttttgcgattttggatT
GTAAGGGAACTACTGTATTGTTGAACTTATAATAGGTAAGTACGATAGTT
TGTTTACTGTGTTTTCGGTGGTTGTACCTGTCAATTTCCATTCTTCTCAG
TCGCTCAGTCTATATACATGCCGATACTAATGTTTTTTGAGCTACCAAGT
TACCTAAAacggaaaaaaaatattgaaaccttATTTTGTGTAGAAGAGAT
ACGGGTAAGAACCCAAAAATAGCTGTTGCGTTAAGTATCGAATTAAAAAG
GAGTTGAAATCATATCACGGCCCTGAAATAGACAAAGATTGTGACTCAAG
TTATAGTCAAAAAcccaagaaaaatgaaagaatcaAGTTGAAAAACTCTA
GAATCAAAACTATGACTATCATCAGGTTCGAGTCGTCGCTCAGGTCAGAA
CGGCAGTCACGTCGCAAAGTAAGAGTAGTGCAAAGGTGCTTCACTAGAGA
ACGTGGAGAAGAGTGCAGGGGTTGATTCTCAGGAAATCTTTATTCTTTAT
CAATTTTCTGTTTAACTTCTGTGTAATTTTTACACCTTCCTTTCAACGCA
AAATTAACGCGGTCAACCAGATCAGATCCCACATTCGCAGAACGGAGCAC
GGGTGTGTGCAGAATGATCCGTTCCCAGcagacacacaacgttgttttaa
cgtccatctaacgttatatggacgttagataaacgttgaaacaacgtgcc
agctgggttattaGAGTACGATTTCGCCCTACCCAGGCTCTCCCGTGTGC
ACAGTACAACGTACGGCCTGGTTCgattaaaattttctgttgAAATAAAC
GAGGGAATAAAGAGATCGAAGCCTTCCATGACTAGTCGAAGTAATCGAAT
GGTAATCGAATGGTAATCGAAGTAATCTAATAAATCTTACAAACCGATAG
TATATCGAATTAATCGAAGagtaatcgaattaatcgaagaGTCATCGAAG
GGTCATCAAACGTTCATCGAACGGTAATCGAAGAAGATGCAGATATTCTG
AGGCTGGTGAGTATTcgattatttcaaaatttcggcGTAATCGATAAGTC
ATCATTCGATGACGTTCGATTAtattcgattattatcgattacaatcgaa
cgttcggaacattcgattagtaccgtctggtttgatatttgaaagaaatt
tccccgattttccgatgATTTTCCGaataaatttccccgattttctgatt
tttgggaaaatttttttcctgattttccgattttcggaataaatttccct
gattttccgattttttggaaaaatttttctgttttcCGAAGTCGTAAAAC
CGGAAAAATTGGGCTAAGATTTTGgattttccttcgaaatttttatctca
tgcCAAATGCAAATGAACATCTTAAGTTGGCAGGTCTGGGGGGTCAATTC
GATCTGTGTACGTTCGCTTTTGCGAGGGGGGGGTGCTTGTCACAAGCGTG
ACTTTTAACTTATAGtctatgaaaaatctttttctatctatctcctaatt
atatacattttttctttgaatcgaTAACCGCAAAGATAATTGTTAATCCC
CTAAACAATTGTGTATGTTATAATTGTTTAGCAATTATTAGATAATTAGA
GAGCAAAAACTTAAGGTGCGATAAGATTAAAGAATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGATAATGAAAGTTACCTTTTCAa
cataatcttacaatagacagagGGTGAAAGTTTAAACAATGCTCAACcgt
caagaaatatttttgctctcagTTTTAACAATTATAATCGAAAAGAACAT
ATTGGCGAACAATATGTTTTGCGCACCATAATGTACGAAACAAAAAACGG
GTGCTCTATTacgagaaagaattttcttttggtaaacaattcccctattG
ATTCAGGTTGAAAAAGAGAGAAAGTACAGAGGCTGAATGCACgtggcttt
cactttcttttaatcTATGTACTATGActgaatttaaattgaaaagagaa
aGGGATCATAGTATAATCAGGAAAATTGCgtaaaatataatttgtataat
cttacataaatgattttttttttaaataaataaagtttcagcgaatgaaa
gtttgtaaattgcctaaatattttatcatgattagcacaattacgcatga
attaatCTATTTTATGCACTTTGGATCATGAATTGTGTATCATAGAttgt
tagatcgtgcatcttaaattacaccaaccagcaaaatggcaatgccccaG
CCATTCTAATTCGCGTCAGCATAGCCGAATGCCGACGCAAATGCCGACGC
AAATGCCGACgtaaatttgactaaaaattgCTGACGTAAAAGTGCTTACT
GTACTATAAAACCCAGAATTTTTTGCTGACGCAAATAAATCTGAATTAGA
AAGGCTGCCCAAAATATGACAAAGCttgattttcccaaaataatttttgg
gcaaatttgggcaaaaatcAGTTGTGCAAAATAGTTTCACTAagtctttt
tctgatttttggtagaaagatagagttctctaaaaagtggctggagtgat
ttttcccgaaaaaaatttaccttgaaatacacattttaatttttttcctg
atATGTATCTCATGTTATCTCATGATTGGAAGCTGCTATGAATCAGTCAC
CTGATTTACTGGTATTTTACAAACCAGAATCTATTATTTACTCACTTACT
TCTTCTGACTAGCTCGTGTTTGCAGATGCCAACATTGAGGGGTTAGGTTT
CTTTTTTTCAAGACCTATGTAGAACTCGTCTGCTGACCGACCATCAAGCA
CGTGATCTTTGAGTGTTTTGATTGGTCGGCCTCTTTTCTTGTTACCGTTG
TTGTTGAAAAACAGTCTTTTGACAATGCTGGTGTTCTTTTGTCTTGCAAT
ATGGCCAAGAAAATTTTGCTGCTGTCATTTGACATATTGAAGGATGTCTT
CAGTTATGCAAACGCGTAGAACATCTTCACTTGACATGACAAAGTGGAAA
GTTTGTTCATTGTTTTCATTGATTCTTCTTTCAAAGCTGCCTATCACCAT
CTCATGAAGTATATTAACGTAGGTGTATCGGATTATTAAAGGGTTTTGTT
TAATGCTTGATAGCTAAATCAACCTCCCAgcctttttaaataatatgaca
AATTTGGGAAGTGCTATgaacttgttttatttttcagtctgtttcttatt
attattgtaatttttcatattttcttattaaatcaatcttcaggtaggtc
cattcagcatgtagcttgttctatttgcttttttaaaatttttaaggttA
TGTTTAATGTCAGTAATGCTGATTGCTGACTTGAAATATGAGGACTATTT
GGTTTGTTTGCATTTCTTGTAggtaaaaaaatgttatttggAGGAAAAGT
GCTCTGTTTTGTGACAGGTGCTAGTAGTGGATTTGGTCGCTCAATATCTA
GGTTGCTTCTTTGTCAGAATGGTCTGCTATCAAAAGCTCAAGTGGGCTCT
CAAATTATCCTGATGTCAAGAAATCTTGATCAATTGAAGGAGACTCAGAG
GTTAATGGAAGATGGATCTACAAACAGTGAACATTTTttaatccaatgtg
aaaagctGGATCTTAGCGATACAAATGCTgttgaaattaaatttcctgAT
CTGCTTATGTCTTTAACAGGAGAATTTGATCATGTCTTATTTTTCAATAA
TGCTGGTTCAATTGCTGATGTTTCTAAACCTATCTTAGACTATCAATGGA
GTATACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTTCCATT
TACATGATTAATGCCNTAAACCTATCTTAGACTATCAATGGAGTATACAG
GATTACACAAAATATTTCAACCTATCAATTATTTCTTCCATTTACATGAT
TAATGCCATGATTCATAAATTTTCTCTCCATCCCTCAAAAATTGTAATTA
TCCAAACATCAAGTCTTGCAGCTGTTCAAGAAATGGCGTATATGCCATTA
TATTGTGCTGCAAAAACATCAATGGATATGTTCATAAAATGTGTTACCAA
GGATCATCCCAACATTAAAACATTGAATTATGCTCCAGGACCTCTAGATA
CTGCAATGGGACAGGATATGAAAAACAAACATGGCTCAGATGACACGAGA
CAGTTTTTTAATCATTTGTTTGAATCTAGAACCATCATCAACCCTGATGA
TTCAGCTGGGAAACTAATGGGTTTGCTGGAAAAAATGGATTTTGAATCTG
GTGCTCACATAGACTACTATGATGTATAATTTTATTTAGAAGATTAATAA
AAGATTAAAGTTATATTTATATGTCAATAATTCAATTCTTATCATTTACA
TAAAGACTTTTCGAGGGGCACAGCAATATAAGAAGAGTCCTTTCTGGAGG
AGGGActttaagttttttaatttgCTGTGGTATTGTTTATCTGTTTAATT
AATGATCTTCTCCTATAAAGAATAAAGAGAAAATTCCAAAATCTTATTAT
TAGCAATGTTGTtataagaaataagaatttctgtcctaCTAATAATAGTT
TGGGTGGCACTCCACATTGCACTACTCATCATCTGCACTGCCTACTACTC
ACAGTGAATTTCCGATTTTATGGCTCAATAACTTCTACAGAATTTATTGA
TTGAAATTAACAGTCAaacatagcttcagccaggtttctagtCCCCCCCT
AACAAAGTAAGGTCCCCCTAATAATTTAGCTCATCCAAAAAAATGCCTTG
TGCTAGGTCCCCTTACTGTAAACACTTGGGGAAAAAACAAAAACATTGTT
CTCCCGCCCCTGTAGAGAAGTCAATAAAAAATATATGCAGCTACAGTACT
GATAAATGAAAACTCAATTTTACTTGTGTTAATATTTATGTTTACAAATC
TTTTGGTTTTTATATTTGATTTAAAAGTAAGATAAGAGATCTTTTGAAAT
TAGCTGAACAGCCCCCAGAGTCTCAGTCAGATCATCTACGCCCCCCCCCC
CAACAATCTAGGTCCCCCCCAAATATTTTGGTAATTTTAGCCCCCAGGCT
CTTTAAAGGCCAAAATATTTCTTAGCCCCCCAAAAAAATAAGGGGGGGGG
CTGATGCTATGTCAAAACTAGAGAAGCCTTAGCTAGCAGctgaataaaga
ataaatattttactatgaaatattttatcatcAGATTCTACATAATTCTG
ATTTATAAAgctttttgtcaaaatttagaTTTGTTTTCGAAATAATGACA
TCCCAATTTGTTGGAAAATGCTTTTGTATGATTACGGGAGCAAGTGCTGG
CTTTGGTCAAGCTTTGGCGCAGTTGATGGTCAAAGAAGGGGGTCTTTTAA
GTCAAGCTGTGAATGGTTCCAAAATTGTTCTTCTCTCTCGAAATGTGTCT
GGAATGAAACAAACTAGAACTGCAATGGAAGAAAAAGGTTATGATATGAG
TCGATTCGATGTAGAagttgtttcaattgacttgagtGATACAGGGAATA
CTGAGGGTAAAACATTGGAGTATCTTAAAAAGCAATCCAAGGAATATGac
aatttgattttatttaacaatgCTGGTGTCTTAGGGGATGTTACCTCAAC
AGCTGTGGATAAGACCCATCCAATACAAGATTACCAAAATTTGTTCAATG
TCAATATGGTGTCTCCTGTCTTTCTCATAACAAATGTATGCCAACATTTT
TCAACCAGTAAACGTACCATTGTTCAAACATCCTCCATTGCTGCAAAACA
GGCGTTAAATTGCATGTCAACTTATTGTTCTGCTAAAGCTGGTATGGACA
TGTTTATGAAGTGTTTAACCAAAGATCATCCAGACATTACAACACTTAGT
TATTCACCAGGTCCTATGGACACTGCAATTGGTAATGATTTGAGATTGAA
TCACAAAGTTGAATCTGTACGTGAAAGCTGggaagaaatgaaagaaaaag
gcACCATTGTCAATCCGTATGATTCAGCTACCAAACTGTTGGAGGTGCTT
CAAACTGGCTTTAAATCTGGAGATTTTGTTGACGTCTTTGGTCGCACTGG
ATAATTCTTTGTATATATTATACAGTGGACCCTCACTAATTCGAatttct
attattcaaatcaaTCTTTAATTCGAAATAATTCTCAGTTTCTGCGTAGG
ATAAACCTTTATAAATTCCTGTTAAAAATCTGTTATCCGAACAGATTGGA
ATTCCCGTTCTAacttcgagttcgaattagtgagagttAACTGTTAAATG
TCTTGTCTTGACTTATTAGGGGGAGGATCCATTATATTTACATTTTACTT
ACAGTCGTCTTCTTATACATTATTCCTACACAATTGACTTTTGTTGATTA
CATTACTATGAAAAATTATTAATTAGCTTAACTATATATTCAATCAATTT
TCCTTTTGCAGATGTATGATGTATGAATGCACGTCATGAACATTCATAAA
ATATACGAtgtcaaaatgttgttttgaaaaagtttttcatgaTAACAAGA
ATAATTTGCATATCAGAGTATTACTATTAGGAATTTCAgagatgaaatat
attttttattctaaaatttttatATCAAATCTAAAACAGA

Coding sequence (CDS) from alignment at scaffold_15:10204..21943+

>TCONS_00048962 ID=TCONS_00048962|Name=TCONS_00048962|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_15:10204..21943+ (Clytia hemisphaerica)
AATGACAAAGGCTTAAAAAACAGaTTTGTTTTCGAAATAATGACATCCCA
ATTTGTTGGAAAATGCTTTTGTATGATTACGGGAGCAAGTGCTGGCTTTG
GTCAAGCTTTGGCGCAGTTGATGGTCAAAGAAGGGGGTCTTTTAAGTCAA
GCTGTGAATGGTTCCAAAATTGTTCTTCTCTCTCGAAATGTGTCTGGAAT
GAAACAAACTAGAACTGCAATGGAAGAAAAAGGTTATGATATGAGTCGAT
TCGATGTAGAagttgtttcaattgacttgagtGATACAGGGAATACTGAG
GGTAAAACATTGGAGTATCTTAAAAAGCAATCCAAGGAATATGacaattt
gattttatttaacaatgCTGGTGTCTTAGGGGATGTTACCTCAACAGCTG
TGGATAAGACCCATCCAATACAAGATTACCAAAATTTGTTCAATGTCAAT
ATGGTGTCTCCTGTCTTTCTCATAACAAATGTATGCCAACATTTTTCAAC
CAGTAAACGTACCATTGTTCAAACATCCTCCATTGCTGCAAAACAGGCGT
TAAATTGCATGTCAACTTATTGTTCTGCTAAAGCTGGTATGGACATGTTT
ATGAAGTGTTTAACCAAAGATCATCCAGACATTACAACACTTAGTTATTC
ACCAGGTCCTATGGACACTGCAATTGGTAATGATTTGAGATTGAATCACA
AAGTTGAATCTGTACGTGAAAGCTGggaagaaatgaaagaaaaaggcACC
ATTGTCAATCCGTATGATTCAGCTACCAAACTGTTGGAGGTGCTTCAAAC
TGGCTTTAAATCTGGAGATTTTGTTGACGTCTTTGGTCGCACTGGATAAA
ATGACAAAGGCTTAAAAAACAGaTTTGTTTTCGAAATAATGACATCCCAA
TTTGTTGGAAAATGCTTTTGTATGATTACGGGAGCAAGTGCTGGCTTTGG
TCAAGCTTTGGCGCAGTTGATGGTCAAAGAAGGGGGTCTTTTAAGTCAAG
CTGTGAATGGTTCCAAAATTGTTCTTCTCTCTCGAAATGTGTCTGGAATG
AAACAAACTAGAACTGCAATGGAAGAAAAAGGTTATGATATGAGTCGATT
CGATGTAGAagttgtttcaattgacttgagtGATACAGGGAATACTGAGG
GTAAAACATTGGAGTATCTTAAAAAGCAATCCAAGGAATATGacaatttg
attttatttaacaatgCTGGTGTCTTAGGGGATGTTACCTCAACAGCTGT
GGATAAGACCCATCCAATACAAGATTACCAAAATTTGTTCAATGTCAATA
TGGTGTCTCCTGTCTTTCTCATAACAAATGTATGCCAACATTTTTCAACC
AGTAAACGTACCATTGTTCAAACATCCTCCATTGCTGCAAAACAGGCGTT
AAATTGCATGTCAACTTATTGTTCTGCTAAAGCTGGTATGGACATGTTTA
TGAAGTGTTTAACCAAAGATCATCCAGACATTACAACACTTAGTTATTCA
CCAGGTCCTATGGACACTGCAATTGGTAATGATTTGAGATTGAATCACAA
AGTTGAATCTGTACGTGAAAGCTGggaagaaatgaaagaaaaaggcACCA
TTGTCAATCCGTATGATTCAGCTACCAAACTGTTGGAGGTGCTTCAAACT
GGCTTTAAATCTGGAGATTTTGTTGACGTCTTTGGTCGCACTGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031108XLOC_031108Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048962-proteinTCONS_00048962-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048962-exon-scaffold_15-1491911889:10204..10227TCONS_00048962-exon-scaffold_15-1491911889:10204..10227Clytia hemisphaericaexon
TCONS_00048962-exon-scaffold_15-1510915933:10204..10227TCONS_00048962-exon-scaffold_15-1510915933:10204..10227Clytia hemisphaericaexon
TCONS_00048962-exon-scaffold_15-1575043694:10204..10227TCONS_00048962-exon-scaffold_15-1575043694:10204..10227Clytia hemisphaericaexon
TCONS_00048962-exon-scaffold_15-1491911889:20582..21943TCONS_00048962-exon-scaffold_15-1491911889:20582..21943Clytia hemisphaericaexon
TCONS_00048962-exon-scaffold_15-1510915933:20582..21943TCONS_00048962-exon-scaffold_15-1510915933:20582..21943Clytia hemisphaericaexon
TCONS_00048962-exon-scaffold_15-1575043694:20582..21943TCONS_00048962-exon-scaffold_15-1575043694:20582..21943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:10204..21943 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.3087	8.52417	2.86683	2.33729	5.60954	4.5291	3.8753	4.38989	4.7245	3.74405	6.90168	4.71757	4.59073	3.58084	6.62386	7.8615	6.67522	6.70273	2.94788	2.98415	6.67386	5.07482	16.4855	14.9563	4.66023	5.05451	4.58778	4.36689	10.4048	12.2029
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
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BLAST of TCONS_00048962 vs. Swiss-Prot (Human)
Match: SPRE (Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.342e-32
Identity = 91/266 (34.21%), Postives = 138/266 (51.88%), Query Frame = 2 
Query:   56 VGKCFCMITGASAGFGQALAQLMVKEGGLLSQAVNGSKIVLLSRNVSGMKQTRTAMEEKGYDMSRFDVEVVSIDLSDTGNTEGKTLEYLKK--QSKEYDNLILFNNAGVLGDVTSTAVDKTHPIQDYQNLFNVNMVSPVFLITNVCQHFSTSK---RTIVQTSSIAAKQALNCMSTYCSAKAGMDMFMKCLTKDHPDITTLSYSPGPMDTAIGNDLRLNHKVESVRESWEEMKEKGTIVNPYDSATKLLEVLQTG-FKSGDFVDVF 835
            +G+  C++TGAS GFG+ LA L+       S    GS +VL +RN   ++Q      E G + S   V  V  DL      + + L  L++  + K    L+L NNAG LGDV+   VD +   Q   N + +N+ S + L ++V + F  S    RT+V  SS+ A Q     + YC+ KA  DM  + L  + P++  L+Y+PGP+DT +    R       +R+  +E+K KG +V+   SA KLL +L+   FKSG  VD +
Sbjct:    5 LGRAVCLLTGASRGFGRTLAPLLA------SLLSPGSVLVLSARNDEALRQLEA---ELGAERSGLRVVRVPADLGAEAGLQ-QLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQ-VNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFY 259
The following BLAST results are available for this feature:
BLAST of TCONS_00048962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRE3.342e-3234.21Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 ... [more]
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