TCONS_00048972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048972
Unique NameTCONS_00048972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048972 ID=TCONS_00048972|Name=TCONS_00048972|organism=Clytia hemisphaerica|type=transcript|length=1241bp
AGGTACTTCGCCCAGAGAGCACAAAGAATTGTCCAAGGTATCCCCAATTG
ATTGCTGAAATGAAAAGTAATTCTGACGagtatcaaaagaaaattaaaga
gaGCCAAGACTTATTGAAGTATATGAGTTTGCACAGCGGAACTAAAGTCA
CGATGGACAACATGTGGATGATTTATGATAATTTCAAAAGCGGGacaGAA
GAAGGTCTTGAACAACCAAAATGGATTTTGGATAGGTTAGATGAAATGAG
GTCATTAAGTTGGTATCTATTTCGCTTCAAATATCAAGGACAAAAAGACA
CGGCTGATCTTCTGGGTCGTCTGACAGGTGGTAGTCTACTTGGCATTATG
AATGATAATATGAAACTCTGGACATCCGGAACACAAGATGAGAAAAAAGA
TCTTCACAAATTGAACATTTTCTCGGCACACGATTCCACTTTATTATCAT
TGTCAGCAGCCCTTCAAACGGACATCGTTGATGAAATCCCTTTCTCTGCT
TCAATTCTTGTGGAACTTTTCAACTCCAGTGGAAATTATTACGTCAAGAT
GACATATAAACACAAGGATACATTGGCACCATGGAAACTTTCGGATTGTG
ATGAGAAATGTCCCTTAGATGATTTCATCAGCAAAACTAAAAATCGAGTA
CCGGAGGATCGGAACAAAGATTGTCAAACTGAATCTGAATTTTTCTCACA
TAAGCGGTTGACAATGGTTTCAATTGCTTTGCTCTCCTTGAGCATCTTCT
TATTCATAGTTATCATTTTCACATGTATTCGTACGCGTCATAGAAAGAAG
ATGGCTGAAAAAACGGCCGCAAGGTATGGCGAGGATGTGAATCTCATATC
GTAACATGTCCAAATTTCAATGCATTTATTATCTTGTCCTAATGGTATAA
AAATTCTACTCTTACCATTAATGAGGCTCAAAGCAGTACAAATAAATTCC
GCTTTATCTTGATATTTTGAGATATTATTTACTTTATATATCATACAACA
TTTAGTTATATTTATTCAAACAATTAttgtatttttattatttaggtgtt
tttaaaataatttataattaacatttgtaaaatatgtatttttggTAAAG
TTTTTGTAGTGACTTTCTATCCACtttcaatttggaaaaaatagcgaaaa
tctcgaacaaatatttttgttataaccATAACGAATCACAAGACAGATTA
TTTATATTTCAATCTGAAAATAGGAATAGCTGAGAAACCAG
Run BLAST on NCBI

transcript from alignment at scaffold_15:35400..40845+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048972 ID=TCONS_00048972|Name=TCONS_00048972|organism=Clytia hemisphaerica|type=transcript|length=5446bp|location=Sequence derived from alignment at scaffold_15:35400..40845+ (Clytia hemisphaerica)
AGGTACTTCGCCCAGAGAGCACAAAGAATTGTCCAAGGTATCCCCAATTG
ATTGCTGAAATGAAAAGTAATTCTGACGagtatcaaaagaaaattaaaga
gaGCCAAGTGAGTAAAGTAAACTTTTAAAGGGGTAATCAGATGGGCTGAG
ATATTTAACGCAGGCTCATTCATTGAATTTTCCTGAgtaaaatctcaatt
ttttttttgtctaatTATTTTCTAACTAGCCTAGATATTCCGGTTAAAAG
TTACTTTTAGCGAGAAAACAAATAGCAAACTAACATAAGAACCGTGTAGT
AActtgattttaaatattttaaatgaccttatcggcccttattggtgttt
ttttttgtcactAAGCAATCGGAATTAAATTAGGGGGCCGGCGCTAAAtc
agggccggcgttaaaagNGTCACTAAGCAATCGGAATTAAATTAGGGGGG
GCGGCGCTAAATCAGGACCGGCGTTAAAAAGGCTGATAAGCTGTGATAAG
GTATCATATCTCAACTTTGAATGAAGGTTTTACTCAAGAATCTAAATGTT
AATCTCAAactatctgattatccctttaaagaaagaaataacaAGCTCTT
CTCGATCTTGATTCGACTATTTGGCAgagataaaaaaagttttttctatg
GGTTGAAAGATTTAAACATTTGAACCTCCAGTTTGCAGGCACCATTGGGG
GAAGATGGCAAGTGACTGCTAAATATGAAACTTCATATATGATTATATTT
TGCAGGACTTATTGAAGTATATGAGTTTGCACAGCGGAACTAAAGTCACG
ATGGACAACATGTGGATGATTTATGATAATTTCAAAAGCGGGGTAAATTT
CACCTATTTTTTCAAGTCGCTGGTCGTATGCTTTAAAGGGAAcagcaaat
ttttcattttctgattCTTGTTCTGAGTGGTTTTGACTGACGCTATATTA
CCCCGGGAATTGTGACTTTTGATCAACCAAAGGCTCTACTAACCTCTCGG
AACCCCGATATATATACACCTGGGTGTATTAGTCTTCTGAAGCTTGTATA
GAATATTCAGAGTTTAATTTTTACCAAGATGATGGAAGTGGTTGAGTATA
CTAAGCcaccgatttttttttttttacagacaGAAGAAGGTCTTGAACAA
CCAAAATGGATTTTGGATAGGTTAGATGAAATGAGGTCATTAAGTTGGTA
TCTATTTCGCTTCAAATATCAAGGACAAAAAGACACGGCTGATCTTCTGG
GTCGTCTGACAGGTGGTAAGTGAAGCAACAATTGAAAATGTTACTTATCC
CGAAACATAAATACGACCAAAACTTTGGCCCATTCTTTCTCGCCAGTGTT
CCGTTTTAGCAAAGTACGAAAAGAGCCTTTTTCATCCCAAGAATTCAGAA
ATATTCagcaagattttgaaaatctggGCTCATTTGAGATGTTTGAGTCT
ATTTTCCGTCTCGGATGTAAAAAAGGCTTTCTTTAaccaaacttttaaaa
ttacaGGTAGTCTACTTGGCATTATGAATGATAATATGAAACTCTGGACA
TCCGGAACACAAGATGAGAAAAAAGATCTTCACAAATTGAACATTTTCTC
GGCAGTAAGTGATAGCACATCTTTCgggatttttaaatttatttcgtCGC
AATGATTAAACTTTAGTCATTCAGCTTAAAATTGTTTCACAGCCCCGCTC
AAAAATTGGTAAAACTAGATTTTTACGACTACTCCAAAAAAACGAGTTAT
CCCGATTTCATATTTTACCGATTAAGAACTTCGTAAAATCCTTgcaaaat
tcaattttacacTTTTGACACTCAAAAACGGAAAATCAAAGTCTACGAGG
TCTTTTTAACGTATTTTTCTTCCCTAAAGGTACacctaaaatatttcaat
aactTGTCTGCATCAATCTGGTACAAACTGTATAAGTACATGAGGccttg
atggccaaaatgttaagaacaagttaagaacattttaaggctttggggac
tccaaaacacccgatttcttaggaaaacagacaaaataaatatccacaaa
atggtgaaaataagaacatgttaagaacatttttaggcttaaatctcaaa
aagttaaaaacatccgaatTAATCAAACCATGAAAATAGCTCCATAAAAg
tctttcattttcactttttttcttctctaGCACGATTCCACTTTATTATC
ATTGTCAGCAGCCCTTCAAACGGACATCGTTGATGAAATCCCTTTCTCTG
CTTCAATTCTTGTGGAACTTTTCAACTCCAGTGGAAAGTAAGAAGAGATG
TGTTTGTCGCTTAGTTTGTTGCTTTTCCCTAGTTCGAGACACATTCTTGT
GAAGGCcttaaagccattgaccttttacatagttataatgtatgttgatt
cagcagattataataaatagaatcttttgtaatgaataaagaaaaatgtg
gagcaagatttttttcttccttttatttactaatttgaaaggactctttt
attaaaattttgctgacatcagtttcagacgagtcgggtgtatataacac
cttcctttaaatgaaaaaactgttacgattttcgcaaatttaagaAATTA
AGTTAACTTaaaatattaatatttttttgtgtcaTACTTGATTCACAAAA
GTAATATTCTCCCGAagtttaaccctttgagtgccagggtctttttttct
aagtttttttttaaaaatcgctagttcaaactttaagggcttatatctcc
tgatctagaaagaaTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaaaa
ataacgatttctaactcaaactgggcattacaggagggcttcgccctcct
atatagcccatgtcgtatatatacgacatcggcacttaaagggttaaaaa
tttCACGAATTTGCTCCTTCGTGAAAGTTAGTTTCTGCTTAAGTTTTCCC
TATTAAGTAACACACACCATTTGCAGCAAATAATTATGTTTACTTTTCGT
TTTTAGTTATTACGTCAAGATGACATATAAACACAAGGATACATTGGCAC
CATGGAAACTTTCGGATTGTGATGAGAAATGTCCCTTAGATGATTTCATC
AGCAAAACTAAAAATCGAGTACCGGAGGATCGGAACAAAGATTGTCAAAC
TGAATCTGAATTTTTCTCACATAAGCGTAATACTTTCTTCTTTCGTGATT
TGCCGATTTCTTATTCAGACCTAATCCTAATTATATCCCAAAAGAGGGAT
CTCTTATTATTTTAGCATGAGCCTCAATTCGTTCTTATTCTTCAATTGGC
TTattcattgcaatgtcttccacagacccaacagttgattggttgcaagt
gacgtattaactgattttacgtcgcacttacaaccaatcagctattgggt
ccgtgatgtaatgtcagaagacattgtaatggtgcacATCATGAATTATA
TGATCCCGTCTCTCATCTAGGTATGTTCTTAAAGTGTTTCTTATTATTGG
CAATATCATGCTTCCAAGCCATTGACGATTGAGTCATTAAAAGAACATAA
GAATAATAAGgctcaaagtttcaaaaaattaagaacgcctCTTGCTGAGC
TAAGATTTACTGGctcttttgaaaaacttgagTGGCCGTAGCATTAAGGT
AGATCATCCCCAAAATGGTTCTTGATGcatctctgcttgatgctcagcaa
taaAGAGACAGATCAAggggttgggggggggggaagagtggcgccctccc
ctaccttcgggtagacagctagagaaaagggagccttcgggttgcTCTCG
ACTGCGATCGCAAgcttggttcttataaaaaacgtgcgttttcttttctt
tcatttgTAGGGTTGACAATGGTTTCAATTGCTTTGCTCTCCTTGAGCAT
CTTCTTATTCATAGTTATCATTTTCACATGTATTCGTACGCGTCATAGAA
AGAAGATGGCTGAAAAAACGGCCGCAAGGTATGGCGAGGATGTGAATCTC
ATATCGTAACATGTCCAAATTTCAATGCATTTATTATCTTGTCCTAATGG
TATAAAAATTCTACTCTTACCATTAATGAGGCTCAAAGCAGTACAAATAA
ATTCCGCTTTATCTTGATATTTTGAGATATTATTTACTTTATATATCATA
CAACATTTAGTTATATTTATTCAAACAATTAttgtatttttattatttag
gtgtttttaaaataatttataattaacatttgtaaaatatgtatttttgg
TAAAGTTTTTGTAGTGACTTTCTATCCACtttcaatttggaaaaaatagc
gaaaatctcgaacaaatatttttgttataaccATAACGAATCACAAGACA
GATTATTTATATTTCAATCTGAAAATAGGAATAGCTGAGAAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031110XLOC_031110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048972-exon-scaffold_15-1491911889:35400..35506TCONS_00048972-exon-scaffold_15-1491911889:35400..35506Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1510915933:35400..35506TCONS_00048972-exon-scaffold_15-1510915933:35400..35506Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1575043694:35400..35506TCONS_00048972-exon-scaffold_15-1575043694:35400..35506Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1491911889:36155..36241TCONS_00048972-exon-scaffold_15-1491911889:36155..36241Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1510915933:36155..36241TCONS_00048972-exon-scaffold_15-1510915933:36155..36241Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1575043694:36155..36241TCONS_00048972-exon-scaffold_15-1575043694:36155..36241Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1491911889:36529..36664TCONS_00048972-exon-scaffold_15-1491911889:36529..36664Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1510915933:36529..36664TCONS_00048972-exon-scaffold_15-1510915933:36529..36664Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1575043694:36529..36664TCONS_00048972-exon-scaffold_15-1575043694:36529..36664Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1491911889:36906..37003TCONS_00048972-exon-scaffold_15-1491911889:36906..37003Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1510915933:36906..37003TCONS_00048972-exon-scaffold_15-1510915933:36906..37003Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1575043694:36906..37003TCONS_00048972-exon-scaffold_15-1575043694:36906..37003Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1491911889:37580..37686TCONS_00048972-exon-scaffold_15-1491911889:37580..37686Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1510915933:37580..37686TCONS_00048972-exon-scaffold_15-1510915933:37580..37686Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1575043694:37580..37686TCONS_00048972-exon-scaffold_15-1575043694:37580..37686Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1491911889:39456..39625TCONS_00048972-exon-scaffold_15-1491911889:39456..39625Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1510915933:39456..39625TCONS_00048972-exon-scaffold_15-1510915933:39456..39625Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1575043694:39456..39625TCONS_00048972-exon-scaffold_15-1575043694:39456..39625Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1491911889:40310..40845TCONS_00048972-exon-scaffold_15-1491911889:40310..40845Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1510915933:40310..40845TCONS_00048972-exon-scaffold_15-1510915933:40310..40845Clytia hemisphaericaexon
TCONS_00048972-exon-scaffold_15-1575043694:40310..40845TCONS_00048972-exon-scaffold_15-1575043694:40310..40845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:35400..40845 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.2306	20.138	7.00743	5.43654	10.012	9.31838	9.11453	11.6153	6.86228	9.50598	6.53303	7.2516	5.60439	4.02574	4.23897	4.26642	9.71002	7.3398	5.98005	7.41334	4.92008	4.85958	13.3175	4.44838	3.22548	3.25801	4.93773	2.15223	10.3926	10.426
Blast
[Close]
BLAST of TCONS_00048972 vs. Swiss-Prot (Human)
Match: PPAL (Lysosomal acid phosphatase OS=Homo sapiens GN=ACP2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 3.111e-17
Identity = 73/227 (32.16%), Postives = 117/227 (51.54%), Query Frame = 3 
Query:   30 CPRYPQLIAEMKSNSDEYQKKIKESQDLLKYMSLHSG-TKVTMDNMWMIYDNFKSGTEEGLEQPKWI----LDRLDEMRSLSWYLFRFKYQGQKDTADXXXXXXXXXXXXIMNDNMKLWTSGTQDEKKDLHKLNIFXXXXXXXXXXXXXXQTDIVDEIPFSASILVELFNS-SGNYYVKMTYKHKDTLAPWKLS--DCDEKCPLDDFISKTKNRVPEDRNKDCQTES 686
            CPRY QL  E +  + EYQ +   +   L  ++  +G T +T++ +W +YD        GL  P W     + RL  ++  S   FRF + G    A+      G  L  I   N+ L  + +Q     L KL ++SAHD+TL++L  AL     ++ P+++  + EL+   SGN+ V+M ++++   APW LS   C  +CPL DF+  T+  VP+D  ++CQ  S
Sbjct:  159 CPRYEQLQNETR-QTPEYQNESSRNAQFLDMVANETGLTDLTLETVWNVYDTLFCEQTHGLRLPPWASPQTMQRLSRLKDFS---FRFLF-GIYQQAEKARLQGGVLLAQI-RKNLTLMATTSQ-----LPKLLVYSAHDTTLVALQMALDVYNGEQAPYASCHIFELYQEDSGNFSVEMYFRNESDKAPWPLSLPGCPHRCPLQDFLRLTEPVVPKDWQQECQLAS 374
The following BLAST results are available for this feature:
BLAST of TCONS_00048972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPAL3.111e-1732.16Lysosomal acid phosphatase OS=Homo sapiens GN=ACP2... [more]
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