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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048989 ID=TCONS_00048989|Name=TCONS_00048989|organism=Clytia hemisphaerica|type=transcript|length=327bp
AATATAACAATGGAAATAATggctttcaaaaacttttatctcCAGTTTCC
GAGCACTGTGGTCGACGTCGTAAACGAAGAGACATCGGCGATGATGAAAT
CGTTCTTCCCGATGATGGAGAGGATGCTTTTTATTTCTACGATCCCCCAC
AACCAAATGGTACGCTTCCATCTTTCCCGACACCGAACGGTATCACGGAG
CAACAAGCTGATCAAGAATGCGATCAAATATTGCGACAATCAGATATCGG
TAAAGTTTGCTTAAAAATGATCCCTGATCTTGGTATTGATCAATACAAAC
ACAGTTGCAAATTTGACGCAATGGTTA Run BLAST on NCBI transcript from alignment at scaffold_15:291788..293170+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048989 ID=TCONS_00048989|Name=TCONS_00048989|organism=Clytia hemisphaerica|type=transcript|length=1383bp|location=Sequence derived from alignment at scaffold_15:291788..293170+ (Clytia hemisphaerica)
AATATAACAATGGAAATAATggctttcaaaaacttttatctcCAGGTAAG
TTAgactgtaccaaactcttcttcgctgactgaaaagataacgcAAACGC
GAGCGATTATAACGCGAAACGGATTTTCGGTCTGTTACGTGACACAGAAT
CTTGCTAACCGTAACCAATATAACAATGGAAATAATGGCTTCCAAAAACT
TCTCTCTCCAATTAtgttagcctgtaccaaactcttcttcgctgactgaa
aagataacgcAAAGTTCGGTCTATTTACGATTATATCCGAAATGGATTGT
CAGTCTGTTACGTGACACAGAATCTCGCTAACCGTAACAGACCGACACAC
GGCAagttcaaaaaagaaataaaacgtGGTTGCGGGGTGGTACAGGCTAC
AGGTATGTTGAAatgttcaaattcttttttccaCTCTCCTTAAATTTCAT
ATTTATGGTACACCCATGGTACACTATGAAAGGTATTATCATTTGGAAAA
ATAGACTGAAACATTTTACTTTAACTAGACAGGCTAACGAAAATTTAGGT
AATTAGGCTTCATTCTGGTTAAAAATCACTTTCAATCCATGTTTATATAT
AAAGAACCCATGGTGCAAGAAGTGTTTATCTAATTGTATGAACAGAAGAT
TTCGCAGAAAGCATGGAAATTCATATCAGTCCCGCTACGGGCTGTAAAAC
GCAATAAAAGAGGGGAAAATCCCGATTTCTTGTGAAAAAGTCCCGATGAT
TaccgattttcaaaaagttgGCTGCCACCCGCCCGTTGTTCGGCAAAATA
TCCTTTCGTCTTACTTATCATACCCTACTGCCTCTTAAATTAGTCATTTT
ATCATACTTGCTTATGCTATTACTATCTACTTACATAATTTTTGTAATTC
ATGTtataatttgaagccatttttcaaagtttaaaatttaaaaacagtcA
AGCAATATATTTCGGTGGTATCACCATTCTCAAGCTtataaaaatgcaat
ttttcaaattNTCAAGCAATATATTTCGGTGGTATCACCATTCTCAAGCT
tataaaaatgcaatttttttcaaatttcaaatctcaAATTTTGTAATTTA
GTTTCCGAGCACTGTGGTCGACGTCGTAAACGAAGAGACATCGGCGATGA
TGAAATCGTTCTTCCCGATGATGGAGAGGATGCTTTTTATTTCTACGATC
CCCCACAACCAAATGGTACGCTTCCATCTTTCCCGACACCGAACGGTATC
ACGGAGCAACAAGCTGATCAAGAATGCGATCAAATATTGCGACAATCAGA
TATCGGTAAAGTTTGCTTAAAAATGATCCCTGATCTTGGTATTGATCAAT
ACAAACACAGTTGCAAATTTGACGCAATGGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048989-exon-scaffold_15-1491911889:291788..291832 | TCONS_00048989-exon-scaffold_15-1491911889:291788..291832 | Clytia hemisphaerica | exon |
| TCONS_00048989-exon-scaffold_15-1510915933:291788..291832 | TCONS_00048989-exon-scaffold_15-1510915933:291788..291832 | Clytia hemisphaerica | exon |
| TCONS_00048989-exon-scaffold_15-1575043694:291788..291832 | TCONS_00048989-exon-scaffold_15-1575043694:291788..291832 | Clytia hemisphaerica | exon |
| TCONS_00048989-exon-scaffold_15-1491911889:292889..293170 | TCONS_00048989-exon-scaffold_15-1491911889:292889..293170 | Clytia hemisphaerica | exon |
| TCONS_00048989-exon-scaffold_15-1510915933:292889..293170 | TCONS_00048989-exon-scaffold_15-1510915933:292889..293170 | Clytia hemisphaerica | exon |
| TCONS_00048989-exon-scaffold_15-1575043694:292889..293170 | TCONS_00048989-exon-scaffold_15-1575043694:292889..293170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:291788..293170 + |
Blast
The following BLAST results are available for this feature:
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