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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048991 ID=TCONS_00048991|Name=TCONS_00048991|organism=Clytia hemisphaerica|type=transcript|length=1114bp
GTTTTCTGCGATTCAAAACTTATAAAACTAAGTATCTTTGAAAACCGACT
GATTTGGAAAACTAGTCCTGAGTCCTATCTTTGTAGATTGAATATGGATT
AATTACATGTTCGACGAAGATGCTAAAATTATGAGTCGTCAAAAACCACC
acaaaaaaagacgaaaaggTTTTGCATCAGTACAACAGTTAAATGTCAGA
TCACTTTAAAATTACGGATTCATCTGGGATTATAACTAACTTATACAGCT
TTCAAGGgtttattaatcatttttctttcagaTCCCGTGAGTAGCAgtca
aaatgctcaaaacaaaactttttattctCAATCATTTTTCAGATTATACC
ACAATGaacaagtttttctttttgaccATCTTGGCAACTATCATTGTTGA
TCATGTGGTGATTTCCATTGCAGCAGCAGGTAACTCTGTCTATCTAAAAC
GTAATGTTGTAGAAAGAAATCATGATGGAACTGTTGACAAGATAGCTTCA
TTGGTGAATGATATCGACAGCCGAACTATCGAACTAAAGagtGCTGTCCG
TGATCTGAAGCGTCGTGAAATGTTCTTAAGACGTCGTGATAGTTTAATGG
AACGTCGGGAAAGATTTGGTGATAAAAATGTCGAATATTTTGGAGAAACa
ccagaaaaagattttacggaaaatatataatgaataaTTGACAAACATCA
TCACTTCACACAATAGACTTTTGCAGTTCATTATCGTTAAAAGTTACACA
TTATGCCGATGTTTatccaaatttataaaaaaacaacaaattgggCACCA
ACCAAGATTATTATTATGATTCAGTTTGCAGACTTTTGCCTTTGTTCGCA
gatatttgttcatttttttgcaatttaaCATATAAATACTTCTAAATGAA
TGCATGTTTCCTTATAGGAGACCACTTTATATCACTTCTACGACGTTTTC
ATGTCCTTTGTTTATCTGACATTCCGATGGCAGATtagcggccgcccacg
ctaaagctctaaaggagcggatgttgaaaaatttcctgaccttcagagct
ttagcttgtaggatgaaaatttctacatctGGATGCCAGATAAGTCCTTT
GTGGACATGTCATA Run BLAST on NCBI protein sequence of TCONS_00048991-protein >TCONS_00048991-protein ID=TCONS_00048991-protein|Name=TCONS_00048991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MLKTKLFILNHFSDYTTMNKFFFLTILATIIVDHVVISIAAAGNSVYLKR
NVVERNHDGTVDKIASLVNDIDSRTIELKSAVRDLKRREMFLRRRDSLME
RRERFGDKNVEYFGETPEKDFTENI Run BLAST on NCBI transcript from alignment at scaffold_15:313973..315356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048991 ID=TCONS_00048991|Name=TCONS_00048991|organism=Clytia hemisphaerica|type=transcript|length=1384bp|location=Sequence derived from alignment at scaffold_15:313973..315356+ (Clytia hemisphaerica)
GTTTTCTGCGATTCAAAACTTATAAAACTAAGTATCTTTGAAAACCGACT
GATTTGGAAAACTAGTCCTGAGTCCTATCTTTGTAGATTGAATATGGATT
AATTACATGTTCGACGAAGATGCTAAAATTATGAGTCGTCAAAAACCACC
acaaaaaaagacgaaaaggTTTTGCATCAGTACAACAGTTAAATGTCAGA
TCACTTTAAAATTACGGATTCATCTGGGATTATAACTAACTTATACAGCT
TTCAAGGgtttattaatcatttttctttcagaTCCCGTGAGTAGCAgtca
aaatgctcaaaacaaaactttttattctCAATCATTTTTCAGATTATACC
ACAATGaacaagtttttctttttgaccATCTTGGCAACTATCATTGTTGA
TCATGTGGTGATTTCCATTGCAGCAGCAGGTAACTCTGTCTATCTAAAAC
GTAATGTTGTAGAAAGAAATCATGATGGAACTGTTGACAAGATAGCTTCA
TTGGTGAATGATATCGACAGCCGAACTATCGAACTAAAGGTAAAACAGCA
TGCtttgtttaaaatatattttccttTATAGTAAAGGGCTCTTAGGATCC
GTAGCATTTTTTGTGGAACGCAACCGTATGTGATTAGCTCGAAAGAAGAT
aggattttgaaacttttttgacagaGGGCTCACAAATATAAGGCCTGGAA
AAAGTTTTACGGCTAAAAAACGTTGTACAGTATACAAGGAAAACTTAGAA
GATTTTGTAGATCAAACAGATCACCATCCAATAATTATGtctctattttc
ttttttcagagtGCTGTCCGTGATCTGAAGCGTCGTGAAATGTTCTTAAG
ACGTCGTGATAGTTTAATGGAACGTCGGGAAAGATTTGGTGATAAAAATG
TCGAATATTTTGGAGAAACaccagaaaaagattttacggaaaatatataa
tgaataaTTGACAAACATCATCACTTCACACAATAGACTTTTGCAGTTCA
TTATCGTTAAAAGTTACACATTATGCCGATGTTTatccaaatttataaaa
aaacaacaaattgggCACCAACCAAGATTATTATTATGATTCAGTTTGCA
GACTTTTGCCTTTGTTCGCAgatatttgttcatttttttgcaatttaaCA
TATAAATACTTCTAAATGAATGCATGTTTCCTTATAGGAGACCACTTTAT
ATCACTTCTACGACGTTTTCATGTCCTTTGTTTATCTGACATTCCGATGG
CAGATtagcggccgcccacgctaaagctctaaaggagcggatgttgaaaa
atttcctgaccttcagagctttagcttgtaggatgaaaatttctacatct
GGATGCCAGATAAGTCCTTTGTGGACATGTCATA Coding sequence (CDS) from alignment at scaffold_15:313973..315356+ >TCONS_00048991 ID=TCONS_00048991|Name=TCONS_00048991|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_15:313973..315356+ (Clytia hemisphaerica)
atgctcaaaacaaaactttttattctCAATCATTTTTCAGATTATACCAC
AATGaacaagtttttctttttgaccATCTTGGCAACTATCATTGTTGATC
ATGTGGTGATTTCCATTGCAGCAGCAGGTAACTCTGTCTATCTAAAACGT
AATGTTGTAGAAAGAAATCATGATGGAACTGTTGACAAGATAGCTTCATT
GGTGAATGATATCGACAGCCGAACTATCGAACTAAAGagtGCTGTCCGTG
ATCTGAAGCGTCGTGAAATGTTCTTAAGACGTCGTGATAGTTTAATGGAA
CGTCGGGAAAGATTTGGTGATAAAAATGTCGAATATTTTGGAGAAACacc
agaaaaagattttacggaaaatatataaatgctcaaaacaaaacttttta
ttctCAATCATTTTTCAGATTATACCACAATGaacaagtttttctttttg
accATCTTGGCAACTATCATTGTTGATCATGTGGTGATTTCCATTGCAGC
AGCAGGTAACTCTGTCTATCTAAAACGTAATGTTGTAGAAAGAAATCATG
ATGGAACTGTTGACAAGATAGCTTCATTGGTGAATGATATCGACAGCCGA
ACTATCGAACTAAAGagtGCTGTCCGTGATCTGAAGCGTCGTGAAATGTT
CTTAAGACGTCGTGATAGTTTAATGGAACGTCGGGAAAGATTTGGTGATA
AAAATGTCGAATATTTTGGAGAAACaccagaaaaagattttacggaaaat
atataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048991-exon-scaffold_15-1491911889:313973..314511 | TCONS_00048991-exon-scaffold_15-1491911889:313973..314511 | Clytia hemisphaerica | exon |
| TCONS_00048991-exon-scaffold_15-1510915933:313973..314511 | TCONS_00048991-exon-scaffold_15-1510915933:313973..314511 | Clytia hemisphaerica | exon |
| TCONS_00048991-exon-scaffold_15-1575043694:313973..314511 | TCONS_00048991-exon-scaffold_15-1575043694:313973..314511 | Clytia hemisphaerica | exon |
| TCONS_00048991-exon-scaffold_15-1491911889:314782..315356 | TCONS_00048991-exon-scaffold_15-1491911889:314782..315356 | Clytia hemisphaerica | exon |
| TCONS_00048991-exon-scaffold_15-1510915933:314782..315356 | TCONS_00048991-exon-scaffold_15-1510915933:314782..315356 | Clytia hemisphaerica | exon |
| TCONS_00048991-exon-scaffold_15-1575043694:314782..315356 | TCONS_00048991-exon-scaffold_15-1575043694:314782..315356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:313973..315356 + |
Blast
The following BLAST results are available for this feature:
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