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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049004 ID=TCONS_00049004|Name=TCONS_00049004|organism=Clytia hemisphaerica|type=transcript|length=3446bpRun BLAST on NCBI protein sequence of TCONS_00049004-protein >TCONS_00049004-protein ID=TCONS_00049004-protein|Name=TCONS_00049004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=905bp MTPIPSYDDGDSIQNYEVMEILGQGAFASAYRAFNRKTGQEVAIKKIDKTRun BLAST on NCBI transcript from alignment at scaffold_15:104469..124068- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049004 ID=TCONS_00049004|Name=TCONS_00049004|organism=Clytia hemisphaerica|type=transcript|length=19600bp|location=Sequence derived from alignment at scaffold_15:104469..124068- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_15:104469..124068- >TCONS_00049004 ID=TCONS_00049004|Name=TCONS_00049004|organism=Clytia hemisphaerica|type=CDS|length=48924bp|location=Sequence derived from alignment at scaffold_15:104469..124068- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049004 vs. Swiss-Prot (Human)
Match: PLK4 (Serine/threonine-protein kinase PLK4 OS=Homo sapiens GN=PLK4 PE=1 SV=3) HSP 1 Score: 394.815 bits (1013), Expect = 5.786e-119 Identity = 173/282 (61.35%), Postives = 227/282 (80.50%), Query Frame = 2
Query: 116 GDSIQNYEVMEILGQGAFASAYRAFNRKTGQEVAIKKIDKTKLQRGNMIKRVKNEVEIHCQLKHPSILEMYSFFEDSHYVYLVLELCHNGELQRYLKSSSNGLPEKDARKIILQVVIGLLYLHSHGILHRDLSLGNLLLTKSMDVKIADFGLAAKLNMPSEKHYTMCGTPNYISPEIATRSPHGLESDVWSLGCLLYTLLVGTPPFDTEAVKTTLNKVVLADYVIPEHVSHEARDLIQQLLKKNPNDRITLAGILDHPFMKSTKTKGNYGVGSLDSGVSTLH 961
G+ I++++V +LG+G+FA YRA + TG EVAIK IDK + + M++RV+NEV+IHCQLKHPSILE+Y++FEDS+YVYLVLE+CHNGE+ RYLK+ E +AR + Q++ G+LYLHSHGILHRDL+L NLLLT++M++KIADFGLA +L MP EKHYT+CGTPNYISPEIATRS HGLESDVWSLGC+ YTLL+G PPFDT+ VK TLNKVVLADY +P +S EA+DLI QLL++NP DR++L+ +LDHPFM + + +G+++ + + H
Sbjct: 6 GEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRNSSTKSKDLGTVEDSIDSGH 287 HSP 2 Score: 201.06 bits (510), Expect = 1.172e-52 Identity = 131/392 (33.42%), Postives = 209/392 (53.32%), Query Frame = 2
Query: 1604 PLNSERLRPIRQRTRNAVVSILENESVVLEFLQKKNGEDLVVEVLIISNDGIKVTQFHPNGRQGVRLXXXXXXXXXXXXXXYAFSALPTKLWKKYQYAEKFVRLVKMKTPKVTYYSDRTKFSLMENDP-ADFEAVFYDGSKISLSSNTYKLIDSNGTNIKFNDDESSKVLSTPQLDLFQHAKECHSHCKELENAVGKLNTLNSLDEGRT-AASYFPLIIGRRPSTSTVTSANEKPSKPPEIKGYVRDVKNATXXXXXXXXXXXXXXYDGTLLSDIKQTTPLRGTKMSQPALPSRPKGPVRASSTSSLDRISEEKKTVDGGGSISVKECFMQGVGWASQLKSGEIQIQYNDGSQMKFHPTLLVVHHTNATGETNRYSKTDALPCHVKTKLAQL 2773
PL + RL+PIRQ+T+ AVVSIL++E V +E +++ ++ V EVL IS+DG +T ++PNG +G L PP + + Y+F LP K W+KYQYA +FV+LV+ K+PK+TY++ K LMEN P ADFE FYDG KI + + ++I+ G + + L HA E H C LE+ + S +E +T +A +FP+IIGR+P + TS+ + S PP + + A+ ++ ++ T + P++ + +G ++ S D S K + +K F++ VGWA+QL SG + +Q+NDGSQ+ + + +T+ G+T RY + + LP ++K KL L
Sbjct: 593 PLVAHRLKPIRQKTKKAVVSILDSEEVCVELVKEYASQEYVKEVLQISSDGNTITIYYPNGGRGFPL-ADRPPSPTDNISRYSFDNLPEKYWRKYQYASRFVQLVRSKSPKITYFTRYAKCILMENSPGADFEVWFYDGVKIHKTEDFIQVIEKTGKSYTLKSESEVNSLKEEIKMYMDHANEGHRICLALESII-------SEEERKTRSAPFFPIIIGRKPGS---TSSPKALSPPPSVDSNYPTRERAS--------------FNRMVMHSAASPT---QAPILNPSMVTN-EGLGLTTTASGTDISSNSLKDCLPKSAQLLKSVFVKNVGWATQLTSGAVWVQFNDGSQLVVQAGVSSISYTSPNGQTTRYGENEKLPDYIKQKLQCL 955 The following BLAST results are available for this feature:
BLAST of TCONS_00049004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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