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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049223 ID=TCONS_00049223|Name=TCONS_00049223|organism=Clytia hemisphaerica|type=transcript|length=893bp
ttccaATTAGAAGAGTTCAATGTATCTTTCTTGTTTTTCAGGACAAAATG
TACGGTAAACCGTCTAACCATCAAACGCTCAGACAATTGAGTAACGAACA
TTGTGTTCAAGATGTGGAAGAAGCGCAGCCGACGGCCGAATGGACAGTTC
ATCCCGCCAATATGAAATTCCGGACAAAGGATGAAGGTCTAAATCACGGA
CATTTGAAAGGAGAGGGTAATGCGCAATACCCTCAATTTGCGGTTACAAA
TCCGACACCCAACACGTTGTTTATGGCGTCCGTATGCATGCTAGTCACTG
ACGAAGACGGTCATTATATTCATCCACATGCTGTGGTTGACAAGAAAACT
AAAACAGAAGTTGGCGCCCGGTGCTTTTGTGTTCCGCCTCATTCTACCAC
CACCGTGgaTATTAAAGATCTTGCCATTCGtcgaattttacaaaaatact
ttCGCTACTTTATCAAGAAACTCACGGACGAGAACGACAACCTTTACACT
GCAGAAGATATTTATCAAGTTTATGATTTCAAACATTCGATCGAAAGTCA
ACTCGATTTAGACAATTTACCAAAGGAAGCTCACAAGGGATATAAACAAG
GCGGGAAACAAGGCAAAGAGAACAAAAGTGAGTTTCACCGATTTGTGTAA
TTGAAATATCTGGGTGTTCCTAACAATTTTCTGGTATATATATGATTATC
CTCCACCTCTAGGCAAAACGCactgtcgaatatttttagatatccgatag
caaaatatctcctctgtagcagcgagcataaagaaaatagtttattgatc
aaataattatttaaatgtcACATATATAAAAACAGATAAACAGAAAGGTC
TTTTTAACAAAAGGGAaaggaaattcgaacgttttgtaattaa Run BLAST on NCBI protein sequence of TCONS_00049223-protein >TCONS_00049223-protein ID=TCONS_00049223-protein|Name=TCONS_00049223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
PIRRVQCIFLVFQDKMYGKPSNHQTLRQLSNEHCVQDVEEAQPTAEWTVH
PANMKFRTKDEGLNHGHLKGEGNAQYPQFAVTNPTPNTLFMASVCMLVTD
EDGHYIHPHAVVDKKTKTEVGARCFCVPPHSTTTVDIKDLAIRRILQKYF
RYFIKKLTDENDNLYTAEDIYQVYDFKHSIESQLDLDNLPKEAHKGYKQG
GKQGKENKSEFHRFV Run BLAST on NCBI transcript from alignment at scaffold_154:447013..451057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049223 ID=TCONS_00049223|Name=TCONS_00049223|organism=Clytia hemisphaerica|type=transcript|length=4045bp|location=Sequence derived from alignment at scaffold_154:447013..451057+ (Clytia hemisphaerica)
ttccaATTAGAAGAGTTCAATGTATCTTTCTTGTTTTTCAGGACAAAATG
TACGGTAAACCGTCTAACCATCAAACGCTCAGACAATTGAGTAACGAACA
TTGTGTTCAAGATGTGGAAGAAGCGCAGCCGACGGCCGAATGGACAGTTC
ATCCCGCCAATGTAAAGTATTAATTCATGAAATTCATTATTTACGTATAC
TTTAAATggaataaattttcgcggggatttgaTTTCACGGATGGATATCA
AAgattccaaaatggtacttgatgcttcTCTTCTTCGGGTtgtagctatc
gaaagaggagccttcgggtttcttccgactgcggtcgcagattTACTTAC
TAAATGATGTCCTTCAAGAGGGGTTTTAATTGAGTTCTAAAATTTGCAAC
CGTTTTCATTTAAACCCATAGGTgtaaccatggaggtataaagaaaaaca
ggagttgaatgtgtcggtaattggtcgttaaagtcttttgatttctttta
taaaatgtatcaaaagaaaatctaaGCTCGCctgatgaaataagactttt
tagtagaactcaagtttgctctgaNTTAAGCTCGCctgatgaaataagac
tttttagtagaactcaagtttgctctgaacattctaattatcagtattga
agattgtagccttttaatatacgaaaattaaataaatcttcgtccacgaa
acaagttTGTGTTCCATTTTTCGTTATCTGTTCAATTTattttctcaggc
aagaaaatttataagcacacacaatttcagactcaatttatAGACATAAA
GTCGTTGGAGAAtcttggaggaaagtatcaagcaatagagttcgccttga
agaaaacattgatcgaaaaatcttattattTGACGAGGGATTGCCAAGTT
TGCAGGCcttttttttagtccaaatattttcttacactgatgtcagaaac
aatgaatctcgtctcaactaatttttaaagcttcaatgagccaataaaat
ttcaccgatggataaaagagcttattaaaaatgcacgataaatgagatta
tgagcatgcatacatcgtaacttttttaaccgtagggcgagcttggttac
aatagcatacttctcctgtttctttataccttcATGGTGTAACTTTGGGA
TTGCCTATTATTTTCTTTATATTAAAGCATACTTTTTTTGCTATTTGACA
GATGAAATTCCGGACAAAGGATGAAGGTCTAAATCACGGACATTTGAAAG
GAGAGGGTAATGCGCAATACCCTCAATTTGCGGTACGTATTCCATTACAG
tttactctctctaattcgatctttaaatgacttaaaattttcttcgaatt
agagaaagaatcGAATTGCAGAGAGTGATTTATACCACTTTTCAGCTTGG
GGTACTAATATTTcagtttgaattagagagagagttgaGTGTAGTAAGAT
TTTGTACTAAATCCTTGTGACGAGATAGAACTTAGAATTCCTCAATCTTT
AAGCTGAGTATGTTGCTATCTATAAAGTATCCTGTATGTGTGCAAGGCTC
ATAACATTTAATAGTACATTTTTTAGACTGTTGTAGTTTAGTTTCATCAG
ATTAACAACTACCCCAGCTTGCACgcaacgttgaaacaacgctgtgtgcc
aGCTTGGATAGTGGCTAAAACGATTCAACGCTATTTTGGCCAATTGATTG
CATAGCTATTCTGGTTTCTTAACACCATAATTGGCAGTGCGATATTTTAC
TTACTCACCGATTCTTAATAGAGAATTCTTTAATCTGTCCATTGTAGTTC
CTATGTGGTTTTCACTGGCCTACTTTCTGCTACTCAGTGTACTTGATCAT
CCATTTTATAGACATAAGGCTTCTTCAGGTAAAGGACTTTGTGGCTATTA
TCAAACAAGATTCACCTTATTTGATAGCTACCGTATTACTTATTTTAAAC
GCCcctcttcttttaaacgccccaccCCATCGTATAAACTTTTCCTGCTT
TTTCCAACAGGTTACAAATCCGACACCCAACACGTTGTTTATGGCGTCCG
TATGCATGCTAGTCACTGACGAAGACGGTCATTATATTCATCCACATGCT
GTGGTTGACAAGAAAACTAAAACAGAAGTTGGCGCCCGGTGCTTTTGTGT
TCCGCCTCATTCTACCACCACCGTGgagtaagtttgaaaaactgTTTTCT
CCCAAGGTACATTTGGCTGTTTCATTTAATATCAAAGCAGGGAGTAGTAC
GAATCTTTCCAAcctaaaaaaatcttgaatttatgTGGATAatcctggaa
aatggcaaaattttcgaaaagctctctggaaaaataaaaattctgtTGAC
CATCGAAAAATTCTACTTTATACTCTAAGGTGAGGGTGGACGATCTAAAA
TCAAACGTTTACCCAGTTTTCAGAATAAGTTAAACCTCCTGGAAATTTAA
ATTACGTCACCGGAAATTTGTAAAAACTTCCTTCGAACTCTTGAAATATA
AACGAGCTAACCATAATGCTTAGTCATTCCTTGGAGGCATGGAAGCACTT
agcaaaaaaaactaaaatcaaacTGCCTtgtaaaatgcaaaaaaattccC
TTCTTTTTGGACCACCTGAAAATGTTTACACACCCAATGTATGAATATAA
AATGGAATTTCCCATGAAACTTGAAACGTCAACGCTACAAATAGGTGTGT
GTTTggtcgtcaatcagttttttcaaagtcaaaattatatcatttttcct
atcggaaacacccgaaaaatctggaagCAATGtgacctctgtttttctat
ttatagtaatacacaggggtcaaattccagtttttccagGTGTTTCGGAT
AGGAAAAAtgcatgacgtaatcttgacttatgcatatcaaaaattttttg
acaactgGTGGGTCATATCAAAGGGCCCCGGCttgagggctgaggtatat
ttgagtaaattgacaaagcccaccatggttgagcaacggagaaaattttt
gaattttgaagggttcaaagtgctattttaggacctatttcaattcaatt
tgaaaaataattcaaaaataatggaaatcctttaaaagtacaagcagctt
ttttggtaaaaacataAGGGGCCATGCCCCCTCTGGTCCCCCGTTGACGG
GTCCCATGagcattaattgtgaattagcgtgaatagttttcaaaagggga
aaGAGGAGGCGCAGCCATGGTTtgtgccgacgggagaaattttcaaccct
ctcatagcattcgactttattttgaagactagctagcaactaATAAAGAC
AATTGGAAACAAGCTACAAGCTAAAtatttcaaaccatctgattatctct
TTCAGGTGATCAAAAAAGTTTAGGGTTTTGATGGCTAAGCTGTGTAGAGA
TTAGTAAATATTTAGTAACATTCGCTTTTCATTATGATTAGAATAGGAGA
CTTTGTTTTACTCTCCAGTCaaaattcatatttcaaaacttctaAAATAA
GGTAAAGCATGTTGCTTTTCATGTGAACAGAAGATAACTTTTTTTCCCTT
TTATTTTTCAGTATTAAAGATCTTGCCATTCGtcgaattttacaaaaata
ctttCGCTACTTTATCAAGAAACTCACGGACGAGAACGACAACCTTTACA
CTGCAGAAGATATTTATCAAGTTTATGATTTCAAACATTCGATCGAAAGT
CAACTCGATTTAGACAATTTACCAAAGGAAGCTCACAAGGGATATAAACA
AGGCGGGAAACAAGGCAAAGAGAACAAAAGTGAGTTTCACCGATTTGTGT
AATTGAAATATCTGGGTGTTCCTAACAATTTTCTGGTATATATATGATTA
TCCTCCACCTCTAGGCAAAACGCactgtcgaatatttttagatatccgat
agcaaaatatctcctctgtagcagcgagcataaagaaaatagtttattga
tcaaataattatttaaatgtcACATATATAAAAACAGATAAACAGAAAGG
TCTTTTTAACAAAAGGGAaaggaaattcgaacgttttgtaattaa Coding sequence (CDS) from alignment at scaffold_154:447013..451057+ >TCONS_00049223 ID=TCONS_00049223|Name=TCONS_00049223|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_154:447013..451057+ (Clytia hemisphaerica)
ccaATTAGAAGAGTTCAATGTATCTTTCTTGTTTTTCAGGACAAAATGTA
CGGTAAACCGTCTAACCATCAAACGCTCAGACAATTGAGTAACGAACATT
GTGTTCAAGATGTGGAAGAAGCGCAGCCGACGGCCGAATGGACAGTTCAT
CCCGCCAATATGAAATTCCGGACAAAGGATGAAGGTCTAAATCACGGACA
TTTGAAAGGAGAGGGTAATGCGCAATACCCTCAATTTGCGGTTACAAATC
CGACACCCAACACGTTGTTTATGGCGTCCGTATGCATGCTAGTCACTGAC
GAAGACGGTCATTATATTCATCCACATGCTGTGGTTGACAAGAAAACTAA
AACAGAAGTTGGCGCCCGGTGCTTTTGTGTTCCGCCTCATTCTACCACCA
CCGTGgaTATTAAAGATCTTGCCATTCGtcgaattttacaaaaatacttt
CGCTACTTTATCAAGAAACTCACGGACGAGAACGACAACCTTTACACTGC
AGAAGATATTTATCAAGTTTATGATTTCAAACATTCGATCGAAAGTCAAC
TCGATTTAGACAATTTACCAAAGGAAGCTCACAAGGGATATAAACAAGGC
GGGAAACAAGGCAAAGAGAACAAAAGTGAGTTTCACCGATTTGTGTAAcc
aATTAGAAGAGTTCAATGTATCTTTCTTGTTTTTCAGGACAAAATGTACG
GTAAACCGTCTAACCATCAAACGCTCAGACAATTGAGTAACGAACATTGT
GTTCAAGATGTGGAAGAAGCGCAGCCGACGGCCGAATGGACAGTTCATCC
CGCCAATATGAAATTCCGGACAAAGGATGAAGGTCTAAATCACGGACATT
TGAAAGGAGAGGGTAATGCGCAATACCCTCAATTTGCGGTTACAAATCCG
ACACCCAACACGTTGTTTATGGCGTCCGTATGCATGCTAGTCACTGACGA
AGACGGTCATTATATTCATCCACATGCTGTGGTTGACAAGAAAACTAAAA
CAGAAGTTGGCGCCCGGTGCTTTTGTGTTCCGCCTCATTCTACCACCACC
GTGgaTATTAAAGATCTTGCCATTCGtcgaattttacaaaaatactttCG
CTACTTTATCAAGAAACTCACGGACGAGAACGACAACCTTTACACTGCAG
AAGATATTTATCAAGTTTATGATTTCAAACATTCGATCGAAAGTCAACTC
GATTTAGACAATTTACCAAAGGAAGCTCACAAGGGATATAAACAAGGCGG
GAAACAAGGCAAAGAGAACAAAAGTGAGTTTCACCGATTTGTGTAAccaA
TTAGAAGAGTTCAATGTATCTTTCTTGTTTTTCAGGACAAAATGTACGGT
AAACCGTCTAACCATCAAACGCTCAGACAATTGAGTAACGAACATTGTGT
TCAAGATGTGGAAGAAGCGCAGCCGACGGCCGAATGGACAGTTCATCCCG
CCAATATGAAATTCCGGACAAAGGATGAAGGTCTAAATCACGGACATTTG
AAAGGAGAGGGTAATGCGCAATACCCTCAATTTGCGGTTACAAATCCGAC
ACCCAACACGTTGTTTATGGCGTCCGTATGCATGCTAGTCACTGACGAAG
ACGGTCATTATATTCATCCACATGCTGTGGTTGACAAGAAAACTAAAACA
GAAGTTGGCGCCCGGTGCTTTTGTGTTCCGCCTCATTCTACCACCACCGT
GgaTATTAAAGATCTTGCCATTCGtcgaattttacaaaaatactttCGCT
ACTTTATCAAGAAACTCACGGACGAGAACGACAACCTTTACACTGCAGAA
GATATTTATCAAGTTTATGATTTCAAACATTCGATCGAAAGTCAACTCGA
TTTAGACAATTTACCAAAGGAAGCTCACAAGGGATATAAACAAGGCGGGA
AACAAGGCAAAGAGAACAAAAGTGAGTTTCACCGATTTGTGTAAccaATT
AGAAGAGTTCAATGTATCTTTCTTGTTTTTCAGGACAAAATGTACGGTAA
ACCGTCTAACCATCAAACGCTCAGACAATTGAGTAACGAACATTGTGTTC
AAGATGTGGAAGAAGCGCAGCCGACGGCCGAATGGACAGTTCATCCCGCC
AATATGAAATTCCGGACAAAGGATGAAGGTCTAAATCACGGACATTTGAA
AGGAGAGGGTAATGCGCAATACCCTCAATTTGCGGTTACAAATCCGACAC
CCAACACGTTGTTTATGGCGTCCGTATGCATGCTAGTCACTGACGAAGAC
GGTCATTATATTCATCCACATGCTGTGGTTGACAAGAAAACTAAAACAGA
AGTTGGCGCCCGGTGCTTTTGTGTTCCGCCTCATTCTACCACCACCGTGg
aTATTAAAGATCTTGCCATTCGtcgaattttacaaaaatactttCGCTAC
TTTATCAAGAAACTCACGGACGAGAACGACAACCTTTACACTGCAGAAGA
TATTTATCAAGTTTATGATTTCAAACATTCGATCGAAAGTCAACTCGATT
TAGACAATTTACCAAAGGAAGCTCACAAGGGATATAAACAAGGCGGGAAA
CAAGGCAAAGAGAACAAAAGTGAGTTTCACCGATTTGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049223-exon-scaffold_154-1491911889:447013..447173 | TCONS_00049223-exon-scaffold_154-1491911889:447013..447173 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1510915933:447013..447173 | TCONS_00049223-exon-scaffold_154-1510915933:447013..447173 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1575043694:447013..447173 | TCONS_00049223-exon-scaffold_154-1575043694:447013..447173 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1491911889:448214..448294 | TCONS_00049223-exon-scaffold_154-1491911889:448214..448294 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1510915933:448214..448294 | TCONS_00049223-exon-scaffold_154-1510915933:448214..448294 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1575043694:448214..448294 | TCONS_00049223-exon-scaffold_154-1575043694:448214..448294 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1491911889:449023..449189 | TCONS_00049223-exon-scaffold_154-1491911889:449023..449189 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1510915933:449023..449189 | TCONS_00049223-exon-scaffold_154-1510915933:449023..449189 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1575043694:449023..449189 | TCONS_00049223-exon-scaffold_154-1575043694:449023..449189 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1491911889:450574..451057 | TCONS_00049223-exon-scaffold_154-1491911889:450574..451057 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1510915933:450574..451057 | TCONS_00049223-exon-scaffold_154-1510915933:450574..451057 | Clytia hemisphaerica | exon |
| TCONS_00049223-exon-scaffold_154-1575043694:450574..451057 | TCONS_00049223-exon-scaffold_154-1575043694:450574..451057 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:447013..451057 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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