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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049235 ID=TCONS_00049235|Name=TCONS_00049235|organism=Clytia hemisphaerica|type=transcript|length=3964bpRun BLAST on NCBI protein sequence of TCONS_00049235-protein >TCONS_00049235-protein ID=TCONS_00049235-protein|Name=TCONS_00049235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1042bp MARCYMVLRIVFVLVLIASFIAIIYISKPITQDELLGSKIRKASKRHQNSRun BLAST on NCBI transcript from alignment at scaffold_154:773150..792953+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049235 ID=TCONS_00049235|Name=TCONS_00049235|organism=Clytia hemisphaerica|type=transcript|length=19804bp|location=Sequence derived from alignment at scaffold_154:773150..792953+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_154:773150..792953+ >TCONS_00049235 ID=TCONS_00049235|Name=TCONS_00049235|organism=Clytia hemisphaerica|type=CDS|length=56322bp|location=Sequence derived from alignment at scaffold_154:773150..792953+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049235 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 5.056e-85 Identity = 147/324 (45.37%), Postives = 199/324 (61.42%), Query Frame = 3
Query: 2175 KCRTEGNLPLFSGVAVGVVNEYMXXXXXXXXXXXXXXXIVNVEENHDVLRGDRYLIEIELSVENEASTRRLSTYIY------------------------RDAVKNKLYRPSGFVWNPKATVHVIVPVKNQGRWVQHFIDNMEQVYLETQDVNLNVIIADFNSSDIDIKKSFDRSRLKRYNFLNLDGPFERAFGLQAGADLVKNEDDIIFTCDLHLDIPPILIDTIRKHTIKKRLSFAPMVHRLSCGYTPDLPYGLWETEGYGLFSITKHDFDRIGGMNTKEFKTKWGGEDWEFLDRALGHGLEVERLRVPNFFHHYHSRKKMW 3074
+C GNL L AV V +YM+ + +H ++ L +IVNVE+ D RG R+L+E+EL E RLS Y++ R + +L RP W VH IVPVKNQ RWV F+ +M ++ T D +V++ DF S D+D++++ +RL RY +L G FER+ GLQAG D V++ I+F CDLH+ PP ++D IRKH ++ RL+FAP+V RLSCG +P P+G WE G+GLF I K DFDR+GGMNT+EF+ +WGGEDWE LDR L GLEVERLR+ NF+HHYHS++ MW
Sbjct: 704 RCNVSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELELQ-ERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMW 1026 HSP 2 Score: 152.525 bits (384), Expect = 3.479e-37 Identity = 95/286 (33.22%), Postives = 143/286 (50.00%), Query Frame = 3
Query: 462 ESVNGFLNVHFWGSFCGSRIEDLKRNIHFPYYPSEVSSLTKFYIQRYETGYGQRIFGYLHPPESGEFTFAVSCDDNCEVWLSSSDNPNNMKLIASVGTFKDPANTKIADFQAYPSQISKPILLNKNNKYYVEVLHKQ-GAYKDHVLLTWLA--PTWDHIRTINASYISSYIDVNEQIHDVNDYRYLIPVTKACQGLEDLDVTNSIYYYNRTHNSFTMYDYREDFFKLKSVDMSDFTNLLPRIHYNPTYVL-DFMPKRYEGVKLMHESSIYPSDYTELTHMTRYTNC 1307
E G +N+H + +CG + L+RN+HFP +P +++ K + YG RIFG++HP G+ F+V+ DDN E WLS ++P +L+A VG T +F + SQ+SKP L + +YY E+LHKQ DHV + W A P I++++IS Y D + D + +P + A T D R+ FF ++ S N+L Y PTYV+ DF RY+G++ ++ S +YP+DYT LTHM C
Sbjct: 115 EEYKGQVNLHVFEDWCGGAVGHLRRNLHFPLFPHTRTTVKKLAVSPKWKNYGLRIFGFIHPARDGDVQFSVASDDNSEFWLSLDESPAAAQLVAFVGKTGS-EWTAPGEFTKFSSQVSKPRRLMASRRYYFELLHKQDDRGSDHVEVGWRAFLPGL-KFEVISSAHISLYTDESALKMDHVAH---VPQSPASH-------VGGRPPQEETSADMLRPDPRDTFFLTPRMESSSLENVLEPCAYAPTYVVKDFPIARYQGLQFVYLSFVYPNDYTRLTHMETDNKC 388 The following BLAST results are available for this feature:
BLAST of TCONS_00049235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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