TCONS_00049268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049268
Unique NameTCONS_00049268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049268 ID=TCONS_00049268|Name=TCONS_00049268|organism=Clytia hemisphaerica|type=transcript|length=1062bp
cttttctagACAAATTATTTACTTAATTCGAACATTAAATGTGTAGGTAG
ATTTTCTTTGAGGCTGTAACTTCGCAAATAGCGAAAACCAATGTCTTTTG
TAATTGGATTTTCAAGGGGGAGGATGAATGGCTTTCACCTACCGTATGGA
CGGGGTAAAAACGTTTGttcgttttttcgaaaaatataaagAAGGCTTCG
GGAAACCACCCGAAGACTATTATCTTGGTAACGAAAACCTCCATCAGCTT
ACCAAATCAGGAGAATACGAACTTTATTATTTAACTGATGCTAGAGATAC
TCCCACCACATATCATGGTTGGTATGGTCAATTTAGTGTATCTGACGAAG
CAGATTTCTATCGATTAAGTATTGGTGATTTCAGAGAAGGCACTAATACA
CTAGCAATATCAGATAGTATGCAATTTTCAGCACATGAAGTGGGCAAAGA
TAAAGCAGGTGCATTCTGTGCATTAAATAGACAAGGAGGGTTTTGGTACA
ATGCTTGTGGAAGTATGTTTCCCCATAGCAAGGCTAATGGGATTCGTCCA
CCAGGGGAATGTATGGGACTTTACCCTGGGAACAGTCTCGGTATGGTATG
cacaaaaacatttcaaatatttatgagaaagaaaagatgaaaataaatcC
ATGAATAAAATATAAGAGATCCCGGCTCGCTGACACAAACAGTCAAACAA
CACGTCAATCTAACGTCGATCTAACTTTCATAACATCTTAAATATGACGT
TAAATgtacgttaaaacaacgtttaCTACCACCTGGGAAGAGCTTTTTTT
CGCAAGAACCCTTTAGGATATTTTGCGAATCTGGACATTTCATGGTAAAT
AAAGGATATCATGAATATTTCATTTTGGAAAAGTGCATCTTATTTTAGAA
TCAAAGGAGTTTGTTTTTAGATTTGACACTTTATTATAAATATTTAAGct
ttgtattttttaaggaaaattatatATGTATGTcatgtttgtaattttta
aggaaaatcgaAATCTTTGTATTACTATTATGCAACTATACAAGGAAAAA
TAATAAATCATA
Run BLAST on NCBI

protein sequence of TCONS_00049268-protein

>TCONS_00049268-protein ID=TCONS_00049268-protein|Name=TCONS_00049268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MAFTYRMDGVKTFVRFFEKYKEGFGKPPEDYYLGNENLHQLTKSGEYELY
YLTDARDTPTTYHGWYGQFSVSDEADFYRLSIGDFREGTNTLAISDSMQF
SAHEVGKDKAGAFCALNRQGGFWYNACGSMFPHSKANGIRPPGECMGLYP
GNSLGMVCTKTFQIFMRKKR
Run BLAST on NCBI

transcript from alignment at scaffold_154:362483..363544-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049268 ID=TCONS_00049268|Name=TCONS_00049268|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at scaffold_154:362483..363544- (Clytia hemisphaerica)
CTTTTCTAGACAAATTATTTACTTAATTCGAACATTAAATGTGTAGGTAG
ATTTTCTTTGAGGCTGTAACTTCGCAAATAGCGAAAACCAATGTCTTTTG
TAATTGGATTTTCAAGGGGGAGGATGAATGGCTTTCACCTACCGTATGGA
CGGGGTAAAAACGTTTGTTCGTTTTTTCGAAAAATATAAAGAAGGCTTCG
GGAAACCACCCGAAGACTATTATCTTGGTAACGAAAACCTCCATCAGCTT
ACCAAATCAGGAGAATACGAACTTTATTATTTAACTGATGCTAGAGATAC
TCCCACCACATATCATGGTTGGTATGGTCAATTTAGTGTATCTGACGAAG
CAGATTTCTATCGATTAAGTATTGGTGATTTCAGAGAAGGCACTAATACA
CTAGCAATATCAGATAGTATGCAATTTTCAGCACATGAAGTGGGCAAAGA
TAAAGCAGGTGCATTCTGTGCATTAAATAGACAAGGAGGGTTTTGGTACA
ATGCTTGTGGAAGTATGTTTCCCCATAGCAAGGCTAATGGGATTCGTCCA
CCAGGGGAATGTATGGGACTTTACCCTGGGAACAGTCTCGGTATGGTATG
CACAAAAACATTTCAAATATTTATGAGAAAGAAAAGATGAAAATAAATCC
ATGAATAAAATATAAGAGATCCCGGCTCGCTGACACAAACAGTCAAACAA
CACGTCAATCTAACGTCGATCTAACTTTCATAACATCTTAAATATGACGT
TAAATGTACGTTAAAACAACGTTTACTACCACCTGGGAAGAGCTTTTTTT
CGCAAGAACCCTTTAGGATATTTTGCGAATCTGGACATTTCATGGTAAAT
AAAGGATATCATGAATATTTCATTTTGGAAAAGTGCATCTTATTTTAGAA
TCAAAGGAGTTTGTTTTTAGATTTGACACTTTATTATAAATATTTAAGCT
TTGTATTTTTTAAGGAAAATTATATATGTATGTCATGTTTGTAATTTTTA
AGGAAAATCGAAATCTTTGTATTACTATTATGCAACTATACAAGGAAAAA
TAATAAATCATA

Coding sequence (CDS) from alignment at scaffold_154:362483..363544-

>TCONS_00049268 ID=TCONS_00049268|Name=TCONS_00049268|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_154:362483..363544- (Clytia hemisphaerica)
ATGGCTTTCACCTACCGTATGGACGGGGTAAAAACGTTTGTTCGTTTTTT
CGAAAAATATAAAGAAGGCTTCGGGAAACCACCCGAAGACTATTATCTTG
GTAACGAAAACCTCCATCAGCTTACCAAATCAGGAGAATACGAACTTTAT
TATTTAACTGATGCTAGAGATACTCCCACCACATATCATGGTTGGTATGG
TCAATTTAGTGTATCTGACGAAGCAGATTTCTATCGATTAAGTATTGGTG
ATTTCAGAGAAGGCACTAATACACTAGCAATATCAGATAGTATGCAATTT
TCAGCACATGAAGTGGGCAAAGATAAAGCAGGTGCATTCTGTGCATTAAA
TAGACAAGGAGGGTTTTGGTACAATGCTTGTGGAAGTATGTTTCCCCATA
GCAAGGCTAATGGGATTCGTCCACCAGGGGAATGTATGGGACTTTACCCT
GGGAACAGTCTCGGTATGGTATGCACAAAAACATTTCAAATATTTATGAG
AAAGAAAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031275XLOC_031275Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049268-proteinTCONS_00049268-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049268-exon-scaffold_154-1575043694:362483..363544TCONS_00049268-exon-scaffold_154-1575043694:362483..363544Clytia hemisphaericaexon
TCONS_00049268-exon-scaffold_154-1510915933:362483..363544TCONS_00049268-exon-scaffold_154-1510915933:362483..363544Clytia hemisphaericaexon
TCONS_00049268-exon-scaffold_154-1491911889:362483..363544TCONS_00049268-exon-scaffold_154-1491911889:362483..363544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:362483..363544 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0963093	0	0	0	0	0	0	0.2285	0.163913	0	0	1.3176	1.67099	0.136358	0.33381	0.192625	0.326574	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00049268 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.833e-22
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 2 
Query:  104 LDFQGGG*MAFTYRMDGVKTFVRFFEKYKEGFGKPPEDYYLGNENLHQLTKSGEYELYY-LTDARDTPTTYHGWYGQFSVSDEADFYRLSIGDFREGT--NTLAISDSMQFSAHEVGKDKAGAFCALNRQGGFWYNAC 508
            +D +GGG + F  R DG   F R +  Y+ GFG    +++LGNENLHQLT  G +EL   L D     T  H  Y  F +  E D Y+L++G F EGT  ++L++     F+ ++   D + + CA+   G +WY +C
Sbjct:  123 MDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAH--YATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASC 258
The following BLAST results are available for this feature:
BLAST of TCONS_00049268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN39.833e-2236.96Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2[more]
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