TCONS_00049279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049279
Unique NameTCONS_00049279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049279 ID=TCONS_00049279|Name=TCONS_00049279|organism=Clytia hemisphaerica|type=transcript|length=2197bp
AACAACAACGTGAACAACAACGACCGTCACTCTAGCAACAACATGAACAA
CAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACAACAACATGA
ACAACAACGACCGTCAATCTATCAATAACGACCGTCACTCTAACAATAAC
ATGAACAACAACGACCGTCACTCTAGCAACAACATGAACAACAACGACCG
TCACTCTAGCAACAATATGAACAACAACGACCGTCAATCTAACAATAACA
TGAACAACAACGACCGTCAATCTAACAATAACAACCGTCAATCTAACAAC
AACATGATCAATAACAACCGTCAATCTAACAACAACATGAACAACAACGA
CCGTCAATCTAACAACAACGACCGTCAATCTAACAACAACGACCGTCAct
ctaacaacaacaacaacaacgatcAAATATCGCATAATAGCAATGTAAAC
GCTCGTGAATCTAAAACCGAAGTTGCAAGCTTAAGAGACCGATCTGAAAC
CACTAACAAAGATAGACAACGAAACAACTACAACTACAAAAACTTCAACA
ACAGACGATTTAACAATCTCAAAAAATACAACCATCAAAACAAACTAGAG
TGTGACCACGATCATATGCGATTCACCTTTAAACCATCATTTGGTCGGGA
TATCGAGATTGAAAGAGTGACATTGAGCAGTGATTCATGTAGGATGAGAT
ACGATCGTATGAGAGATGAATACATGACTGTGACAAGCTATGAAGAATGT
GGCACGGGAATGGAAGAGGAGGAGGAGAACAtcgtttttatgAACGTTGC
ACGCGTCATCTACCGCAACACTACCATTAAAAACGCCTTGATTGAACGTA
AGAACATCTACAATATCGGATTAGAATGTCGATTGAAGAAAACTGCAGTC
AACACGATCAAGGGAAACAGAGAAGATGATTCAGGAATGATCGTCAGTCC
ACAATCCTACGAAATCAATGATTATGCTAGAAGTACTGGAAACTTCAGAA
TTGATTTCCAAGTTTACAAATCAAACCAATACAACCACTCATACGGTGTT
GAGGAATTCCCAATCTACTTGGGAATCAGTAACCGCATCTACTTTGAACT
CTCCATGGATCAACCAGACTTGACACTCATTCCACATGAATGTTACGCCA
CTGCTGACCGAAGTTACCTATCCAGACCGCGATATCACATCATTGAAGAA
AGATGTCCAAAAGACGAGACGTACGTCGAACACATGCAAGATGAGAATAC
CTACCGATTCAGTATCCAAGCTTTCACATTCAAGGACGGACAAGACAGTA
TTTATGTTCACTGTAAANAATACCTACCGATTCAGTATCCAAGCTTTCAC
ATTCAAGGACGGACAAGACAGCATTTATGTTCACTGTAAATCATACGTCT
GCCAAAACACAAGCAACGAGCTGTGCAACTTTGGATGCAACAAAAATGGA
AACAGCAACGACCGTTTCCAAAACAACAACAGGAACAGCAACGACCGTTT
CCAAAATAACAACAGAAACAGCAACGACCGTTTCCAAAACAACAACATGA
ACCGCAACGACCCTAACAACTTCCTTTTAAGGAGATCAAGAAGAAGCGTA
GAAGCAAATACAATTGGACAAATTCATGGTTTCATGACATCCACATTAGA
AATCAAAGTCACAACCACCGATAAGAAAGTCGCAGCCAGAATCGAAGTTA
CCGAGACATCCGAAGATAAATCCATCCTGAGCTATTTGCCATACCTCCAA
ATCCCATTGGTTTTACTAGTTGTCGGTGCCGTAGTAATGGCATGGAGATG
TATCAAACGAAATAGAGCCGCATCTAAAGAAGTGAATTGAGAGAAAAAAC
TATTTGTTTACGATGTAAACTAAACTTTAACACAGGAGGATCTTGTTTAA
TGAAAATCGATCCTTATTGAAGATGGTCCAAGTCCAGCTAAATTGAAGGC
ATCTATAATGGTCTAATTTTAGCCAATCGTTTTCAGAAATTTAACCGACT
TAGATGAATAAAATTTATAGTATTTTACAAAAGTTTACCAGTTTGTTAAA
ATTAGATAGTTTTTGTGTTTCTTTGAAATGTATTAAAGTGCCCATATTTA
TTTAGAAATATCTAGAAAcatatattttgttttgaatgaaatattatgaa
aaaattAATCTATACCTTTAGAGATTTTTCTCAAACTTTTTTGTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_154:521349..526911-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049279 ID=TCONS_00049279|Name=TCONS_00049279|organism=Clytia hemisphaerica|type=transcript|length=5563bp|location=Sequence derived from alignment at scaffold_154:521349..526911- (Clytia hemisphaerica)
AACAACAACGTGAACAACAACGACCGTCACTCTAGCAACAACATGAACAA
CAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACAACAACATGA
ACAACAACGACCGTCAATCTATCAATAACGACCGTCACTCTAACAATAAC
ATGAACAACAACGACCGTCACTCTAGCAACAACATGAACAAAAACGACCG
TCAATCTAACAATAACGACCGTCAATCTAACAACAACATGAACAACAACG
ACCGTCACTCTAGCAACAACATGAACAACAACGACCGACAATCTAACAAC
CACATGAACAACAACGACCGTCAATCTAACAACAACATGAACAACAACGA
CCGTCACTCTAGCAACAACATGAACAACAACGACCGACAATCTAACAACC
ACATGAACAACAACGACCGTCAATCCAACAATAACAACCGTCAATCTAAC
AACAACATGAACAAAAACGACCGTCAATCCAACAATAACGACCGTCAATC
TAACAACAACATGAACAACAACAATCGTCACTCTAGCAACAACATGAACA
ACAACGACCGTCACTCTAGCAACAATATGAACAACAACGACCGTCAATCT
AACAATAACATGAACAACAACGACCGTCAATCCAACAATAACAACCGTCA
ATCTAACAACAACATGAACAACAACGACCGTCACTCTAGCAACAACATGA
ACAACAACGACCGACAATCTAACAACCACATGAACAACAACGACCGTCAA
TCTAACAATAACATGAACAACAACGACCGTCAATCTAACAATAACAACCG
TCAATCTAACAACAACATGATCAATAACAACCGTCAATCTAACAACAACA
TGAACAACAACGACCGTCAATCTAACAACAACGACCGTCAATCTAACAAC
AACGACCGTCACTCTAACAACAACAACAACAACGATCAAATATCGCATAA
TAGCAATGTAAACGCTCGTGAATCTAAAACCGAAGTTGCAAGCTTAAGAG
ACCGATCTGAAACCACTAACAAAGATAGACAACGAAACAACTACAACTAC
AAAAACTTCAACAACAGACGATTTAACAATCTCAAAAAATACAACCATCA
AAACAAACTAGAGTGTGACCACGATCATATGCGATTCACCTTTAAACCAT
CATTTGGTCGGGATATCGAGATTGAAAGAGTGACATTGAGCAGTGATTCA
TGTAGGATGAGATACGATCGTATGAGAGATGAATACATGACTGTGACAAG
CTATGAAGAATGTGGCACGGGAATGGAAGAGGAGGAGGAGAACATCGTTT
TTATGGTAAGTTTTATAGAAATTACATTTGATTTTCATAGATATTTTTTA
TGATATAGAAAGAAAGGGCAGTTCTGTGTTGACAAAGCAGAACTTTCAAC
GGCACTAAAAACTAGATCTAGTGCTCGATGCATTGCACCAGTTACCATTA
GGGTATCACTTTCAAAAAAACTCCGATCAAAGATTTTGCTTGGCTAAGAT
TGAGAAGCTGCTTCCAGGGTTTAAATACAGCTCAGTGACTGCAATATTCC
TTCATTCTAGAATGTTGCAGGACGTGTAGGACGTAGGGTCTACGCCAATT
TGCTTAGTTTCATTTAATTGTAGCCTCAGGATGCGGTGCAATGAGAAAAA
ATCTTCCATGTAAATTCATTAACTGTCTCCTAAAAAGCCGACCACGCCGC
TATGGGTTGGTAGGTGTATTTGAACTATATATGCGTGTAAAGGACTATTC
CTTCATTCTAGAACGTTGCACGCGTCATCTACCGCAACACTACCATTAAA
AACGCCTTGATTGAACGTAAGAACATCTACAATATCGGATTAGAATGTCG
ATTGAAGAAAACTGCAGTCAACACGATCAAGGGAAACAGAGAAGATGATT
CAGGAATGATCGTCAGTCCACAATCCTACGAAATCAATGATTATGCTAGT
AAGTGGTATTTGTGACTCTATCTCTATATGTCACGACAAAATCTATTAGG
GGGGGTGTTAAAATGTCAGACATGACGTTTAGTGTCGTGGTGGTACGCCC
AAAAAGAACGAATCCAAGAACGAGGTTCAATGAAATGCTTCTAATACTAC
CCAGCTGGCACACAACGTTGTTTCAACGTTTATCTAACGTTCACAACATC
CATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGTCAGCTGGGTAG
TCAAATGACTATAGTCTTACGGCTTGGGGACACGAAAAGTCTTTTTCGCG
TTGGTGCAATGCAACATGCTCTATCCCACTAACACAAGAAAATGCGTGTC
CCATGGTTTCTTTTTTTGTTTCATGGGACAAAAAGTGAGGGAAATACCCA
AAAGACACAGAGATTTTGTCCCAGAGACAAAAGTGAGATATCACTTTTAT
TGGTAGAAAGAAAAATGGGTAGATACACGAGAAAGCTTTTCAGGTTGGTG
ACATGGAGCATGTCGCATTGCACCAACGTGAAAAAAACTTCTCGTGTCTC
CCCAAGCCTTTACGTCAAATTTTGGATTTTTTTTATCATTTTGTCATTTT
GTCATCTACAGCAGATCAAAGGCTTTAATTCCCGATTTCTATTTTCAGGA
AGTACTGGAAACTTCAGAATTGATTTCCAAGTTTACAAATCAAACCAATA
CAACCACTCATACGGTGTTGAGGAATTCCCAATCTACTTGGGAATCAGTA
ACCGCATCTACTTTGAACTCTCCATGGATCAACCAGACTTGACACTCATT
CCACATGAATGTTACGCCACTGCTGACCGAAGTTACCTATCCAGACCGCG
ATATCACATCATTGAAGAAAGGTGAGAAATTGTGATTTTGCTAAATTACT
CTTTTTATAAGAACAAACTATATAAGAACATAAAAGCTTCGATGGCCAAA
ATATTAAGGACATGTTATGCACATTTCAAGGCTTTGTGGACTCTGAAACA
CCCGATTTCTTAGGAAAATGGACAAGATTAACCCCAAAATGGTGAAAATA
AAAATATTTTAGGCTTAAAACTCAAAAAGTAAAGAACATCCGAAAGCTTC
GAAAATGTGGGGTTTTCTTATATAAAAGAACGTTTATGAACAGGCACGAC
ACATAGAATAACAACAGGTACATCTGAAGTACCAGAATTATTGCGATCAA
GCCATGATACTTTTGTTTTTCTTGCACCTATACTTATAACGAAATTTTGA
CTTTCAAATTGGTATCACGGCTTTATCATCGAAGAAGGGGCAGCGTTAAA
ATTACAACCAAAAACTTGCACACACCGTTGTTTCAACGTTCATCTTATGT
TATATGGACGTTGTGAACATTAGATAAACGTTGAAATAACGTTGTGTGCA
GCTGGGAAACTGTTGACCATACATATAATTTCTGTTAGATGGCGGGTGGG
TAAGAAAAACTTATAAACACAGCAGATTCTATACAATTTGACCTCATTTT
CGTTCCCCTTAAAATACACTCGTAAAGATAATTCCCTAATCCCAACATCT
TTATAGAATTCGAAAGAATTAAATTTTCTGCTTATGGTTAAGATTAGCGA
AACAGTGACCTTTCTGGTCTTANCATCTTCAGAATTCGGAAGAATTAAAT
TTTCTGCTTAGGGTTAAGATTAGCGAAACAGTGACCTTTCTAGTCTAAAA
TCTTTAGATGTCCAAAAGACGAGACGTACGTCGAACACATGCAAGATGAG
AATACCTACCGATTCAGTATCCAAGCTTTCACATTCAAGGACGGACAAGA
CAGTATTTATGTTCACTGTAAANAATACCTACCGATTCAGTATCCAAGCT
TTCACATTCAAGGACGGACAAGACAGCATTTATGTTCACTGTAAATCATA
CGTCTGCCAAAACACAAGCAACGAGCTGTGCAACTTTGGATGCAACAAAA
ATGGAAACAGCAACGACCGTTTCCAAAACAACAACATGAACAGCAACGAC
CGTTTCCAAAACAACAACATGAACAGCAACGACCGTTTCCAAAACAATAA
TATGAACCGCAACGACCGTTTCCAAAACAATAACATGAACAGCAACGACC
GTTTCCAAAACAATAACATGAACAGCAACGACCGTTTCCAAAATAACAAC
AGGAACAGCAACGACCGTTTCCAAAATAACAACAGAAACAGCAACGACCG
TTTCCAAAACAACAACATGAACCGCAACGACCCTAACAACTTCCTTTTAA
GGAGATCAAGAAGAAGCGTAGAAGCAAATACAATTGGACAAATTCATGGT
TTCATGACATCCACATTAGAAATCAAAGTCACAACCACCGGTAAAAATCT
TATTCTTTTAACTAAACATTAGGGTTTTGTGTGTGAACGGAAATTAGCCA
GGAAGCCATTCGGAATATCAGATAACAGAGCAGAACGAACCAAATAGCTT
TGCACATGATGTCACTGATAAGAAGGCACACGACTTTTAACCCAAAAAGT
TACCAAAAAATAATTTTATCCAAGCAATACCGATTTCTTATTCTTTTTTG
TTATCTTGAATCACCGACCATGGGAAATGCGAATTGTCAGGAGGATTTGA
GCAAAATCTTATTCAATACTCTCGGGTACCTAATAGCCGGGGGGTTGGAA
TAAGCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAATAAAAATGTCCTGGGT
GGAAAATTTTTGAAAAGGAGGCTAATACAGCTGAATTAGGACAAAAAAGG
GAACTTTCAAAAACATTTTTCCAAAAATTAATAAGCGGGGGAGTTGGAAT
AAGAATGTCCTGGGTGGAAAATTTTCCAGTTCTGTGAGCCTTACAAAAAA
TTAACCCAAAAATTAAAAAGAAGCATCTTACAAGCATTTCAATTGGATGA
TCCACATTTTCAACTTTTATATTCCTTCATTTTTAGATAAGAAAGTCGCA
GCCAGAATCGAAGTTACCGAGACATCCGAAGATAAATCCATCCTGAGCTA
TTTGCCATACCTCCAAATCCCATTGGTTTTACTAGTTGTCGGTGCCGTAG
TAATGGCATGGAGATGTATCAAACGAAATAGAGCCGCATCTAAAGAAGTG
AATTGAGAGAAAAAACTATTTGTTTACGATGTAAACTAAACTTTAACACA
GGAGGATCTTGTTTAATGAAAATCGATCCTTATTGAAGATGGTCCAAGTC
CAGCTAAATTGAAGGCATCTATAATGGTCTAATTTTAGCCAATCGTTTTC
AGAAATTTAACCGACTTAGATGAATAAAATTTATAGTATTTTACAAAAGT
TTACCAGTTTGTTAAAATTAGATAGTTTTTGTGTTTCTTTGAAATGTATT
AAAGTGCCCATATTTATTTAGAAATATCTAGAAACATATATTTTGTTTTG
AATGAAATATTATGAAAAAATTAATCTATACCTTTAGAGATTTTTCTCAA
ACTTTTTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031278XLOC_031278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049279-exon-scaffold_154-1575043694:526729..526911TCONS_00049279-exon-scaffold_154-1575043694:526729..526911Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1575043694:526336..526368TCONS_00049279-exon-scaffold_154-1575043694:526336..526368Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1575043694:525607..526182TCONS_00049279-exon-scaffold_154-1575043694:525607..526182Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1575043694:524964..525150TCONS_00049279-exon-scaffold_154-1575043694:524964..525150Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1575043694:524091..524313TCONS_00049279-exon-scaffold_154-1575043694:524091..524313Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1575043694:522977..523254TCONS_00049279-exon-scaffold_154-1575043694:522977..523254Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1575043694:522622..522811TCONS_00049279-exon-scaffold_154-1575043694:522622..522811Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1575043694:521349..521875TCONS_00049279-exon-scaffold_154-1575043694:521349..521875Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:526729..526911TCONS_00049279-exon-scaffold_154-1510915933:526729..526911Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:526336..526368TCONS_00049279-exon-scaffold_154-1510915933:526336..526368Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:525607..526182TCONS_00049279-exon-scaffold_154-1510915933:525607..526182Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:524964..525150TCONS_00049279-exon-scaffold_154-1510915933:524964..525150Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:524091..524313TCONS_00049279-exon-scaffold_154-1510915933:524091..524313Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:522977..523254TCONS_00049279-exon-scaffold_154-1510915933:522977..523254Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:522622..522811TCONS_00049279-exon-scaffold_154-1510915933:522622..522811Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1510915933:521349..521875TCONS_00049279-exon-scaffold_154-1510915933:521349..521875Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:526729..526911TCONS_00049279-exon-scaffold_154-1491911889:526729..526911Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:526336..526368TCONS_00049279-exon-scaffold_154-1491911889:526336..526368Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:525607..526182TCONS_00049279-exon-scaffold_154-1491911889:525607..526182Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:524964..525150TCONS_00049279-exon-scaffold_154-1491911889:524964..525150Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:524091..524313TCONS_00049279-exon-scaffold_154-1491911889:524091..524313Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:522977..523254TCONS_00049279-exon-scaffold_154-1491911889:522977..523254Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:522622..522811TCONS_00049279-exon-scaffold_154-1491911889:522622..522811Clytia hemisphaericaexon
TCONS_00049279-exon-scaffold_154-1491911889:521349..521875TCONS_00049279-exon-scaffold_154-1491911889:521349..521875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:521349..526911 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0294652	0	0	0.115178	0.0361388	0	0.00348978	0.0401387	0.006614	0.0650165	0	0.00521903	0.0345124	0.300161	0.000793694	0	3.40553	0.00152089	0	0.0185941	2.71609	3.3604	52.994	72.1534	1.39133e-05	5.78189e-05	0.531159	0.119573	0.00676951	4.97808e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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