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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049309 ID=TCONS_00049309|Name=TCONS_00049309|organism=Clytia hemisphaerica|type=transcript|length=795bp
ATCGATCAGTAGCAGTAAGAAGCAGTggaataaagaagaaaatcaaagag
AAAATACACGGAGCAACAAACACCAATCAAAAGCAGAATGAAGTTGAACA
TGATATTAACCATTGCTTTTTCATGCATTGTCTTTGAAAACGTTTTATCG
GCAGTAACAGtTGCAAACCCTGCTTACATTGGTACATTTGAAAACCTCCA
ATACGTCAAAGGAGCTGGAAAGAATGATTGGCATTACGTCACAATCACAT
ACAGTGCTGCTTCCAAAAGCTACTCATGGTCTAATCGAGCAGGAATCTCA
TGGTCATTGTATCCTACAAGCAAGTCTGGTGAATTGAGAGTTGGACAAGA
TTGTCCCTATTACTCAACGGGACACACAATTGCAAATTTTACTGCTGACG
GAGTTTATGGACCATGGAACGAACTGTATTCACGAAAAGTTGGAAATCCA
TTGTTATGTGGAGACTTTGAGAATCACAAATACGACCTCAAAGGCAAAAA
CGATTGGCATTACGTTCACATTGATTACGATGAATCCACTCAAAAATACA
CATGGTCCAACAGAGCCGGAGTCAAATGGTCCATGTATCAGACTAATGTT
TTCAACAAGTTGAGAGTTGGAGAAGATTGTCCTTATCTCAAAAACGGATA
CACAGAAGCTATTTTCACTGACAATGGCATTTATGGACCTCATAAGGAAT
TTTATGACAAGAaatagatttatttaaaaaagaactgtttaaaaaaacat
tatttgtaaaAAGGCTCTTTCAGCGGAACACTTCTACCCTATCTg Run BLAST on NCBI protein sequence of TCONS_00049309-protein >TCONS_00049309-protein ID=TCONS_00049309-protein|Name=TCONS_00049309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MKLNMILTIAFSCIVFENVLSAVTVANPAYIGTFENLQYVKGAGKNDWHY
VTITYSAASKSYSWSNRAGISWSLYPTSKSGELRVGQDCPYYSTGHTIAN
FTADGVYGPWNELYSRKVGNPLLCGDFENHKYDLKGKNDWHYVHIDYDES
TQKYTWSNRAGVKWSMYQTNVFNKLRVGEDCPYLKNGYTEAIFTDNGIYG
PHKEFYDKK Run BLAST on NCBI transcript from alignment at scaffold_154:747751..749143- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049309 ID=TCONS_00049309|Name=TCONS_00049309|organism=Clytia hemisphaerica|type=transcript|length=1393bp|location=Sequence derived from alignment at scaffold_154:747751..749143- (Clytia hemisphaerica)
ATCGATCAGTAGCAGTAAGAAGCAGTGGAATAAAGAAGAAAATCAAAGAG
AAAATACACGGAGCAACAAACACCAATCAAAAGCAGAATGAAGTTGAACA
TGATATTAACCATTGCTTTTTCATGCATTGTCTTTGAAAACGTTTTATCG
GCAGTAACAGGTAATAGTCATTTTCAATTTCACTTCATGTTCTGATTTGT
TAAAAATTAAAAATAAAGTACAATGAATGAAAAATGAATTTTACCCTTTT
GCGCTAGAAACTTCACTTTGGTACAGCTACAGAGGTACTTTAAACCCTCC
CGATGAAGTTCATTTTTTCTTCTTCATCTTCATTTTCTAAAGATTTAGAA
TTATTTTTCTAAACAATCCTAGTGCTCTGAATCATCTTTTCAACAATATA
TAATATGTTACATTTGAAATATTGGTTAAAAAATATGGTAAGTAAAACAA
AAAATGGACTTTGGGTTTATGTTTATGGTCGAATCTTAGAAATCAAAGCA
TTCATCCGCTAATTTATTTTTATTTTCACAGTTGCAAACCCTGCTTACAT
TGGTACATTTGAAAACCTCCAATACGTCAAAGGAGCTGGAAAGAATGATT
GGCATTACGTCACAATCACATACAGTGCTGCTTCCAAAAGCTACTCATGG
TCTAATCGAGCAGGAATCTCATGGTCATTGTATCCTACAAGCAAGTCTGG
TGAATTGAGAGTTGGACAAGATTGTCCCTATTACTCAACGGGACACACAA
TTGCAAATTTTACTGCTGACGGAGTTTATGGACCATGGAACGAACTGTAT
TCACGAAAAGGTAACAACTTTAAATTTACTTGTAAATGGAAAAAAATCAT
CTTCAAGAATTTTAGCTTATTCTTGCTCAAATCTAATCAAGGGCTTTGAT
CATAATTAGAATTCGCGAAAAAGTAACGATTTTAGTTTAGTTGAAAATGA
AAAGTTACAATTCAGCTTAACTTGAAATTCATCCATAGTAAATAGATTAA
GAAATATCTACATTATAGTTTGTTTTTCACTTTATAGTTGGAAATCCATT
GTTATGTGGAGACTTTGAGAATCACAAATACGACCTCAAAGGCAAAAACG
ATTGGCATTACGTTCACATTGATTACGATGAATCCACTCAAAAATACACA
TGGTCCAACAGAGCCGGAGTCAAATGGTCCATGTATCAGACTAATGTTTT
CAACAAGTTGAGAGTTGGAGAAGATTGTCCTTATCTCAAAAACGGATACA
CAGAAGCTATTTTCACTGACAATGGCATTTATGGACCTCATAAGGAATTT
TATGACAAGAAATAGATTTATTTAAAAAAGAACTGTTTAAAAAAACATTA
TTTGTAAAAAGGCTCTTTCAGCGGAACACTTCTACCCTATCTG Coding sequence (CDS) from alignment at scaffold_154:747751..749143- >TCONS_00049309 ID=TCONS_00049309|Name=TCONS_00049309|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_154:747751..749143- (Clytia hemisphaerica)
TTGGAAATCCATTGTTATGTGGAGACTTTGAGAATCACAAATACGACCTC
AAAGGCAAAAACGATTGGCATTACGTTCACATTGATTACGATGAATCCAC
TCAAAAATACACATGGTCCAACAGAGCCGGAGTCAAATGGTCCATGTATC
AGACTAATGTTTTCAACAAGTTGAGAGTTGGAGAAGATTGTCCTTATCTC
AAAAACGGATACACAGAAGCTATTTTCACTGACAATGGCATTTATGGACC
TCATAAGGAATTTTATGACAAGAAATAGTTGCAAACCCTGCTTACATTGG
TACATTTGAAAACCTCCAATACGTCAAAGGAGCTGGAAAGAATGATTGGC
ATTACGTCACAATCACATACAGTGCTGCTTCCAAAAGCTACTCATGGTCT
AATCGAGCAGGAATCTCATGGTCATTGTATCCTACAAGCAAGTCTGGTGA
ATTGAGAGTTGGACAAGATTGTCCCTATTACTCAACGGGACACACAATTG
CAAATTTTACTGCTGACGGAGTTTATGGACCATGGAACGAACTGTATTCA
CGAAAAGATGAAGTTGAACATGATATTAACCATTGCTTTTTCATGCATTG
TCTTTGAAAACGTTTTATCGGCAGTAACAGTTGGAAATCCATTGTTATGT
GGAGACTTTGAGAATCACAAATACGACCTCAAAGGCAAAAACGATTGGCA
TTACGTTCACATTGATTACGATGAATCCACTCAAAAATACACATGGTCCA
ACAGAGCCGGAGTCAAATGGTCCATGTATCAGACTAATGTTTTCAACAAG
TTGAGAGTTGGAGAAGATTGTCCTTATCTCAAAAACGGATACACAGAAGC
TATTTTCACTGACAATGGCATTTATGGACCTCATAAGGAATTTTATGACA
AGAAATAGTTGCAAACCCTGCTTACATTGGTACATTTGAAAACCTCCAAT
ACGTCAAAGGAGCTGGAAAGAATGATTGGCATTACGTCACAATCACATAC
AGTGCTGCTTCCAAAAGCTACTCATGGTCTAATCGAGCAGGAATCTCATG
GTCATTGTATCCTACAAGCAAGTCTGGTGAATTGAGAGTTGGACAAGATT
GTCCCTATTACTCAACGGGACACACAATTGCAAATTTTACTGCTGACGGA
GTTTATGGACCATGGAACGAACTGTATTCACGAAAAGATGAAGTTGAACA
TGATATTAACCATTGCTTTTTCATGCATTGTCTTTGAAAACGTTTTATCG
GCAGTAACAGTTGGAAATCCATTGTTATGTGGAGACTTTGAGAATCACAA
ATACGACCTCAAAGGCAAAAACGATTGGCATTACGTTCACATTGATTACG
ATGAATCCACTCAAAAATACACATGGTCCAACAGAGCCGGAGTCAAATGG
TCCATGTATCAGACTAATGTTTTCAACAAGTTGAGAGTTGGAGAAGATTG
TCCTTATCTCAAAAACGGATACACAGAAGCTATTTTCACTGACAATGGCA
TTTATGGACCTCATAAGGAATTTTATGACAAGAAATAGTTGCAAACCCTG
CTTACATTGGTACATTTGAAAACCTCCAATACGTCAAAGGAGCTGGAAAG
AATGATTGGCATTACGTCACAATCACATACAGTGCTGCTTCCAAAAGCTA
CTCATGGTCTAATCGAGCAGGAATCTCATGGTCATTGTATCCTACAAGCA
AGTCTGGTGAATTGAGAGTTGGACAAGATTGTCCCTATTACTCAACGGGA
CACACAATTGCAAATTTTACTGCTGACGGAGTTTATGGACCATGGAACGA
ACTGTATTCACGAAAAGATGAAGTTGAACATGATATTAACCATTGCTTTT
TCATGCATTGTCTTTGAAAACGTTTTATCGGCAGTAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049309-exon-scaffold_154-1575043694:748984..749143 | TCONS_00049309-exon-scaffold_154-1575043694:748984..749143 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1575043694:748334..748612 | TCONS_00049309-exon-scaffold_154-1575043694:748334..748612 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1575043694:747751..748106 | TCONS_00049309-exon-scaffold_154-1575043694:747751..748106 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1510915933:748984..749143 | TCONS_00049309-exon-scaffold_154-1510915933:748984..749143 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1510915933:748334..748612 | TCONS_00049309-exon-scaffold_154-1510915933:748334..748612 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1510915933:747751..748106 | TCONS_00049309-exon-scaffold_154-1510915933:747751..748106 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1491911889:748984..749143 | TCONS_00049309-exon-scaffold_154-1491911889:748984..749143 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1491911889:748334..748612 | TCONS_00049309-exon-scaffold_154-1491911889:748334..748612 | Clytia hemisphaerica | exon |
| TCONS_00049309-exon-scaffold_154-1491911889:747751..748106 | TCONS_00049309-exon-scaffold_154-1491911889:747751..748106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:747751..749143 - |
Blast
The following BLAST results are available for this feature:
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