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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049312 ID=TCONS_00049312|Name=TCONS_00049312|organism=Clytia hemisphaerica|type=transcript|length=1963bp
gaaaattaaaattaaaattatggAAATATTGTTGCGAAATAATAAAAGAT
TATGTTCTTGCAGAAGCACTTTGCAGAGATGCTAGATTTTCGTTTTGAGT
CAATAGTTGTTGGAGAACCTTTTTCGTTATAACATACAATTGATCAAAGA
TTTAACATACCATAGGATTTTACAGCATTTAAGAAGaaataaaaacaaag
ttatacaaacaaaacaaacaatacAAAGAATGAAAGTAAACAATGAGTTC
CTGAACATTCGTTTTTAGCAAGCTGTGGTTTTTATAATCAAGGAAGTCAT
GTAACAGTTGGTTGTTTTCATGGTTCACTGGATTCATGGATGATCAATTT
GTATTTAGGAATTGGTTTGCTGCAAGGGATGTGATCTACTAtagtaaata
aatgaataatGGAGAGTGCTGAAAACGTATTAACAAACGTCGATCAAAGT
GTAAATTCAGTTTTAAGGAGTTTACTGCTTGCTGATTCCACTAAGAAACG
aacagaaaatcaaaaaatttttaatgggaaaactaattcaaattcattga
ataaaaaaattgttggaAAAGTCAGTGATGTTGGCAATAATGCAACCTCT
AACAACGTTTCAAAATATGGTCCAGTCTTTCAATTAATAGATGGTAAATA
TGTTCAAATTGGTGAAACATGTAAGGCATGTGGTGCATCATTTACAACTC
GACATGAGCTGTCTGATCATCAAAACAATGGTATAAAATATTACTGTGGG
GAATGTAAACTATTGTTTAGATGtaaaaaaactgttaaaatgcATCTCCA
AACACACATTGCAGATTCAGGTGTTAGTCCCCAGGAGCCATCAAAGCCAA
CAAACtctaaacttcaaaacaaaCCAGATGATGATGAGGACGTTCAATTT
CAATGCAAGGAATGTGGGAAATTTTATACTTCTGAAAGTACCATGAGACG
CCATTGTAAAACTCACTCAAAGCTCATTACTTGTGACAAATGCAATAAAG
AATTTTCAATGgaagattttcaaattcacaTCAAAAGTTCCAAATGTAGT
AagagaaaaactgtttttaaatGCAAGGAATgcaagaaaaagtttttgaa
attaagCACTTTGAATACTCATATAAAAACACACACCAAGCCTTATAGCT
GCAAGGACTGTggtaaaagtttttcaaagaagaGAGCTATGGAGCATCAC
CAAAGCATTAGAAAATGTGTCTTAGAATGTAAGGATTGTGGTAAATCATT
TTCAAGTAGAATCGATTTAAGAAAGCATTTAAATActcataaaaaatttg
aatgcaCAGAATGTGGAAAGTTGTATGCTTCTAAGAATGCATTGGTGACT
CATGAAAATATTCACAAAGGACTATCCTTTGTTTGTGAAGTTTGTGGAAA
GTCATTCGCAACACTCAATTATATGAGAAGccacaaaaaaaatcatgagC
CTTTAATGTTCAACTgcgaagaatgtggtaaatctttttcaataaagaGT
AAATTGCAGCGtcatttaaaaatacacgaagGGCTCAAACCTTTTCAATG
TGAATTATGCGGGAAAGGTTTTGCAGAAAAGTCAGGTCTTCAAGGACACA
TGGTTTATCACGTGGATGCTAGGCTTTTTGAATGTGAAACCTGTGGCAAA
GGCTTTAAGACCAAACATAACCTTTCGTGGCATAATAAAACTGTAAAGTG
CAAGAAGGATTAGGACTGTGATAAGCTAATTGGATGTGTATGTGAACTCT
TAAatctttatttactttttcaaaatgatgtAGGTATTTTTGTCTCTATA
TGAAGTTTTATCTTGTAAATGGTCGGATATTAAATTATCATCTTACGCTC
ACTTAGACTCCTATGAAACTCAAAGGAGAATCAATCTGTTCCATTCTAAT
CCATACAGGGAGTTGGGCAAACCTTTTCAAGCAAAACAATAATCCTTGAA
AATTTGTGAATAC Run BLAST on NCBI protein sequence of TCONS_00049312-protein >TCONS_00049312-protein ID=TCONS_00049312-protein|Name=TCONS_00049312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MESAENVLTNVDQSVNSVLRSLLLADSTKKRTENQKIFNGKTNSNSLNKK
IVGKVSDVGNNATSNNVSKYGPVFQLIDGKYVQIGETCKACGASFTTRHE
LSDHQNNGIKYYCGECKLLFRCKKTVKMHLQTHIADSGVSPQEPSKPTNS
KLQNKPDDDEDVQFQCKECGKFYTSESTMRRHCKTHSKLITCDKCNKEFS
MEDFQIHIKSSKCSKRKTVFKCKECKKKFLKLSTLNTHIKTHTKPYSCKD
CGKSFSKKRAMEHHQSIRKCVLECKDCGKSFSSRIDLRKHLNTHKKFECT
ECGKLYASKNALVTHENIHKGLSFVCEVCGKSFATLNYMRSHKKNHEPLM
FNCEECGKSFSIKSKLQRHLKIHEGLKPFQCELCGKGFAEKSGLQGHMVY
HVDARLFECETCGKGFKTKHNLSWHNKTVKCKKD Run BLAST on NCBI transcript from alignment at scaffold_154:819752..829993- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049312 ID=TCONS_00049312|Name=TCONS_00049312|organism=Clytia hemisphaerica|type=transcript|length=10242bp|location=Sequence derived from alignment at scaffold_154:819752..829993- (Clytia hemisphaerica)
GAAAATTAAAATTAAAATTATGGAAATATTGTTGCGAAATAATAAAAGAT
TATGTTCTTGCAGAAGCACTTTGCAGAGATGCTAGATTTTCGTTTTGAGT
CAATAGTTGTTGGAGAACCTTTTTCGTTATAACATACAATTGATCAAAGA
TTTAACATACCATAGGATTTTACAGCATTTAAGAAGGTATTTACTTTTTA
CACGTATACTTTATTTTTATACCCTAAATGCAAGGAATGTGGTTAACCGC
TTTTCAATAAAATAGGTGGTTGAAATTTCCATTTTCCAAAGGCAGTGGTA
ATCAAAGTGATGATGAATGAACTTTATCAAGTTTGTATGTTTCAGGTTAG
TGAAAATAATAGAAACCCTTGGCCTTATCAATACGGTTCAACAATGTCAA
TGCTAAAGATAAAACTGGTGTCTGTTAATAACGAGTTGGCAATCCTTCAT
GATAATAATTTGAATAAGACCCTAGCAGAAGACCGAATAGAACAGTGCTC
TATTGAGGAAATAAAGTCTAATCCATTGAACAAAATAGAAGATGAAAATA
ATAATAGTGCAACAAACATTGAAATGTCTAACCAAAATCAAAATAATACC
TTATGTGCGATATGTGGACAATATTTAAATCTCTTGTCAAAGAATCCAGA
GCAGCTATGTAAATGTAAAGAATGTGGTGCGTTATTTACAACTCAGAATG
CTCTTGACATTCATCAAAACAATGGTATAAAGTATCAATGTGGAACCTGT
CGCAAAATGTTTTCATGCAAAATCACTGTGCAAGAAAAACTGCAAACCAG
TCCACAAAAAAAGGTGAAGCCTCTTAAAATATCTCGTAATCGTGCAAAGT
TAAAGGTGGCATCTACTCAAAGGTTGCCTGAACTTAATGCAGAAAACCAA
TGTAAGGATTGCGGTAAGTCTTTTTCATCTGAGAGTACATTGAAACGCCA
TTTGAAAGCTCACTCTAAAATTATGATTTGTGACAGATGTGGTAAAGGAT
TTTCTACTGAAGATTTTTTGGTGCATAACAAAAGCTCAAGATGTAGTAAA
AAAGAAACTGTTTTTAAATGCAAGGAATGTAAGAAGATATTTTCACAAAA
AGGGACTTTAAATATGCACATGAATACCCATACAAAGCCATTTAGCTGTA
ATGAATGTGGTAAGGCTTTTTCATTGAAGAGAAGTTTGGAACAACATCAA
AGCTCCCGTAAATGTGCCTTGGAATGCATTGAATGTCAGAGATCTTTTTC
TAACAAAGACGATTTAAAAAAGCATATAAGAAGCCATAACAGTTTTGAAT
GTAAGGAGTGTGGAAAGTCATTTACAACAAAGACATTATTATGGAAGCAT
GAACAAATTCATATAGAAATTAAAGCTTATCATTGTGACACTTGCGGAAA
GTCATTCTCAACACCGGGTTATCTGAGGAGCCATCAAAAAGTTCATGAGC
ATCCAATGTTTAATTGTGAGGAGTGTGGTAAATCCTTCCCATTTAAGAGA
AGTTTAGAGCGACATCTTAATACACATAAAGGAATCAAGCCCTTTAAGTG
TAATGTTTGTGGGAAGTGTTTTTCGCAGAAAAATAATTTAGTTACTCATA
TGAAGTGTCATGCTGAAGAAAGACCTTTCCAATGTCAAAAATGTGGTAAA
GGTTTCAAAATGAAGCATAATCTTAAGGAGCATAATGACAATGTAAAATG
CACAAATTAATAAGATCACTTTTTGCTGGTTAGGTGTGTTTGAATTTTTT
TATACTTAATGTTTTTACAATGAAGTGAATACAGTCGCTCTCATGTTGTC
CACCGGTTCCACATGGTCCCGTAGCTCAATGGTAGAGCAATAATGCCCGC
GAATGGCATGATTGTTTTAGTCTCGCCGGATCCGTTGGTTTTCCAACGGT
TCTGGTGGCTGGTCAGAAGACAACATGAGAGCGACTGTATTCACTTCATT
GTAATACATAAGGGCAAAATTCATGACTTAAGGTTTTTGTATTGAATATT
TTTTTAGTTTTTTTATGCAGTATATCAAAGTTCACACACAGCTTTAGTAC
AAGTTTTAAAATATCAAATCACTAGTCTCTTTGCCAAAATATTAACTTTT
GGGCGTGCAAACTTTTATGAGCAAGAACTTTTGTGAAATTTGGCGTTTTT
TACAAAATGCTTCCAAAAATGTTTTCAAAAATAAAAAACTTACAAAATGA
CTATATGAAGATGCTGCGACACTAAGTAATCTATATTCTAGTATTATTGT
GATAAATTTCTTGTGTTTTAGTTGTATTTATNCTTACACAATGACTATAT
GAAGATGCTGCGACACTAAGTAATCTATATTCTAGTATTATTGTGATAAA
TTTCTTGTGTTTTAGTTGTATCTATATAGGGCTGTAGATAAGCGTCAGTC
AATGTCCGACTGAAAAGCCATTTGAACAACTGAAAAATCTTTTGTGTCGT
TCATTATGTTCGTATGAAAAGATGAATAAAACCATTAACTTCATTTGTTC
AATCTTCTATACATTCCTGCCTCCTGCTCTACAATATCAATTGATTTATT
CGTAACTTTTAAGAGTGTTTTTAAATCACTTTTTTATTGAATCGCTTTTT
TCGTTACTTTTAAGAGTGGTTCTTAGATCACTTTTATCAAACCACTTTCT
CTATCACTGTAACGAGTTGATCTAAGTTTTCTTTTATCTATCAGCTTTCT
GTGTAACTTTCAAGAGCTAGCTTCTTACTGAGGTTAGAAAAATATCCTGC
TAGCTGAAAAATTATGATGACTAATGAATGACCGAGAGAATTTTGAGAGA
ATTTTGAGTTTCAATGTCCGAGTGACCAAAAGAGCTTTATTTTTTGCAGC
CCTGTATGATATAAATATTATTTGCTATTCATACTTCCAGGAGGGGGTTT
TAAAAGTACATAATTTGAACAAGGCCTACATAATAACTAAATAATAATAA
TTCTCTTTCTATACTTCAGGATTGTTTGAAGAATTTATTTTGTTTTTATT
GAAATGCAGAAAGTTTTTGTTTACAAGAAGACATTTTTTGTTGTCAAAAT
CTTGAAAGTTGATGAAATGTTTCCATTTTTATACATTAGGGATTTGCTTC
ATATTGGTTCTGGTTTCAATTTATTAAAATAAGTTATATTTTTCTTTATT
CATAGGTTAAACTAAAGCAAAACTTTATAATCCTTCACGATTTTTTGAAT
TGATGAAGCATAATGATTTGACTACAATAAACTTGATTGTTTGATCAATT
GATGATTTAAAAAATCAGCCATAGATAATGTGTTAACAAACATCAGTATA
GGTGTTAATTCTGTCTCAATGAATATACCAACTCCTGATTCCAATAATGC
ACTAGCTGTAAATCAAGCAGTGGGAGATTCTGGCAGAAATGACATTTCAA
GTTTGTTGAATATAAAAGAAATGGAAAGTGTTGATAATGGCAATAACATA
ACGAATAAGAATCTGACAAGCAATGGCCCAATCTTTCGATTATTGGAAGG
GAAATATGTTCAAGTTATTCCTGGGAATCAGATACAGAATGTCTATCAAT
TCATAAAAAGACCTAATGCAAAAGAATGTCTTGAGTGTAAGGAGTGTGGT
ACATCATTTACAACTCAGAATGAGCTGTCTGATCATCAAAACAATGGTAT
AAAGTACTACTGTGGGCCTTGTAAACGATTTTTTGCATGTAAAGATTCAG
TTAAAACTCACCTGCAAACTCACATTGTAGGCTCTAGCCAACAGAAGTTA
ATAAAAGTTACTTTACCTTGTCAAAATGAACCGAAAGACAATGAGGATAG
TCAATTTCAATGTAAGGAATGTGGGAAATCTTTTGTATCAGAAAGTACAT
TGAAACGTCATCTGAAAACTCACTCGAAGCTTATTACTTGTGACAAATGC
AGTAAACAATTTACAATGTTTGATTTTTTTATTCACAATAAAAGTTCGGA
ATGTATTAAGAGGAAAACTGTTTTTAAATGCAAAGAATGCAAGAAAAAGT
TTCCACATTTAAGAGCTTTAAATATTCATATTAATACCCACACAAAGCCT
TTTAGCTGTAATGAATGTGGTAAGCACTTTTCACAGAAGAATGCTATGGA
GCATCATCAAAGCACTCGAAAATGCTCCTTTGATTGTAAGGAATGTGAGA
AATCTTTTTCGAACAAAAATGAATTTGGAAAGCATAAAAGAGCTCATAAA
AATTTTGAATGCAAAGATTGTGGAAAATTGTTTGCTTTTAAAAATGAATT
GGTAGTTCATGGAAATATTCATACAGGAGTGAGGCCTTATATTTGTGAAG
TTTGTGAAAAGACCTTTTCACGACCAGATACTCTGTTCAACCATCGAAAA
ATTCACCAGCCAAGTAAGTGGAATTGCGAGGATTGTGGTAAATGTTTTAC
AATAAAGCGTTCTTTGGAGCGACATCTGTCAGCACACACAGGCATCAAAC
CTTTCAAATGTGACTTATGTGGGAAAGGTTTTACAGAAAAGTCAAGTCTT
CAAACCCACCTGATCTATCATGGAGATGCTAGGCCTTTTGAATGTGAAAC
CTGTGGCAAAGGCTTTAAGACGAAACATAACCTTTTGTGGCATAATAAAA
CTGTCCAATGTAGCAAAGATTGACATTAAAGTGCTTTTTAATATAATTAT
AGCTTCTTCCTTTAAATCCAATTTACAAATTTTAACGTGCAATTTTTTAG
CATACCCATGCGTATTTTCTATATCCCAGTTATGACTCTTGTCTTGAGTT
ACAGTACCTGTCTGAATGTCCGAGCATTTGTATTGAGCTATTTCCAACAA
TTTGTTTTTACTATTGTTTTTTTTGTCGTATATATTTTTTTCTTTGAATC
GTGTTTGCTTGCTTCAGTTGAAAATCTTTTTATTTCAGACAGTTTGATGT
CGTTGTCAACATGACCAAAGGTTCAATCTCAAAATAAGCGTCTTGGAAAT
TTGGAAATCTTGCAATTCTGTTCTGCCTTTGAGATTGATCTTTTTGTCGT
ATGAAAACATTGACTATTCCTCTACATGAAAAAAGGTCAATCTCAATCTC
AAAGATGACCACCACAGTAAAACTTTAAATTTTGTAAGGTACTAATTTTG
AGATTTAAAACCTTTAGTGATGTGAACGACGATATAGGTCATCATCAACA
GATTCGCATTGCTTAAATGTCATTATAAATTGACATTGTAAATGTCAAAC
CTTGAAGACCAAATTTCCTTATCCACTTGAAACTTGAGTAACCTAGGTAT
ACCTAAAATTTCCAGAAATTTCTTTACTTTTCAAGAGGGTTTAGACCAGG
CATTAGTTTAGGATTTTTATATTCCTTATTTCTGCTTTATTTTGTTATTT
TGTTACTGTTTTATTAAAAGATTTAATTTTGTTATAATGTGCATTAAAAG
ATATACTGTTCTGAATAAAAAGTTCTGAGTAATTTTGTTCGTTAAAAGTC
ACAGGTAATTATGTTAAATGACATTTACTTGGTTTCAGGTTATCCTCTTG
GGAAAGTTTATTGAGATTTGAAATAAAGCATCCCAATCCGTAGTTTCTAT
CACTTTCTTTTATCATGTAGGATGATTTAAATGGATGTATAGTAACCTCT
GTTTATTTATTTTCAGAAATAAAAACAAAGTTATACAAACAAAACAAACA
ATACAAAGAATGAAAGTAAACAATGAGTTCCTGAACATTCGTTTTTAGCA
AGCTGTGGTTTTTATAATCAAGGAAGTCATGTAACAGTTGGTTGTTTTCA
TGGTTCACTGGATTCATGGATGATCAATTTGTATTTAGGAATTGGTTTGC
TGCAAGGGATGTGGTAAGCCTTTTCCTAAATAAACCTTTAATTCTAGCTG
TAATTTTATAGAATACACGCTTTTTCAAGCAGGTTCTATTTAAGATGAAA
CAAATTACATCATTTTGTTGTTATGGGGCTCTGATACGATTAAAATTACA
ATCTTCTTCTTTAGATCTACTATAGTAAATAAATGAATAATGGAGAGTGC
TGAAAACGTATTAACAAACGTCGATCAAAGTGTAAATTCAGTTTTAAGGA
GTTTACTGCTTGCTGATTCCACTAAGAAACGAACAGAAAATCAAAAAATT
TTTAATGGGAAAACTAATTCAAATTCATTGAATAAAAAAATTGTTGGAAA
AGTCAGTGATGTTGGCAATAATGCAACCTCTAACAACGTTTCAAAATATG
GTCCAGTCTTTCAATTAATAGATGGTAAATATGTTCAAATTGGTGAAACA
TGTAAGGCATGTGGTGCATCATTTACAACTCGACATGAGCTGTCTGATCA
TCAAAACAATGGTATAAAATATTACTGTGGGGAATGTAAACTATTGTTTA
GATGTAAAAAAACTGTTAAAATGCATCTCCAAACACACATTGCAGATTCA
GGTGTTAGTCCCCAGGAGCCATCAAAGCCAACAAACTCTAAACTTCAAAA
CAAACCAGATGATGATGAGGACGTTCAATTTCAATGCAAGGAATGTGGGA
AATTTTATACTTCTGAAAGTACCATGAGACGCCATTGTAAAACTCACTCA
AAGCTCATTACTTGTGACAAATGCAATAAAGAATTTTCAATGGAAGATTT
TCAAATTCACATCAAAAGTTCCAAATGTAGTAAGAGAAAAACTGTTTTTA
AATGCAAGGAATGCAAGAAAAAGTTTTTGAAATTAAGCACTTTGAATACT
CATATAAAAACACACACCAAGCCTTATAGCTGCAAGGACTGTGGTAAAAG
TTTTTCAAAGAAGAGAGCTATGGAGCATCACCAAAGCATTAGAAAATGTG
TCTTAGAATGTAAGGATTGTGGTAAATCATTTTCAAGTAGAATCGATTTA
AGAAAGCATTTAAATACTCATAAAAAATTTGAATGCACAGAATGTGGAAA
GTTGTATGCTTCTAAGAATGCATTGGTGACTCATGAAAATATTCACAAAG
GACTATCCTTTGTTTGTGAAGTTTGTGGAAAGTCATTCGCAACACTCAAT
TATATGAGAAGCCACAAAAAAAATCATGAGCCTTTAATGTTCAACTGCGA
AGAATGTGGTAAATCTTTTTCAATAAAGAGTAAATTGCAGCGTCATTTAA
AAATACACGAAGGGCTCAAACCTTTTCAATGTGAATTATGCGGGAAAGGT
TTTGTAGAAAAGTGGTGTCTTCAAGGACACATGGTTTATCACGGGGATGC
TAGGCCTTTTGAATGTGAAACCTGTGGCAAAGGCTTTAAGACGAAAACTA
ACCTTGCGTGGCATAATAAAACTGTCCAATGTAGTAAAGATTGACATTAA
AGTACTTTTTGTGTGCAGGACCATTTTAAACTTTTTATAAAATTATATCG
TATTGATTAAGATACTGTTGCTCATTTTGGATATTTTTTTAACTGATGCA
CTCTTACATTTGTTGTGGTACCTTAAGGGTACTAATTTTCCCAGGAACTA
TTTTTCGCAATTTTTCGGCAAAAGCAAAACCGCAAACATTAGAACCCGCA
AAATACAAATTTAGCCATTTTTCATTAAAAAATTTGAAAAATCCCTGGGA
AAAATAGGTCAAAACTGCAGAAATTAGTTCCCTTTAGGTATATAAAATCA
AATTAGACTATCATAAAACTGCATTCCAAACCAACTAATTTATATTTTTG
TTTAAATAATAATAATAGTATACAAAAGTGACGTTTTTGTTCATTCCTAC
TTTAAGATAACTTGATATTTTTTGGACCTACCTTGAGGTTTTCCTATAAA
TTAACCGTCGTTTGTTCGTTCGTTCGTTTGTTTGTTCATTCGTTGGTTTC
CAGCTTTTCTCGAGATGGGCTGATTTTTTTATGATTTTTTGCACAATGAT
GCATTAATTACCAAATTACTCAAATTTTAGATTCCAACCCCCTCCCTTAA
TACCACCCCAATGGGCATGGGGGATAATCAGTGATGAAAACAAACAATGA
CTTTTAATAAATTGTCACTATTTGTGTTCTGAATGATTGTTTTAACGGTC
CATAAAAGTATTGCTTATTTCTTTAATTTTTTCCTTGAAGCACTGAAAGA
CTAGATCTTACTACCATTGAACTTGTGTAAATTGATTTCCTGATAGGAAA
AGTTATTCAGTTATATTCAGCTGTTTATAACTTTAATCCTATTTTTATCA
GGGGTTGCTCTGGCGTTTGTTTGCTGATAAATTACTGAAGACATTTTTGA
CAATCTGATGGATCAGGTTTATGACTTTCTTGTCCAGGTATTTCATATAA
TAATTTTTGATACAGTTTCCCATTTAACTAGGTATCAATAGGATGTCTCA
GAAAATGATAGTTTTTTTCAAAAAATGATGATGTCATTATGGCAAAAGAC
ACAAACAAAGAAAAATATTTTGATGCAATGAATGTGGAACATCTTTTTCC
AATGAAACATTTCACTTTATAAAATACACACTAGTTCTAGTCAAGATGAA
ATAATTATACCATTATACTGCTTGGCTGTTATATGGTAGTTATTATGAAA
TCACTTTTCTGCTTCTTTTCTTTCTATAGGTAAACCACAGTGAAATTTAT
AAGTGAAATTTGTTATTAAAATAATGGAAAGTGTCGATAACGTATTAACA
AATATTAATCAAAGTGTAAATTCGGTTTTGACGAATTTGCAGGATGTCGA
TTCCAGTAAAGTACAATATGAAAACGGATTAGCTCATAATTGGACGAATT
CAAATTCGTTGAATAAAAATATTGCAGGAAAAGTTATTAATGGTAAAGTA
ACTTGTTATGACTATGGTCCAATTTTTCAATTAATAGATGGGAAATATGT
TCNACAAGTTAATGATGGTAAAGTAACTTGTTATGACTATGGTCCAATTT
TTCAATTAAAAGGTGGGAAATATGTTCAAATTGGTGAAACAAAAAATCAG
TTTGTAAAAGGACCTGGTGGAACACTGTTAAGAGTAAACACATTAGGGTG
GTTTGTATGTAAGGAATGCGGTGCATCATTTACAACTCCACGAGAGCTGA
CTGACCATCAAAACAATGGTATGAAATATTACTGTGGAGAATGTAAATTA
TTCTTTACATGTAGAAATTCAGTAACAAATCATCTACAAACACACGCTGC
AGGTTTAAATCCCCAGAAAGTAATAAAACATACTTTTATACATTATCAAA
GCAAACCCAAAGATGACATTAAATTTCAATGCAAGGAATGTGGGAAATCT
TTCGCATCTAAGAGTACATTAAAACGCCATCATCGTGTTAAATCAAAAGA
TAAACAAACCATGTCTAAATTTGATGCAGAACAATTCGCTGTATGGCAAT
GTAAGGTATGTGCAAAATCATTTTCATCTGAATGTTTATTGGACCAACAT
TCGAAAACTCACTTAAATGAGGTTTCTGGAGAATTGAAAAAAGAAAAAAC
TTCTGTATGTCACCGGAAGTACCCTGAAATGAAAGAGGAAAACTACAATG
GCTTTGAATGTAAGGATTGTGGGAAATCTTTTGCATCAGAAAGTACATTG
ACACGTCATTTGAAAACTCACTCAAAAGAAAGGAAAAGCTATTTGAAAAA
GTATGAAGAAACTCATCAAACTTTTGAATGTCAGGAATGTGGAAAGTTAT
TTACATCTCAAAAATCTTTAGTGATCCATGAAAATATTCATAAAGGAGTG
AGACCCTATATTTGTGATACATGTGGAAAGTCGTTTGCAACACTTAGTTA
CATGAGGAGCCATAGAAGGGTTCACGGGCCTCTAATGTTTAATTGTGAGG
AATGTGGTAAGTGTTTTTCAATAAAGAGTAAGTTGCAGCGTCATTTAAAA
ATACACAAAGAAGTCAAACCCTTTCAATGTCAATTATGTGAGAAAGGTTT
TGCAGAAAAGTCAGGTCTTCAAGGACACATGGTTTATCACGTGGATGCTA
GGCTTTTTGAATGTGAAACCTGTGGCAAAGGCTTTAAGACCAAACATAAC
CTTTCGTGGCATAATAAAACTGTAAAGTGCAAGAAGGATTAGGACTGTGA
TAAGCTAATTGGATGTGTATGTGAACTCTTAAATCTTTATTTACTTTTTC
AAAATGATGTAGGTATTTTTGTCTCTATATGAAGTTTTATCTTGTAAATG
GTCGGATATTAAATTATCATCTTACGCTCACTTAGACTCCTATGAAACTC
AAAGGAGAATCAATCTGTTCCATTCTAATCCATACAGGGAGTTGGGCAAA
CCTTTTCAAGCAAAACAATAATCCTTGAAAATTTGTGAATAC Coding sequence (CDS) from alignment at scaffold_154:819752..829993- >TCONS_00049312 ID=TCONS_00049312|Name=TCONS_00049312|organism=Clytia hemisphaerica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_154:819752..829993- (Clytia hemisphaerica)
GTTTTGCAGAAAAGTCAGGTCTTCAAGGACACATGGTTTATCACGTGGAT
GCTAGGCTTTTTGAATGTGAAACCTGTGGCAAAGGCTTTAAGACCAAACA
TAACCTTTCGTGGCATAATAAAACTGTAAAGTGCAAGAAGGATTAGATGG
AGAGTGCTGAAAACGTATTAACAAACGTCGATCAAAGTGTAAATTCAGTT
TTAAGGAGTTTACTGCTTGCTGATTCCACTAAGAAACGAACAGAAAATCA
AAAAATTTTTAATGGGAAAACTAATTCAAATTCATTGAATAAAAAAATTG
TTGGAAAAGTCAGTGATGTTGGCAATAATGCAACCTCTAACAACGTTTCA
AAATATGGTCCAGTCTTTCAATTAATAGATGGTAAATATGTTCAAATTGG
TGAAACATGTAAGGCATGTGGTGCATCATTTACAACTCGACATGAGCTGT
CTGATCATCAAAACAATGGTATAAAATATTACTGTGGGGAATGTAAACTA
TTGTTTAGATGTAAAAAAACTGTTAAAATGCATCTCCAAACACACATTGC
AGATTCAGGTGTTAGTCCCCAGGAGCCATCAAAGCCAACAAACTCTAAAC
TTCAAAACAAACCAGATGATGATGAGGACGTTCAATTTCAATGCAAGGAA
TGTGGGAAATTTTATACTTCTGAAAGTACCATGAGACGCCATTGTAAAAC
TCACTCAAAGCTCATTACTTGTGACAAATGCAATAAAGAATTTTCAATGG
AAGATTTTCAAATTCACATCAAAAGTTCCAAATGTAGTAAGAGAAAAACT
GTTTTTAAATGCAAGGAATGCAAGAAAAAGTTTTTGAAATTAAGCACTTT
GAATACTCATATAAAAACACACACCAAGCCTTATAGCTGCAAGGACTGTG
GTAAAAGTTTTTCAAAGAAGAGAGCTATGGAGCATCACCAAAGCATTAGA
AAATGTGTCTTAGAATGTAAGGATTGTGGTAAATCATTTTCAAGTAGAAT
CGATTTAAGAAAGCATTTAAATACTCATAAAAAATTTGAATGCACAGAAT
GTGGAAAGTTGTATGCTTCTAAGAATGCATTGGTGACTCATGAAAATATT
CACAAAGGACTATCCTTTGTTTGTGAAGTTTGTGGAAAGTCATTCGCAAC
ACTCAATTATATGAGAAGCCACAAAAAAAATCATGAGCCTTTAATGTTCA
ACTGCGAAGAATGTGGTAAATCTTTTTCAATAAAGAGTAAATTGCAGCGT
CATTTAAAAATACACGAAGGGCTCAAACCTTTTCAATGTGAATTATGCGG
GAAAGGTTTTGCAGAAAAGTCAGGTCTTCAAGGACACATGGTTTATCACG
TGGATGCTAGGCTTTTTGAATGTGAAACCTGTGGCAAAGGCTTTAAGACC
AAACATAACCTTTCGTGGCATAATAAAACTGTAAAGTGCAAGAAGGATTA
GATGGAGAGTGCTGAAAACGTATTAACAAACGTCGATCAAAGTGTAAATT
CAGTTTTAAGGAGTTTACTGCTTGCTGATTCCACTAAGAAACGAACAGAA
AATCAAAAAATTTTTAATGGGAAAACTAATTCAAATTCATTGAATAAAAA
AATTGTTGGAAAAGTCAGTGATGTTGGCAATAATGCAACCTCTAACAACG
TTTCAAAATATGGTCCAGTCTTTCAATTAATAGATGGTAAATATGTTCAA
ATTGGTGAAACATGTAAGGCATGTGGTGCATCATTTACAACTCGACATGA
GCTGTCTGATCATCAAAACAATGGTATAAAATATTACTGTGGGGAATGTA
AACTATTGTTTAGATGTAAAAAAACTGTTAAAATGCATCTCCAAACACAC
ATTGCAGATTCAGGTGTTAGTCCCCAGGAGCCATCAAAGCCAACAAACTC
TAAACTTCAAAACAAACCAGATGATGATGAGGACGTTCAATTTCAATGCA
AGGAATGTGGGAAATTTTATACTTCTGAAAGTACCATGAGACGCCATTGT
AAAACTCACTCAAAGCTCATTACTTGTGACAAATGCAATAAAGAATTTTC
AATGGAAGATTTTCAAATTCACATCAAAAGTTCCAAATGTAGTAAGAGAA
AAACTGTTTTTAAATGCAAGGAATGCAAGAAAAAGTTTTTGAAATTAAGC
ACTTTGAATACTCATATAAAAACACACACCAAGCCTTATAGCTGCAAGGA
CTGTGGTAAAAGTTTTTCAAAGAAGAGAGCTATGGAGCATCACCAAAGCA
TTAGAAAATGTGTCTTAGAATGTAAGGATTGTGGTAAATCATTTTCAAGT
AGAATCGATTTAAGAAAGCATTTAAATACTCATAAAAAATTTGAATGCAC
AGAATGTGGAAAGTTGTATGCTTCTAAGAATGCATTGGTGACTCATGAAA
ATATTCACAAAGGACTATCCTTTGTTTGTGAAGTTTGTGGAAAGTCATTC
GCAACACTCAATTATATGAGAAGCCACAAAAAAAATCATGAGCCTTTAAT
GTTCAACTGCGAAGAATGTGGTAAATCTTTTTCAATAAAGAGTAAATTGC
AGCGTCATTTAAAAATACACGAAGGGCTCAAACCTTTTCAATGTGAATTA
TGCGGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049312-exon-scaffold_154-1575043694:829808..829993 | TCONS_00049312-exon-scaffold_154-1575043694:829808..829993 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1575043694:824181..824377 | TCONS_00049312-exon-scaffold_154-1575043694:824181..824377 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1575043694:822846..824029 | TCONS_00049312-exon-scaffold_154-1575043694:822846..824029 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1575043694:819752..820147 | TCONS_00049312-exon-scaffold_154-1575043694:819752..820147 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1510915933:829808..829993 | TCONS_00049312-exon-scaffold_154-1510915933:829808..829993 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1510915933:824181..824377 | TCONS_00049312-exon-scaffold_154-1510915933:824181..824377 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1510915933:822846..824029 | TCONS_00049312-exon-scaffold_154-1510915933:822846..824029 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1510915933:819752..820147 | TCONS_00049312-exon-scaffold_154-1510915933:819752..820147 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1491911889:829808..829993 | TCONS_00049312-exon-scaffold_154-1491911889:829808..829993 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1491911889:824181..824377 | TCONS_00049312-exon-scaffold_154-1491911889:824181..824377 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1491911889:822846..824029 | TCONS_00049312-exon-scaffold_154-1491911889:822846..824029 | Clytia hemisphaerica | exon |
| TCONS_00049312-exon-scaffold_154-1491911889:819752..820147 | TCONS_00049312-exon-scaffold_154-1491911889:819752..820147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:819752..829993 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00049312 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2) HSP 1 Score: 180.259 bits (456), Expect = 1.452e-47 Identity = 133/375 (35.47%), Postives = 201/375 (53.60%), Query Frame = 1
Query: 631 QLIDGKYVQIGET---CKACGASFTTRHELSDHQ--NNGIKYY-CGECKLLFRCKKTVKMHLQTHIADSGVSPQEPSK--PTNSKLQ-NKPDDDEDVQFQCKECGKFYTSESTMRRHCKTHS--KLITCDKCNKEFSME-DFQIHIKSSKCSXXXXXXXXXXXXXXXXXXSTLNTHIKTHT--KPYSCKDCGKSFSKKRAMEHHQSIRKCVLE--CKDCGKSFSSRIDLRKHLNTH---KKFECTECGKLYASKNALVTHENIHKG-LSFVCEVCGKSFATLNYMRSHKKNH-EPLMFNCEECGKSFSIKSKLQRHLKIHEGLKPFQCELCGKGFAEKSGLQGHMVYHVDARLFECETCGKGFKTKHNLSWHNKT 1692
+L D + V G+ C CG F R L+ HQ + G K Y C EC F ++ H + H + +E K NS LQ ++ + ++C+ECGK ++ S ++ H + H+ K C++C K FS + QIH + + +KC+EC K F K STL H + HT KPY C +CGKSFS++ ++ HQS+ C+ CGK FS R L+ H H K ++C CGK ++ + L H +H G + CEVC K F+ + +++H++ H E + CE+CGK FS S LQ H ++H G KP++CE+CGKGF+++S LQ H H + ++C+ CGKGF+ L H +
Sbjct: 511 KLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIH---QRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRV 882 HSP 2 Score: 127.102 bits (318), Expect = 3.513e-30 Identity = 72/195 (36.92%), Postives = 103/195 (52.82%), Query Frame = 1
Query: 1123 IKTHTKPYSCKDCGKSFSKKRAMEHHQSIRKCVLECKDCGKSFSSRIDLRKHLNTH---KKFECTECGKLYASKNALVTHENIHKGL-SFVCEVCGKSFATLNYMRSHKKNHE-PLMFNCEECGKSFSIKSKLQRHLKIHEGLKPFQCELCGKGFAEKSGLQGHMVYHVDARLFECETCGKGFKTKHNLSWHNKT 1692
+ T +PY C SFS ++ H I K+ G F+ L+ H H K ++C CGK + ++ L H+ +H G + CE C K F+ +Y+++H++ H + CEECGK FS S LQ H ++H G KP++CE CGKGF+ S LQGH H + F+CE CGKGF NL H +
Sbjct: 464 VHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIGEKPRKEHGNGFNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRV 658
The following BLAST results are available for this feature:
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