TCONS_00049318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049318
Unique NameTCONS_00049318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049318 ID=TCONS_00049318|Name=TCONS_00049318|organism=Clytia hemisphaerica|type=transcript|length=1491bp
CTTTTTTCTTAcagtaaaaaaaacatgtacagcATGAAGCAGTAATGATT
AATAATCAATCAGAAATCTAGGGAATGTACAAGAGAAACTCGTTAATTTT
CATTTAAGAAAACTAAACCAACCAAAAACGAAGTGTCATCGAAccaaaaa
agactttaaaatgaGTAAAATCCCAGTCGTTGACGAAGTTGTCCGATCGG
TCCAATCACTGGGTGATGCCATTGTTGGAAAACCCGATCGGGCGAGGTCA
AGATGGGAAAATTGGACAGATGATAGTTTTATTGGAACTGCGGGAAAAAC
TGTTGCCTTAACAACCGCCGCTGGGTTGGCCGCACCCTTCAGTAGTGACA
CGGCAGgTGATCTGATCAGTATGGCAGGACGTAATGGGGAAAAGTTAAGT
GCAATAACATTGAGTGCTGGATCACAAGTTGTTGGTGTTACTGCTCAAGT
TCTTGCTCATGGTATACCTAACCCTGTATCTGGGGCTTGCAATGGATTCG
CTAGAGCAGCTAACAAGGTAATAAACGCGATGGCAGAAGACAAAAAAGAA
GGAATTGATTGGAAGAAGATCAGCGAAGTAGCTAAAATTGATGTCGCAAA
GGGTGCTGCAAGTTCCGATGGAATGATACCTTACGCTGGAAAAGCTGTCG
aaaaaacgattaaaaatgAAGAGGCGGAGTTTGACCATGGCGAGGAATGG
TCAAATTGGGGTGTGGATGTTGTCACCGCTGCTGTTCTACTTTGACCtaa
agtgaaaaatttaatctttGCTTGATAACTTAATGCAAAGGTGTAGGGAG
aacATTTAAAAATGAAGAGGCGCGGTTTGACCATGGCGAGGAATGGTCAA
ATTGGGGTGTGAATGTTGTCACCGCTGCTGTACTACCTTGACCTAAAGTG
AAAGATTTAATCTTCGATGCTTTTTCACGCTTTTCCTGTATTGATCACGT
GAAAAGTAATTGTTCTTCAATCGcatattataaacttttaagGTTAAGGA
TTTTGTCGTCTTCGATTTTGGTCTTATAAACCACGgagacacagatagaa
catccTTTAACGACAAAAATAATAGCGTCACCATTCCAGCCGCGGATTTC
TTATATGATTACATAAAAAGAAGACTGATATGTGATTAGAATTTTTATAT
TGAAACAATTGATATCTTTTAAGTAACGCTGAAATTTGAAGTAACGAATT
GGACTATTCCAGCTTTATTCAACTCCTTCTAATGTTGACTTGGTCGGATT
CCTTGTCCAAGAAAAGAAGGTGTCCGACCAAAAAAACATAGGAAATCCAG
GGAGTCAATGACATTTTGTAAAAAGCGATCAAGggaatttataaaatttt
ctatAGAAATCCAGGACATTTTGGGTGAAGTGATTTTTTATCTggaatac
actctttttttaaataagaaccaGTAGATTTTTGATGAGGATCGgctatt
cttcaatttttttccactttgagtctcaaattgttcttatc
Run BLAST on NCBI

protein sequence of TCONS_00049318-protein

>TCONS_00049318-protein ID=TCONS_00049318-protein|Name=TCONS_00049318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MSKIPVVDEVVRSVQSLGDAIVGKPDRARSRWENWTDDSFIGTAGKTVAL
TTAAGLAAPFSSDTAGDLISMAGRNGEKLSAITLSAGSQVVGVTAQVLAH
GIPNPVSGACNGFARAANKVINAMAEDKKEGIDWKKISEVAKIDVAKGAA
SSDGMIPYAGKAVEKTIKNEEAEFDHGEEWSNWGVDVVTAAVLL
Run BLAST on NCBI

transcript from alignment at scaffold_154:921235..925305-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049318 ID=TCONS_00049318|Name=TCONS_00049318|organism=Clytia hemisphaerica|type=transcript|length=4071bp|location=Sequence derived from alignment at scaffold_154:921235..925305- (Clytia hemisphaerica)
CTTTTTTCTTACAGTAAAAAAAACATGTACAGCATGAAGCAGTAATGATT
AATAATCAATCAGAAATCTAGGGAATGTACAAGAGAAACTCGTTAATTTT
CATTTAAGAAAACTAAACCAACCAAAAACGAAGTGTCATCGAACCAAAAA
AGACTTTAAAATGAGTAAAATCCCAGTCGTTGACGAAGTTGTCCGATCGG
TCCAATCACTGGGTGATGCCATTGTTGGAAAACCCGATCGGGCGAGGTCA
AGATGGGAAAATTGGACAGATGATAGTTTTATTGGAACTGCGGGAAAAAC
TGTTGCCTTAACAACCGCCGCTGGGTTGGCCGCACCCTTCAGTAGTGACA
CGGCAGGTGAGTGTGTCTTCTACAAAACATTCTGATGCTAAGCCAAGTTG
TGGTTTGGAAGTCTTGACCTTTTAAAAGTTTTCTCTTAAGAAATTGAATA
TCTCTTAGATTCAGAGATTTCGTTTAGGACCATGGAAATGGGAGGAAACT
TTGGGCTGAATTTCAGTTTTTATTATTTGCTTATCTTTTAATGCTTTTGA
TCTTACAACGGTTAAAATTATCACGTTCAGTTTTACTCCCTCCTCTTTTT
TGAACTGGTAAGTAAGTTTGCGTTCGCATTCGAGGTCGACCTTAAGGCTC
CCTGTTCATATAGCTGTCTACCCAAAGAAGGGGAGGGCAGGGCGTCACTT
CTTTTCTTGGACTTTTTTTTTAGACTCTTTTTCCTGGAGGTTTGAACCTA
CAACCTTACGTACCGCAACGCTAATGTTCTACCTATGTATAAGAATCGCA
CTATTTATTTTATTATTTCAGGTGATCTGATCAGTATGGCAGGACGTAAT
GGGGAAAAGTTAAGTGCAATAACATNGTGATCTGATCAGTATGGCAGGAC
GTAATGGGGAAAGGTTAAGTGCAATAACATTGAGTGCTGGATCACAAGTT
GTTGGTGTTACTGCTCAAGTTCTTGCTCATGGTATACCTAACCCTGTATC
TGGGGCTTGCAATGGATTCGCTAGAGCAGCTAACAAGGTGATTACTATGG
TCTAAACATAGATTTATAAAGCCCGAAGGGCTCCCAGCTGGCACACAACG
TTGTTTCAACGTTTATCTAACGTTCACATCGTCCATATAACGTTAGATGA
ACGTTGAAATAACGTTGTTTGCCAGCTGGGCTAGATGTCGTGCTTTGGAT
GAAAAGTGTGCCGAGGTTAGGTAGGAAATCCTACATAGGTCACGTGACAT
TACAATTGAATTTCAGCGCTTGACCAATAAGAAGCTTTGCAGGTTTTTGG
AAACAATAGCAGCAGCAATATTTTTTGCAATACCCACTTTTTTTCTTGGA
AGAGCTTGAAGCACGACATCTAGCTCTTCGGGTTTAATAAGGTTTTTGAT
GTGTTCGAGCAGGGATATGTTATAGCGGAGCTGGATAACGCACATTTAAA
AAAGCCTTGTTCTATCTCTGTCCCTGACATTAAAATTTAATATGAAATTT
AACTTTTTTAATTACAAACTCGTGAAATTTGGATTTCCTCTTAGCCAATG
ATTCTGCTGCTGCATTTATCGTTCACGATTAAAAACTTTTAATTATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTACAAGGAAGCTTTTGGGGTATCTTCTACAAATATTATTTTGATGA
AAAGCGGGAACATCATAGCAAAATATGTGCAAACGTACTGCATGAATACT
TTCTCTGCTTCATTTTTCTTATAAAAACAGAACACTCAAGGGGACAGAGA
TGGATTTCTATTATGAACAGTTTACAATAGAAAAGACAAAGAATCAATCC
GCTAAGGGATTCTCGTCCTTCATCCAGCTCCGCTATAACATATCCCTGGT
TCGAGTTATGGAGGTTCAAGTTACTCAGTAACTGCTGTACTGCCATTTAG
TTTAAAAGGCTAAAGGACCATTCAAATGATAGAGTAAGGTTGACAGGAAA
TTTGCCAAAGTTTCCAGAGGCACTTCCTTTGCGAATTATTTCTAAAATGA
GAATAAGAAAACACCCCCTTCTCGAAGACCCGGTGGAATTCTATCAGCCA
GTGGGGGTAAAAATAACGGACCATAACTCGATAGGGGATTGATAGTCCCA
TGTTTCTAATGGCTGAGGCTAGCCAAAAAATTCAGTGGGGATGGAAAAAA
TAGTTCAATATTTTGCAGTGGGGATTTGCTCATCCCATTATTTTCAGCAG
GGACAAAAATTAGAGTATAATTTTCCACTGGGGACGTTATTTTGGCCAAT
TTTTACAGTGGGTCTGTGAGAAGGGGGTGTAGGAATGGCCAGAACTGAAA
GATGAGAATCTTCGCAATATTTTTCCGTTTTTCTATTTTCATTTTCGTTT
CCCAGGTAATAAACGCGATGGCAGAAGACAAAAAAGAAGGAATTGATTGG
AAGAAGATCAGCGAAGTAGCTAAAATTGATGTCGCAAAGGGTGCTGCAAG
TTCCGATGGAATGATACCTTACGCTGGAAAAGCTGTCGAAAAAACGATTA
AAAATGAAGAGGCGGAGTTTGACCATGGCGAGGAATGGTCAAATTGGGGT
GTGGATGTTGTCACCGCTGCTGTTCTACTTTGACCTAAAGTGAAAAATTT
AATCTTTGCTTGATAACTTAATGCAAAGGTGTAGGGAGAACATTTAAAAA
TGAAAAGGCGCGGTTTGACCATGGCGAGAAATGGTCAAATTGGGGTGTGA
ATGTTGTCACCGTTGCTGTACCGTGATCTAAACTAAAACATTTATTTTCA
TTTGATAACTTTATGCAAAGGCGTAGGGAAACATTTAAAAATGAAGAGGC
GCGGTTTGACAATGGCGAGGAATGGTCAAATTGGGGTGTGAATGTTGTCA
CCGCTGTTGTTCTACCTTGATCTAAAGTAAAAGATTATTATAATCTTTGC
TTGATAACTTTATGCAAAGGTGTAAGGGAGAACATCTAAAAATGAAGAGG
CGCGGTTTGACCATGGCGAGGAATGGTCAAATTGGGGTGTGAATGTTGTC
ACCGCTGCTGTACTACCTTGACCTAAAGTGAAAGATTTAATCTTCGATGC
TTTTTCACGCTTTTCCTGTATTGATCACGTGAAAAGTAATTGTTCTTCAA
TCGCATATTATAAACTTTTAAGGTTAAGGATTTTGTCGTCTTCGATTTTG
GTCTTATAAACCACGGAGACACAGATAGAACATCCTTTAACGACAAAAAT
AATAGCGTCACCATTCCAGCCGCGGATTTCTTATATGATTACATAAAAAG
AAGACTGATATGTGATTAGAATTTTTATATTGAAACAATTGATATCTTTT
AAGTAACGCTGAAATTTGAAGTAACGAATTGGACTATTCCAGCTTTATTC
AACTCCTTCTAATGTTGACTTGGTCGGATTCCTTGTCCAAGAAAAGAAGG
TGTCCGACCAAAAAAACATAGGAAATCCAGGGAGTCAATGACATTTTGTA
AAAAGCGATCAAGGGAATTTATAAAATTTTCTATAGAAATCCAGGACATT
TTGGGTGAAGTGATTTTTTATCTGGAATACACTCTTTTTTTAAATAAGAA
CCAGTAGATTTTTGATGAGGATCGGCTATTCTTCAATTTTTTTCCACTTT
GAGTCTCAAATTGTTCTTATC

Coding sequence (CDS) from alignment at scaffold_154:921235..925305-

>TCONS_00049318 ID=TCONS_00049318|Name=TCONS_00049318|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_154:921235..925305- (Clytia hemisphaerica)
GTAATAAACGCGATGGCAGAAGACAAAAAAGAAGGAATTGATTGGAAGAA
GATCAGCGAAGTAGCTAAAATTGATGTCGCAAAGGGTGCTGCAAGTTCCG
ATGGAATGATACCTTACGCTGGAAAAGCTGTCGAAAAAACGATTAAAAAT
GAAGAGGCGGAGTTTGACCATGGCGAGGAATGGTCAAATTGGGGTGTGGA
TGTTGTCACCGCTGCTGTTCTACTTTGAGTTAAGTGCAATAACATTGAGT
GCTGGATCACAAGTTGTTGGTGTTACTGCTCAAGTTCTTGCTCATGGTAT
ACCTAACCCTGTATCTGGGGCTTGCAATGGATTCGCTAGAGCAGCTAACA
AGGTGATCTGATCAGTATGGCAGGACGTAATGGGGAAAAATGAGTAAAAT
CCCAGTCGTTGACGAAGTTGTCCGATCGGTCCAATCACTGGGTGATGCCA
TTGTTGGAAAACCCGATCGGGCGAGGTCAAGATGGGAAAATTGGACAGAT
GATAGTTTTATTGGAACTGCGGGAAAAACTGTTGCCTTAACAACCGCCGC
TGGGTTGGCCGCACCCTTCAGTAGTGACACGGCAGGTAATAAACGCGATG
GCAGAAGACAAAAAAGAAGGAATTGATTGGAAGAAGATCAGCGAAGTAGC
TAAAATTGATGTCGCAAAGGGTGCTGCAAGTTCCGATGGAATGATACCTT
ACGCTGGAAAAGCTGTCGAAAAAACGATTAAAAATGAAGAGGCGGAGTTT
GACCATGGCGAGGAATGGTCAAATTGGGGTGTGGATGTTGTCACCGCTGC
TGTTCTACTTTGAGTTAAGTGCAATAACATTGAGTGCTGGATCACAAGTT
GTTGGTGTTACTGCTCAAGTTCTTGCTCATGGTATACCTAACCCTGTATC
TGGGGCTTGCAATGGATTCGCTAGAGCAGCTAACAAGGTGATCTGATCAG
TATGGCAGGACGTAATGGGGAAAAATGAGTAAAATCCCAGTCGTTGACGA
AGTTGTCCGATCGGTCCAATCACTGGGTGATGCCATTGTTGGAAAACCCG
ATCGGGCGAGGTCAAGATGGGAAAATTGGACAGATGATAGTTTTATTGGA
ACTGCGGGAAAAACTGTTGCCTTAACAACCGCCGCTGGGTTGGCCGCACC
CTTCAGTAGTGACACGGCAGGTAATAAACGCGATGGCAGAAGACAAAAAA
GAAGGAATTGATTGGAAGAAGATCAGCGAAGTAGCTAAAATTGATGTCGC
AAAGGGTGCTGCAAGTTCCGATGGAATGATACCTTACGCTGGAAAAGCTG
TCGAAAAAACGATTAAAAATGAAGAGGCGGAGTTTGACCATGGCGAGGAA
TGGTCAAATTGGGGTGTGGATGTTGTCACCGCTGCTGTTCTACTTTGAGT
TAAGTGCAATAACATTGAGTGCTGGATCACAAGTTGTTGGTGTTACTGCT
CAAGTTCTTGCTCATGGTATACCTAACCCTGTATCTGGGGCTTGCAATGG
ATTCGCTAGAGCAGCTAACAAGGTGATCTGATCAGTATGGCAGGACGTAA
TGGGGAAAAATGAGTAAAATCCCAGTCGTTGACGAAGTTGTCCGATCGGT
CCAATCACTGGGTGATGCCATTGTTGGAAAACCCGATCGGGCGAGGTCAA
GATGGGAAAATTGGACAGATGATAGTTTTATTGGAACTGCGGGAAAAACT
GTTGCCTTAACAACCGCCGCTGGGTTGGCCGCACCCTTCAGTAGTGACAC
GGCAGGTAATAAACGCGATGGCAGAAGACAAAAAAGAAGGAATTGATTGG
AAGAAGATCAGCGAAGTAGCTAAAATTGATGTCGCAAAGGGTGCTGCAAG
TTCCGATGGAATGATACCTTACGCTGGAAAAGCTGTCGAAAAAACGATTA
AAAATGAAGAGGCGGAGTTTGACCATGGCGAGGAATGGTCAAATTGGGGT
GTGGATGTTGTCACCGCTGCTGTTCTACTTTGAGTTAAGTGCAATAACAT
TGAGTGCTGGATCACAAGTTGTTGGTGTTACTGCTCAAGTTCTTGCTCAT
GGTATACCTAACCCTGTATCTGGGGCTTGCAATGGATTCGCTAGAGCAGC
TAACAAGGTGATCTGATCAGTATGGCAGGACGTAATGGGGAAAAATGAGT
AAAATCCCAGTCGTTGACGAAGTTGTCCGATCGGTCCAATCACTGGGTGA
TGCCATTGTTGGAAAACCCGATCGGGCGAGGTCAAGATGGGAAAATTGGA
CAGATGATAGTTTTATTGGAACTGCGGGAAAAACTGTTGCCTTAACAACC
GCCGCTGGGTTGGCCGCACCCTTCAGTAGTGACACGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031290XLOC_031290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049318-exon-scaffold_154-1575043694:924950..925305TCONS_00049318-exon-scaffold_154-1575043694:924950..925305Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1575043694:924448..924484TCONS_00049318-exon-scaffold_154-1575043694:924448..924484Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1575043694:924269..924392TCONS_00049318-exon-scaffold_154-1575043694:924269..924392Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1575043694:922215..922500TCONS_00049318-exon-scaffold_154-1575043694:922215..922500Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1575043694:922058..922073TCONS_00049318-exon-scaffold_154-1575043694:922058..922073Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1575043694:921235..921906TCONS_00049318-exon-scaffold_154-1575043694:921235..921906Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1510915933:924950..925305TCONS_00049318-exon-scaffold_154-1510915933:924950..925305Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1510915933:924448..924484TCONS_00049318-exon-scaffold_154-1510915933:924448..924484Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1510915933:924269..924392TCONS_00049318-exon-scaffold_154-1510915933:924269..924392Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1510915933:922215..922500TCONS_00049318-exon-scaffold_154-1510915933:922215..922500Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1510915933:922058..922073TCONS_00049318-exon-scaffold_154-1510915933:922058..922073Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1510915933:921235..921906TCONS_00049318-exon-scaffold_154-1510915933:921235..921906Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1491911889:924950..925305TCONS_00049318-exon-scaffold_154-1491911889:924950..925305Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1491911889:924448..924484TCONS_00049318-exon-scaffold_154-1491911889:924448..924484Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1491911889:924269..924392TCONS_00049318-exon-scaffold_154-1491911889:924269..924392Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1491911889:922215..922500TCONS_00049318-exon-scaffold_154-1491911889:922215..922500Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1491911889:922058..922073TCONS_00049318-exon-scaffold_154-1491911889:922058..922073Clytia hemisphaericaexon
TCONS_00049318-exon-scaffold_154-1491911889:921235..921906TCONS_00049318-exon-scaffold_154-1491911889:921235..921906Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049318-proteinTCONS_00049318-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:921235..925305 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.470454	0.458766	0.188002	0.107293	0.522474	0.353885	1.28084	1.94855	5.12964	4.41952	11.2726	2.79131	8.0089	7.18458	3.78229	6.01692	1.72567	3.13762	5.01833	5.86412	1.24056	1.20395	1.47228	1.26221	6.03384	5.43358	2.11606	1.09614	0.141444	0.0955177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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