TCONS_00049320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049320
Unique NameTCONS_00049320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049320 ID=TCONS_00049320|Name=TCONS_00049320|organism=Clytia hemisphaerica|type=transcript|length=2228bp
AAGTAAACTCTCtttgaaagagaaaaaactcCATCGCTGTTGTCCTGAGA
ACCTAGATTCATGGAAAGAACCCGGCTTCATTTAAAACCTATTTTCATAT
CAGCGCTTAAAGGACTGGTGCTATTTTGAGTaacttaacaaaaaaataat
acgAGTAAAGTTTGTAAAATACAGTCCGAGCAATGAGGACCAAATTTCTA
TTAGTTATCATAATATGTATTGCAGCAAGTTGCAAAAGCACTCAAATCAT
CAATATTGGAGTAGATGGAGAAAAATGTATAAAGGAGGCAGGACCTTCTG
AGAAATCACTAACTGAATGTGTTGTCTTTTGTAAAGCATTGAAATGCTTA
AGTGCGTTGATGGAgaatggaaaatgtttttgtacAAATGAAGAATGTGG
ATCAAACAAGGTGACAAATTCAGAAGCGAGCGCCATGTTGTATCTAAGTC
GATTGAAAGTGATGACTCCACAACCTATTTGTTACCAAGGCAACAATAAG
AAATATGCGGCTTTCAAAGTAAAACACGATGGATTGATCAAGTACTTCAA
GTTGATCCATATCAACGGAAGTATTGAATGTATGCCAGGATCAACCGGGC
GATGGGGTTGTAGTCCGCTTTTCACAACAGACTGGGTAATGACTATCATG
ACGGATGCCGACAACCAAATCATCACATCTACAACGCTAGAAGGATCTCA
TGATATATTCCAGATCCCAAATTTTGATGGCGAGAATTCAGATCATTTGA
CTTTCACATCTGATGATCCGTTGCGAGTTGTGGTAGGTGACGAGTTTCGA
GTCTGGCATACTCAAGATTTGAATGACTTTAAGGCTGATAATAACTTTGG
TTCACACTGTATTCAAGTATACGCAAAATATTGCTAAGCAAGCCGGAAAA
AAGGGAATGTAACTAAAAATTTATGGCTTGTAATTTACTAAAGTAAGCAA
AGTTNAGGGAATGTAACTAAAAACTTATGGCTTGTAATTTACTAAAGTAC
TTCTTGTGGGATaattgaagtcgttgcagtaTTGTTTAAAGAGCTGATGT
TACTTCAATGTAATCAAAGTGTTATGTCATAGTAAGAACAAACAGATTCG
GTGAAGTCGTTGAAGTGAAATAACTCTACGGAAATGAACTTTATATAATA
ctctggaccaagtttctcaaacCCTGTCAAGGAAAATCTTTCATCGGAGt
tcttttgaaagtggtaccctaatgttagcactactcgatagcggtgcaAA
TGCTACTTTACTTCTAATACTTTTGGCGATGTAGCGCCGTAAAGCGTTtc
tttttaacactgcaatagTTTCCCCTCgggtaccattttcaaaaacaact
ccgatcaaagatgacgGATTTAGCTTGAGTAAGGAAACAAAAACAATAGA
CATgctgaatttcattttattttggtcacgtgatcaaTATTGGTCGGCAA
TCAGTAATATACAATGGCAAAAGCAACGGGCCCTCCTTTGCttatataaa
taaatatattttaatataaAATCTCGTATGAGAGCGTCTTTACCAATAAT
ACTTTACGGAAACATTGTTGTGTTCAAATATTATAGTAAAAGTAAATAGA
ATTTAAAAgctaaaatttacattacacAAGATAAAATACTTAgcaatttg
aatttgaaaaaatcgaaTTCATTCCGCTTGGACTTTTTATATGGGCTCTT
TGCACTTTAGCTATAATATGGATAAAGATTTTGAATCGAATtcaaaagtt
aatctgaaataGTTTCAAGACCGGTCAAATTAGTCTACAAATATAATTTG
CAATATCTCAATATTGGTGTTAACACATAGCATAAACCACGATTCACTGG
TTCAATTACCCTTGTTACAATAAGTTTTTTCGAATCTGGACGGAAAGCAT
AAAACCCATTGCAAAAGctattattcatgatatgcaccattgcaatgtct
tctgacattacatcacagatccaacagctgattggttttaAGTGTTGTAA
AGTCAGTTAATACgtcattttcaaccaatcagctgttgggtccatggaaa
acattgcaatggtgcatattatgaataaaGTAATACAAATAACTGTTTTT
AAGAACATCTCTTATGCTTGGTGCTGCTTAAATTACATTACCCTATTTAA
ATCCAGGATTCTTCAATTGTTCTTCAGTAGCAAAGCCAAGAGggcacaaa
atttgtgtaggagagcagattttcatgt
Run BLAST on NCBI

protein sequence of TCONS_00049320-protein

>TCONS_00049320-protein ID=TCONS_00049320-protein|Name=TCONS_00049320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MRTKFLLVIIICIAASCKSTQIINIGVDGEKCIKEAGPSEKSLTECVVFC
KALKCLSALMENGKCFCTNEECGSNKVTNSEASAMLYLSRLKVMTPQPIC
YQGNNKKYAAFKVKHDGLIKYFKLIHINGSIECMPGSTGRWGCSPLFTTD
WVMTIMTDADNQIITSTTLEGSHDIFQIPNFDGENSDHLTFTSDDPLRVV
VGDEFRVWHTQDLNDFKADNNFGSHCIQVYAKYC
Run BLAST on NCBI

transcript from alignment at scaffold_154:950705..954151-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049320 ID=TCONS_00049320|Name=TCONS_00049320|organism=Clytia hemisphaerica|type=transcript|length=3447bp|location=Sequence derived from alignment at scaffold_154:950705..954151- (Clytia hemisphaerica)
AAGTAAACTCTCTTTGAAAGAGAAAAAACTCCATCGCTGTTGTCCTGAGA
ACCTAGATTCATGGAAAGAACCCGGCTTCATTTAAAACCTATTTTCATAT
CAGCGCTTAAAGGACTGGTGCTATTTTGAGTAACTTAACAAAAAAATAAT
ACGAGTAAAGTTTGTAAAATACAGTCCGAGCAATGAGGACCAAATTTCTA
TTAGTTATCATAATATGTATTGCAGCAAGTTGCAAAAGCACTCAAATCAT
CAATATTGGAGTAGATGGAGAAAAATGTATAAAGGAGGCAGGACCTTCTG
AGAAATCACTAACTGAATGTGTTGTCTTTTGTAAAGCATTGAAATGCTTA
AGTGCGTTGATGGAGAATGGAAAATGTTTTTGTACAAATGAAGAATGTGG
ATCAAACAAGGTGACAAATTCAGAAGCGAGCGCCATGTTGTATCTAAGTA
AGAAATAATTTACTTTAAGAACTCATGTTTAGCCATGTATACTGCTCTTC
TTATCAGATGAGATGGAGTTTTTATAAGATACTTTAATAGTTGGTCATTT
GAAGTAATAAAAATGATGCGTTCGTTAGGAAAAGTTACAAAATTGTTTTA
TTACTGGTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAT
CTCGTCCCCTTCTTGTACATTGTGTCCCGAGAAAAGTGGATAAACTTTTA
TGTAAAGTAAAATCCTCAAAACTCATCATCTTAACTGGGCTCAGGATGAT
CAAAATAACATTAAATTTCTCTGTTCAATCAATGATATTCAATTCCCAAG
ATGATTGAATAGGTTTTTGAGATTGAAATATTAAGTATACAAGTCATAAA
ATTGTGTATAAGTTATGAGGATTTTATTTACATAAAAATGTGTCCAATAA
TTTGGGACACACTGTACAGTTGAATTTAATTCTCGAACTATGATACTGTC
CTCAATCAAATGTTTTTCATAAAAAAAATATGGCGTTTTGATTAATAAAA
TCTGACTTTATCAAAGGTTACAAATCTCTGGTGTGGCAAAGTTCATTCTA
AAAAAAAACACAAAAAGATCAAAAGCTAAGGGGTGGTGAAACAAGAAAAG
TAACGTCCTTCTTATTTCTGAACCAGCCCTAAAAACCGAGTTTAAAGCAA
CATTGTGCGTCGTCAACGTGGCTCTAGAATATCCCCTTCTCACAGGGACC
CCTTCCACTTGAAAAATTAGTCAATAAACCAATCCTCACAGTAAAATATC
ATGCTTTTCTGCCCATCCCCGCACTGAATATTCTGTCTTGAAAAAATGAA
ATTTGAATCCCAAGGCATAAAAAATATGGGAATATCTATCCCCATCATCG
AGTTTCAGTTCGTTATTTTTATCCCCTTTGGCTGAAAAAAATCCTACTGG
GTCTGCGAGAAGGGTTTATTCTAGGATATCAAACAATAAACCTTTTCGTA
AATTACGTCACGAACATCACTTGACTCGTTTTGAAATTATTGCCATCGTG
ATTAAATCCCAGCAGATTTTATTAAAACTACTTTCTATTCATAAAAAATC
ATTTTTTTCTCAAGGGACATAATAACCATGGTAATTGTTTGAATACGAGG
CAAGTGATGGTCGTGACGTAATTTATGAAAAGGCCTATTGACAGATCAAT
TTTATTTTCACTTTAGGTCGATTGAAAGTGATGACTCCACAACCTATTTG
TTACCAAGGCAACAATAAGAAATATGCGGCTTTCAAAGTAAAACACGATG
GATTGATCAAGTACTTCAAGTTGATCCATATCAACGGAAGTATTGAATGT
ATGCCAGGATCAACCGGGCGATGGGGTTGTAGTCCGCTTTTCACAACAGA
CTGGGTAATGACTATCATGACGGATGCCGACAACCAAATCATCACATCTA
CAACGCTAGAAGGATCTCATGATATATTCCAGATCCCAAATTTTGATGGC
GAGAATTCAGATCATTTGACTTTCACATCTGATGATCCGTTGCGAGTTGT
GGTAGGTGACGAGTTTCGAGTCTGGCATACTCAAGATTTGAATGACTTTA
AGGCTGATAATAACTTTGGTTCACACTGTATTCAAGTATACGCAAAATAT
TGCTAAGCAAGCCGGAAAAAAGGGAATGTAACTAAAAATTTATGGCTTGT
AATTTACTAAAGTAAGCAAAGTTNAGGGAATGTAACTAAAAACTTATGGC
TTGTAATTTACTAAAGTACTTCTTGTGGGATAATTGAAGTCGTTGCAGTA
TTGTTTAAAGAGCTGATGTTACTTCAATGTAATCAAAGTGTTATGTCATA
GTAAGAACAAACAGATTCGGTGAAGTCGTTGAAGTGAAATAACTCTACGG
AAATGAACTTTATATAATACTCTGGACCAAGTTTCTCAAACCCTGTCAAG
GAAAATCTTTCATCGGAGTTCTTTTGAAAGTGGTACCCTAATGTTAGCAC
TACTCGATAGCGGTGCAAATGCTACTTTACTTCTAATACTTTTGGCGATG
TAGCGCCGTAAAGCGTTTCTTTTTAACACTGCAATAGTTTCCCCTCGGGT
ACCATTTTCAAAAACAACTCCGATCAAAGATGACGGATTTAGCTTGAGTA
AGGAAACAAAAACAATAGACATGCTGAATTTCATTTTATTTTGGTCACGT
GATCAATATTGGTCGGCAATCAGTAATATACAATGGCAAAAGCAACGGGC
CCTCCTTTGCTTATATAAATAAATATATTTTAATATAAAATCTCGTATGA
GAGCGTCTTTACCAATAATACTTTACGGAAACATTGTTGTGTTCAAATAT
TATAGTAAAAGTAAATAGAATTTAAAAGCTAAAATTTACATTACACAAGA
TAAAATACTTAGCAATTTGAATTTGAAAAAATCGAATTCATTCCGCTTGG
ACTTTTTATATGGGCTCTTTGCACTTTAGCTATAATATGGATAAAGATTT
TGAATCGAATTCAAAAGTTAATCTGAAATAGTTTCAAGACCGGTCAAATT
AGTCTACAAATATAATTTGCAATATCTCAATATTGGTGTTAACACATAGC
ATAAACCACGATTCACTGGTTCAATTACCCTTGTTACAATAAGTTTTTTC
GAATCTGGACGGAAAGCATAAAACCCATTGCAAAAGCTATTATTCATGAT
ATGCACCATTGCAATGTCTTCTGACATTACATCACAGATCCAACAGCTGA
TTGGTTTTAAGTGTTGTAAAGTCAGTTAATACGTCATTTTCAACCAATCA
GCTGTTGGGTCCATGGAAAACATTGCAATGGTGCATATTATGAATAAAGT
AATACAAATAACTGTTTTTAAGAACATCTCTTATGCTTGGTGCTGCTTAA
ATTACATTACCCTATTTAAATCCAGGATTCTTCAATTGTTCTTCAGTAGC
AAAGCCAAGAGGGCACAAAATTTGTGTAGGAGAGCAGATTTTCATGT

Coding sequence (CDS) from alignment at scaffold_154:950705..954151-

>TCONS_00049320 ID=TCONS_00049320|Name=TCONS_00049320|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_154:950705..954151- (Clytia hemisphaerica)
GTCGATTGAAAGTGATGACTCCACAACCTATTTGTTACCAAGGCAACAAT
AAGAAATATGCGGCTTTCAAAGTAAAACACGATGGATTGATCAAGTACTT
CAAGTTGATCCATATCAACGGAAGTATTGAATGTATGCCAGGATCAACCG
GGCGATGGGGTTGTAGTCCGCTTTTCACAACAGACTGGGTAATGACTATC
ATGACGGATGCCGACAACCAAATCATCACATCTACAACGCTAGAAGGATC
TCATGATATATTCCAGATCCCAAATTTTGATGGCGAGAATTCAGATCATT
TGACTTTCACATCTGATGATCCGTTGCGAGTTGTGGTAGGTGACGAGTTT
CGAGTCTGGCATACTCAAGATTTGAATGACTTTAAGGCTGATAATAACTT
TGGTTCACACTGTATTCAAGTATACGCAAAATATTGCTAAATGAGGACCA
AATTTCTATTAGTTATCATAATATGTATTGCAGCAAGTTGCAAAAGCACT
CAAATCATCAATATTGGAGTAGATGGAGAAAAATGTATAAAGGAGGCAGG
ACCTTCTGAGAAATCACTAACTGAATGTGTTGTCTTTTGTAAAGCATTGA
AATGCTTAAGTGCGTTGATGGAGAATGGAAAATGTTTTTGTACAAATGAA
GAATGTGGATCAAACAAGGTGACAAATTCAGAAGCGAGCGCCATGTTGTA
TCTAAGTCGATTGAAAGTGATGACTCCACAACCTATTTGTTACCAAGGCA
ACAATAAGAAATATGCGGCTTTCAAAGTAAAACACGATGGATTGATCAAG
TACTTCAAGTTGATCCATATCAACGGAAGTATTGAATGTATGCCAGGATC
AACCGGGCGATGGGGTTGTAGTCCGCTTTTCACAACAGACTGGGTAATGA
CTATCATGACGGATGCCGACAACCAAATCATCACATCTACAACGCTAGAA
GGATCTCATGATATATTCCAGATCCCAAATTTTGATGGCGAGAATTCAGA
TCATTTGACTTTCACATCTGATGATCCGTTGCGAGTTGTGGTAGGTGACG
AGTTTCGAGTCTGGCATACTCAAGATTTGAATGACTTTAAGGCTGATAAT
AACTTTGGTTCACACTGTATTCAAGTATACGCAAAATATTGCTAAATGAG
GACCAAATTTCTATTAGTTATCATAATATGTATTGCAGCAAGTTGCAAAA
GCACTCAAATCATCAATATTGGAGTAGATGGAGAAAAATGTATAAAGGAG
GCAGGACCTTCTGAGAAATCACTAACTGAATGTGTTGTCTTTTGTAAAGC
ATTGAAATGCTTAAGTGCGTTGATGGAGAATGGAAAATGTTTTTGTACAA
ATGAAGAATGTGGATCAAACAAGGTGACAAATTCAGAAGCGAGCGCCATG
TTGTATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031291XLOC_031291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049320-proteinTCONS_00049320-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049320-exon-scaffold_154-1575043694:953705..954151TCONS_00049320-exon-scaffold_154-1575043694:953705..954151Clytia hemisphaericaexon
TCONS_00049320-exon-scaffold_154-1575043694:950705..952485TCONS_00049320-exon-scaffold_154-1575043694:950705..952485Clytia hemisphaericaexon
TCONS_00049320-exon-scaffold_154-1510915933:953705..954151TCONS_00049320-exon-scaffold_154-1510915933:953705..954151Clytia hemisphaericaexon
TCONS_00049320-exon-scaffold_154-1510915933:950705..952485TCONS_00049320-exon-scaffold_154-1510915933:950705..952485Clytia hemisphaericaexon
TCONS_00049320-exon-scaffold_154-1491911889:953705..954151TCONS_00049320-exon-scaffold_154-1491911889:953705..954151Clytia hemisphaericaexon
TCONS_00049320-exon-scaffold_154-1491911889:950705..952485TCONS_00049320-exon-scaffold_154-1491911889:950705..952485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:950705..954151 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0468514	0	0	0	0.0234514	0.0313513	0.100579	0	0.012626	0.0125619	0	0.0101037	0	0.42957	0.556825	0.224906	0.0672875	5.86877	5.86432	1.06707	1.993	1.83526	4.91314	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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