TCONS_00049321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049321
Unique NameTCONS_00049321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049321 ID=TCONS_00049321|Name=TCONS_00049321|organism=Clytia hemisphaerica|type=transcript|length=288bp
ATGAAACTCACATGTTGTAGCAAGCTGTCAGAGCCTTGACACATATTGTC
CAGTTGATTCAGTGTTATTCTGTGAACAAGACCAAAATACATGACGTTCA
TATcgcttgttttgttttggtatAAAATGGTTGTCCAactttttaactgt
ttttgtgTATTCTGTAGGGTTATTTGGTATCTCAATTTCTGGTAAAGTGT
TATGCAGTTCTATCATGGCTTCACCAGCGCAATGTAATAACAAAGCTTTC
TTTTGATTGTCATCATTAATACCAGCAGCAATAAGGTN
Run BLAST on NCBI

transcript from alignment at scaffold_154:26465..26752

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049321 ID=TCONS_00049321|Name=TCONS_00049321|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at scaffold_154:26465..26752 (Clytia hemisphaerica)
NACCTTATTGCTGCTGGTATTAATGATGACAATCAAAAGAAAGCTTTGTT
ATTACATTGCGCTGGTGAAGCCATGATAGAACTGCATAACACTTTACCAG
AAATTGAGATACCAAATAACCCTACAGAATAcacaaaaacagttaaaaag
tTGGACAACCATTTTataccaaaacaaaacaagcgATATGAACGTCATGT
ATTTTGGTCTTGTTCACAGAATAACACTGAATCAACTGGACAATATGTGT
CAAGGCTCTGACAGCTTGCTACAACATGTGAGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031292XLOC_031292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049321-exon-scaffold_154-1491911889:26465..26752TCONS_00049321-exon-scaffold_154-1491911889:26465..26752Clytia hemisphaericaexon
TCONS_00049321-exon-scaffold_154-1510915933:26465..26752TCONS_00049321-exon-scaffold_154-1510915933:26465..26752Clytia hemisphaericaexon
TCONS_00049321-exon-scaffold_154-1575043694:26465..26752TCONS_00049321-exon-scaffold_154-1575043694:26465..26752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:26465..26752 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60475	2.64279	2.14267	1.00289	4.47272	0.95241	0	2.15144	0.753136	4.27871	3.36024	5.26762	3.4065	0.881692	1.17718	2.05692	2.10523	1.65683	2.85019	2.74006	2.50561	3.0385	1.54441	1.86328	0.479784	4.71015	2.16037	5.01954	0	0.136842
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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