TCONS_00049340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049340
Unique NameTCONS_00049340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049340 ID=TCONS_00049340|Name=TCONS_00049340|organism=Clytia hemisphaerica|type=transcript|length=412bp
TTTTTGAATTTCCCCGCActctccatttttcattttcagagttATTATTT
GCGTTACGTTCTTTAGCTTGgttcgaaagttttttaaattgGTTTCTTTC
ATCGGGTGTTAGATCTTCAGTGATACTGACTGCCCTATATTTTTCAATAC
CCTTAAGAAGACAAAGATTGCCAAAGAGTGTGGACTTTCCTCTCTCGTTT
GAGAGACAAAGCAAAAGAGGTCGCTTCTTCTCTTGTGATGGACTTCCAAG
ACGAGTGACACGCTTGATTTCAACCCGGGAGTGTGTATCTCTAACAAGAT
CTTTTGCCCACTTGAGGTCGTCATTAGTTTCTTGCTCAGTTAATCCGTGA
ACAATGATGTTGGAAGACCTTTTGAATTTATAGTTCTCTTCCGCGTCCTC
CTCTCGCCATGC
Run BLAST on NCBI

protein sequence of TCONS_00049340-protein

>TCONS_00049340-protein ID=TCONS_00049340-protein|Name=TCONS_00049340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
AWREEDAEENYKFKRSSNIIVHGLTEQETNDDLKWAKDLVRDTHSRVEIK
RVTRLGSPSQEKKRPLLLCLSNERGKSTLFGNLCLLKGIEKYRAVSITED
LTPDERNQFKKLSNQAKERNANNNSENEKWRVRGNSK
Run BLAST on NCBI

transcript from alignment at scaffold_154:581418..581829

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049340 ID=TCONS_00049340|Name=TCONS_00049340|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at scaffold_154:581418..581829 (Clytia hemisphaerica)
GCATGGCGAGAGGAGGACGCGGAAGAGAACTATAAATTCAAAAGGTCTTC
CAACATCATTGTTCACGGATTAACTGAGCAAGAAACTAATGACGACCTCA
AGTGGGCAAAAGATCTTGTTAGAGATACACACTCCCGGGTTGAAATCAAG
CGTGTCACTCGTCTTGGAAGTCCATCACAAGAGAAGAAGCGACCTCTTTT
GCTTTGTCTCTCAAACGAGAGAGGAAAGTCCACACTCTTTGGCAATCTTT
GTCTTCTTAAGGGTATTGAAAAATATAGGGCAGTCAGTATCACTGAAGAT
CTAACACCCGATGAAAGAAACcaatttaaaaaactttcgaacCAAGCTAA
AGAACGTAACGCAAATAATaactctgaaaatgaaaaatggagagTGCGGG
GAAATTCAAAAA

Coding sequence (CDS) from alignment at scaffold_154:581418..581829

>TCONS_00049340 ID=TCONS_00049340|Name=TCONS_00049340|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_154:581418..581829 (Clytia hemisphaerica)
GCATGGCGAGAGGAGGACGCGGAAGAGAACTATAAATTCAAAAGGTCTTC
CAACATCATTGTTCACGGATTAACTGAGCAAGAAACTAATGACGACCTCA
AGTGGGCAAAAGATCTTGTTAGAGATACACACTCCCGGGTTGAAATCAAG
CGTGTCACTCGTCTTGGAAGTCCATCACAAGAGAAGAAGCGACCTCTTTT
GCTTTGTCTCTCAAACGAGAGAGGAAAGTCCACACTCTTTGGCAATCTTT
GTCTTCTTAAGGGTATTGAAAAATATAGGGCAGTCAGTATCACTGAAGAT
CTAACACCCGATGAAAGAAACcaatttaaaaaactttcgaacCAAGCTAA
AGAACGTAACGCAAATAATaactctgaaaatgaaaaatggagagTGCGGG
GAAATTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031311XLOC_031311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049340-exon-scaffold_154-1491911889:581418..581829TCONS_00049340-exon-scaffold_154-1491911889:581418..581829Clytia hemisphaericaexon
TCONS_00049340-exon-scaffold_154-1510915933:581418..581829TCONS_00049340-exon-scaffold_154-1510915933:581418..581829Clytia hemisphaericaexon
TCONS_00049340-exon-scaffold_154-1575043694:581418..581829TCONS_00049340-exon-scaffold_154-1575043694:581418..581829Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049340-proteinTCONS_00049340-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:581418..581829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.14581	2.72681	5.34277	5.03347	0	1.11744	0.820934	0.210353	0.441819	0.729685	1.23944	0.58197	0.697393	0.965666	0.893147	0.319495	0.131197	0.806837	1.48625	1.16644	1.3518	0.74178	0.400769	0.364357	0.18764	0.83732	0.718922	1.27875	0.96989	0.395266
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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