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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049344 ID=TCONS_00049344|Name=TCONS_00049344|organism=Clytia hemisphaerica|type=transcript|length=2057bp
TTCTATATTACCTTCACCTATATTTCCATGGGAGCAGTATATTTAAATAT
TGATAATACCAACAAAATAATATATGAGTTCTACTACATACTAAAATAAT
GCTTGAGTATTAGATTATGAATTGCAAACAAAAAGCAACTGAAAAAATTA
TGATTAAAATTTagtattttgaaataaaaaatgtctGTTTTAAGGAAGGA
ATTAACTATTTTTAGTGAAGATTGTAAAAGAAACGGCCAGAAAACTTGCA
ATGAAAATTTGGGCTTTTTGAGGTCCCTGATAATAGGGTTGTCGCTTCCT
CTTGATAGATGATCAACGCTTTACATCACGGcattcatgacgtaatgctt
ATACTACACACAACCACCCggtcttttttgggtgcttccgtatgaaacat
tacgtcatgaatatcatgaattgaagtATTAGAAGtatactgagacggaa
aaatcgtctgagacgagtagtttgtaaaatgtgatctgtggaggaGATCT
TTTTTATTGAGacatgaatggaaagtacactcctccataatgctcatttt
ctaaattgctcgccttagacaaattaatcgtctcagtataaatagaacta
ttGAAGAAAGGTCTGACTGAGGAGTCGTTcgaatttaaaagtcaaatgtC
CGAGACTGTCCAAAAGCCCTAGATTACTTGGCCAACCACGTCAAATTACA
CTAAAAATATTGATAGCCGGCCTTGATTAATTGTGTTCGATGTAAAAATT
CTCATCATAATATATTTGAATTTGAGActtcaataaattgaaaaaatgct
ATAAATAAGGattaaaattctcaaattcCTATATAAAAATTCTAcggatt
aaaaaaattatcagttttaaaaacaaaattttttaaaaatttgagcaaaa
ttaTACAATAAAATGAGATTATATCATAAAACTGAGAAAAAGTATAATAT
ATAAAGTATAATGCGGCTTATTTTTCTAAGTAAAATTGTCTATAACTTTG
TGTATATTGGTTtatacgaaaaaaaaaaatcagttttcctggtaacatgt
ttcttttatacaccttttcgaccatcctcttttgacgcatttttctattg
tctattggtGGTAAagaaggactgggacggttttagtgggataaagcgga
cacaAAAAAGCCCGCGCGGCATTTGGTGGccacggtcgaaaaggtgtatt
agagcCTTTCTTTGGGCTGAACTTTAGATGCGCTTATTTTGTGGACAATT
TTAGacctactttaatgggataaattttcaagttaaaatGGAAATCCGGA
AAGATTTTATTCGCGAaatataaaactaaaaaatgtcacataattaattc
tgaaattttgactggcatcaaagaagcgctaataatgcatATTTCAACAA
CCAGTGTGTATAATTTGGCGTAAAAAGATGCAATATCATGAAAGTATTGT
CTCCTGATAATGCCATCCaggaaattaagttcccgcgaaaatttatccca
ttaaagtaaaatGTTCTCTTGGAgtttttgaaattaattcaTTTAAATAT
ACAGAATTACATTGAGTTATAAGGATTGGCCCTCAAGTCGAACAATATTG
GTCTAATTTAAAACAATTACTGCAATTACGAAAGTTTCTTATGAATTCAG
AAAACTTTCAGCAAAATTTGGCTTATCTGTTCAATCATCAGGCTGGCAAT
ATCCTTACGATGGAgcattgtttttttaattaaatctcAGCCTAAATAAT
GGGTTTAAACAAAAAACAGCTTCTATTTTCAAGATTCTTAAACTATTGTA
TTCACTTCCAGTTCTTCTCGAGGGGAAAATCGTTTCTTAGCCTATTTTTA
AGAAGTGTttaaagggctacttagactacacaatatattgacaagcaata
tttgacaatatggttttcggaccgtaatgtgCGAAGTAAATAACAGTAAA
ATTATAANTGCATAGTGCGATCGGGATTTGCATATACATTAACATGCTTT
GTGATCCCGATTCGTGCCCGATATATGTTGTATCCTCTGCTGAGGGAAGc
tctgaaa Run BLAST on NCBI transcript from alignment at scaffold_154:793094..795150 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049344 ID=TCONS_00049344|Name=TCONS_00049344|organism=Clytia hemisphaerica|type=transcript|length=2057bp|location=Sequence derived from alignment at scaffold_154:793094..795150 (Clytia hemisphaerica)
tttcagagCTTCCCTCAGCAGAGGATACAACATATATCGGGCACGAATCG
GGATCACAAAGCATGTTAATGTATATGCAAATCCCGATCGCACTATGCAN
TTATAATTTTACTGTTATTTACTTCGcacattacggtccgaaaaccatat
tgtcaaatattgcttgtcaatatattgtgtagtctaagtagccctttaaA
CACTTCTTAAAAATAGGCTAAGAAACGATTTTCCCCTCGAGAAGAACTGG
AAGTGAATACAATAGTTTAAGAATCTTGAAAATAGAAGCTGTTTTTTGTT
TAAACCCATTATTTAGGCTgagatttaattaaaaaaacaatgcTCCATCG
TAAGGATATTGCCAGCCTGATGATTGAACAGATAAGCCAAATTTTGCTGA
AAGTTTTCTGAATTCATAAGAAACTTTCGTAATTGCAGTAATTGTTTTAA
ATTAGACCAATATTGTTCGACTTGAGGGCCAATCCTTATAACTCAATGTA
ATTCTGTATATTTAAAtgaattaatttcaaaaacTCCAAGAGAACatttt
actttaatgggataaattttcgcgggaacttaatttcctGGATGGCATTA
TCAGGAGACAATACTTTCATGATATTGCATCTTTTTACGCCAAATTATAC
ACACTGGTTGTTGAAATatgcattattagcgcttctttgatgccagtcaa
aatttcagaattaattatgtgacattttttagttttatattTCGCGAATA
AAATCTTTCCGGATTTCCattttaacttgaaaatttatcccattaaagta
ggtCTAAAATTGTCCACAAAATAAGCGCATCTAAAGTTCAGCCCAAAGAA
AGgctctaatacaccttttcgaccgtggCCACCAAATGCCGCGCGGGCTT
TTTtgtgtccgctttatcccactaaaaccgtcccagtccttctTTACCac
caatagacaatagaaaaatgcgtcaaaagaggatggtcgaaaaggtgtat
aaaagaaacatgttaccaggaaaactgatttttttttttcgtataAACCA
ATATACACAAAGTTATAGACAATTTTACTTAGAAAAATAAGCCGCATTAT
ACTTTATATATTATACTTTTTCTCAGTTTTATGATATAATCTCATTTTAT
TGTAtaattttgctcaaatttttaaaaaattttgtttttaaaactgataa
tttttttaatccgTAGAATTTTTATATAGgaatttgagaattttaatCCT
TATTTATagcattttttcaatttattgaagTCTCAAATTCAAATATATTA
TGATGAGAATTTTTACATCGAACACAATTAATCAAGGCCGGCTATCAATA
TTTTTAGTGTAATTTGACGTGGTTGGCCAAGTAATCTAGGGCTTTTGGAC
AGTCTCGGacatttgacttttaaattcgAACGACTCCTCAGTCAGACCTT
TCTTCaatagttctatttatactgagacgattaatttgtctaaggcgagc
aatttagaaaatgagcattatggaggagtgtactttccattcatgtCTCA
ATAAAAAAGATCtcctccacagatcacattttacaaactactcgtctcag
acgatttttccgtctcagtataCTTCTAATacttcaattcatgatattca
tgacgtaatgtttcatacggaagcacccaaaaaagaccGGGTGGTTGTGT
GTAGTATaagcattacgtcatgaatgCCGTGATGTAAAGCGTTGATCATC
TATCAAGAGGAAGCGACAACCCTATTATCAGGGACCTCAAAAAGCCCAAA
TTTTCATTGCAAGTTTTCTGGCCGTTTCTTTTACAATCTTCACTAAAAAT
AGTTAATTCCTTCCTTAAAACagacattttttatttcaaaatactAAATT
TTAATCATAATTTTTTCAGTTGCTTTTTGTTTGCAATTCATAATCTAATA
CTCAAGCATTATTTTAGTATGTAGTAGAACTCATATATTATTTTGTTGGT
ATTATCAATATTTAAATATACTGCTCCCATGGAAATATAGGTGAAGGTAA
TATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049344-exon-scaffold_154-1491911889:793094..795150 | TCONS_00049344-exon-scaffold_154-1491911889:793094..795150 | Clytia hemisphaerica | exon |
| TCONS_00049344-exon-scaffold_154-1510915933:793094..795150 | TCONS_00049344-exon-scaffold_154-1510915933:793094..795150 | Clytia hemisphaerica | exon |
| TCONS_00049344-exon-scaffold_154-1575043694:793094..795150 | TCONS_00049344-exon-scaffold_154-1575043694:793094..795150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:793094..795150 . |
Blast
The following BLAST results are available for this feature:
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