TCONS_00049345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049345
Unique NameTCONS_00049345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049345 ID=TCONS_00049345|Name=TCONS_00049345|organism=Clytia hemisphaerica|type=transcript|length=1842bp
AAATTTTTAAAGCCGTTGCATTTTGACATCATCCAACCAATGTAAACTCG
AACCCAATTCTTTTTTGGGTTATGGTTGATAGGTGCTTTATACTGGTATT
TTATTGTGTGCTCCTATTCAATTTTTTAGATctaccaaaaagaaaaagtt
aagaaaaagaGAACTGAAAATGGATTATGAAATGGAAAATATTGTGAATA
CATCTAGTAATGATAGTTTTTCATCATCAATAAAATTATCATTTGCTATA
AACAACGATGGTAAATTAATTGGTTCTTGTCAAATCACCATCGAAACTTT
CAAGTCTAGATTGGAATTCGTGGATCGTCTTGGGAATAGTTTTTTGTTTA
AGCCAAATGAAAGGAATGAGGAATCCAATTCGAATATCCTGGAGAAGGGA
TGTAAATCAAAAGTGGACGTGCATAAGAACCGTTTAGGATTAGGTGAAGA
AATCCATATTAAAGTAGAGGAGCCATACGAGTTTGATCATTCTTCAACAC
GTGACCATAACAGAATCGAAACCTTTGTTGAAGTTGAACTAGAAGAACAA
ATTGATAATTCTTCTGTGTTGAATAAGGATGAATATGTATATGAAAATGA
CGAGGAACAAACTGGTAAATCATCTTCGTTGCATAGTAAAGATAATAATG
TTAAGAATCCTGAGATGTCAGACCTTGATAATTCAAATAGTAACGTTTTT
GCATGCAACAGCACTGAAAATGAACAGCAAAAAGAAGAGTCTGTGGATTC
GCATAAGTTTGAATGTCAAGTATGTGGTAAATCATTTACATCAAAGTGTT
TTCTTGACAACCATGAAAAAAACCATCGTCGTGAATTTAAATGCAAAGAG
TGTGGTAAAGAATTTACGgccaaaaataaattaaagcGTCATGAAAAACA
GCACAGCGGTGTGAAGCCTTTTGactgtcaagaatgtggtaaaaaattta
atgaaaacaGTAAATTGAAGCGTCATGAAAAACAGCATACGGGTGTGAAG
CCTTttgaatgtcaagaatgtggtaaacgGTTTTTGCGGAAAGATAATTA
TCAAGACCATGTTAAGCTACATTCTGAAGAAAAACCATTCAAATGCACAA
TATGTCATGTTAAATCGTATGTAAGGTATTATGATTTGAAGAGACATATG
GCAAAGCATACAAGTGAAGAATCCTTTCTTTGTGAACTATGTGGTAAGGG
GTTCACACAAGAAAATGAACTCCAGGATCATCTCGCAAGACATTCTATGA
AAAGGCCACACaagtgtcaagaatgtggtaaagaTTTTCCTTATGAATCG
GAATTGAAAAAACACATAGAAGTACACAGTAATATACTTTTTACATGTGA
TGTATGTGGGAAAGCATTTAGCCAGAGCAGTACCCTTAAAGCACACATGA
TCATTCATACTGATGAAAAAGCTTCTGAGTGTAAAGTTTGTGGTAAGGCT
CTTCCtctcaaaaaagccttaacaaaCATATGGAGACACACTGTTTTAAT
AAtgctgaaaaatcaaaagtagcTTCCGGATAATATCTTCGTTCTCGATG
GAAATACATGTTAAGTGAAGCTCAACActtagtgttttgagcactcttgt
gacaatagcagtctatgctcgcttacccaggccgcactgatgagtccctg
ggaaggacgaaacaCGTGTCTTCGGATAAATGTAGAAATACATGTTGCAA
TTATCTATAATTTTGCTACTGTAATTTATAAATGCATgtatgtaaaatac
aaaaccaTCAAGTTCCCATGTGTTTTTGATCAATGCTGGAAGTAAGACAA
TCAAATAAATAACATTCTCAGGTTTCTATGGAAGACCTACCT
Run BLAST on NCBI

protein sequence of TCONS_00049345-protein

>TCONS_00049345-protein ID=TCONS_00049345-protein|Name=TCONS_00049345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MDYEMENIVNTSSNDSFSSSIKLSFAINNDGKLIGSCQITIETFKSRLEF
VDRLGNSFLFKPNERNEESNSNILEKGCKSKVDVHKNRLGLGEEIHIKVE
EPYEFDHSSTRDHNRIETFVEVELEEQIDNSSVLNKDEYVYENDEEQTGK
SSSLHSKDNNVKNPEMSDLDNSNSNVFACNSTENEQQKEESVDSHKFECQ
VCGKSFTSKCFLDNHEKNHRREFKCKECGKEFTAKNKLKRHEKQHSGVKP
FDCQECGKKFNENSKLKRHEKQHTGVKPFECQECGKRFLRKDNYQDHVKL
HSEEKPFKCTICHVKSYVRYYDLKRHMAKHTSEESFLCELCGKGFTQENE
LQDHLARHSMKRPHKCQECGKDFPYESELKKHIEVHSNILFTCDVCGKAF
SQSSTLKAHMIIHTDEKASECKVCGKALPLKKALTNIWRHTVLIMLKNQK
Run BLAST on NCBI

transcript from alignment at scaffold_154:803854..805695

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049345 ID=TCONS_00049345|Name=TCONS_00049345|organism=Clytia hemisphaerica|type=transcript|length=1842bp|location=Sequence derived from alignment at scaffold_154:803854..805695 (Clytia hemisphaerica)
AGGTAGGTCTTCCATAGAAACCTGAGAATGTTATTTATTTGATTGTCTTA
CTTCCAGCATTGATCAAAAACACATGGGAACTTGAtggttttgtatttta
catacATGCATTTATAAATTACAGTAGCAAAATTATAGATAATTGCAACA
TGTATTTCTACATTTATCCGAAGACACGtgtttcgtccttcccagggact
catcagtgcggcctgggtaagcgagcatagactgctattgtcacaagagt
gctcaaaacactaagTGTTGAGCTTCACTTAACATGTATTTCCATCGAGA
ACGAAGATATTATCCGGAAgctacttttgatttttcagcaTTATTAAAAC
AGTGTGTCTCCATATGtttgttaaggcttttttgagaGGAAGAGCCTTAC
CACAAACTTTACACTCAGAAGCTTTTTCATCAGTATGAATGATCATGTGT
GCTTTAAGGGTACTGCTCTGGCTAAATGCTTTCCCACATACATCACATGT
AAAAAGTATATTACTGTGTACTTCTATGTGTTTTTTCAATTCCGATTCAT
AAGGAAAAtctttaccacattcttgacacttGTGTGGCCTTTTCATAGAA
TGTCTTGCGAGATGATCCTGGAGTTCATTTTCTTGTGTGAACCCCTTACC
ACATAGTTCACAAAGAAAGGATTCTTCACTTGTATGCTTTGCCATATGTC
TCTTCAAATCATAATACCTTACATACGATTTAACATGACATATTGTGCAT
TTGAATGGTTTTTCTTCAGAATGTAGCTTAACATGGTCTTGATAATTATC
TTTCCGCAAAAACcgtttaccacattcttgacattcaaAAGGCTTCACAC
CCGTATGCTGTTTTTCATGACGCTTCAATTTACtgttttcattaaatttt
ttaccacattcttgacagtCAAAAGGCTTCACACCGCTGTGCTGTTTTTC
ATGACgctttaatttatttttggcCGTAAATTCTTTACCACACTCTTTGC
ATTTAAATTCACGACGATGGTTTTTTTCATGGTTGTCAAGAAAACACTTT
GATGTAAATGATTTACCACATACTTGACATTCAAACTTATGCGAATCCAC
AGACTCTTCTTTTTGCTGTTCATTTTCAGTGCTGTTGCATGCAAAAACGT
TACTATTTGAATTATCAAGGTCTGACATCTCAGGATTCTTAACATTATTA
TCTTTACTATGCAACGAAGATGATTTACCAGTTTGTTCCTCGTCATTTTC
ATATACATATTCATCCTTATTCAACACAGAAGAATTATCAATTTGTTCTT
CTAGTTCAACTTCAACAAAGGTTTCGATTCTGTTATGGTCACGTGTTGAA
GAATGATCAAACTCGTATGGCTCCTCTACTTTAATATGGATTTCTTCACC
TAATCCTAAACGGTTCTTATGCACGTCCACTTTTGATTTACATCCCTTCT
CCAGGATATTCGAATTGGATTCCTCATTCCTTTCATTTGGCTTAAACAAA
AAACTATTCCCAAGACGATCCACGAATTCCAATCTAGACTTGAAAGTTTC
GATGGTGATTTGACAAGAACCAATTAATTTACCATCGTTGTTTATAGCAA
ATGATAATTTTATTGATGATGAAAAACTATCATTACTAGATGTATTCACA
ATATTTTCCATTTCATAATCCATTTTCAGTTCtctttttcttaacttttt
ctttttggtagATCTAAAAAATTGAATAGGAGCACACAATAAAATACCAG
TATAAAGCACCTATCAACCATAACCCAAAAAAGAATTGGGTTCGAGTTTA
CATTGGTTGGATGATGTCAAAATGCAACGGCTTTAAAAATTT

Coding sequence (CDS) from alignment at scaffold_154:803854..805695

>TCONS_00049345 ID=TCONS_00049345|Name=TCONS_00049345|organism=Clytia hemisphaerica|type=CDS|length=1353bp|location=Sequence derived from alignment at scaffold_154:803854..805695 (Clytia hemisphaerica)
ctacttttgatttttcagcaTTATTAAAACAGTGTGTCTCCATATGtttg
ttaaggcttttttgagaGGAAGAGCCTTACCACAAACTTTACACTCAGAA
GCTTTTTCATCAGTATGAATGATCATGTGTGCTTTAAGGGTACTGCTCTG
GCTAAATGCTTTCCCACATACATCACATGTAAAAAGTATATTACTGTGTA
CTTCTATGTGTTTTTTCAATTCCGATTCATAAGGAAAAtctttaccacat
tcttgacacttGTGTGGCCTTTTCATAGAATGTCTTGCGAGATGATCCTG
GAGTTCATTTTCTTGTGTGAACCCCTTACCACATAGTTCACAAAGAAAGG
ATTCTTCACTTGTATGCTTTGCCATATGTCTCTTCAAATCATAATACCTT
ACATACGATTTAACATGACATATTGTGCATTTGAATGGTTTTTCTTCAGA
ATGTAGCTTAACATGGTCTTGATAATTATCTTTCCGCAAAAACcgtttac
cacattcttgacattcaaAAGGCTTCACACCCGTATGCTGTTTTTCATGA
CGCTTCAATTTACtgttttcattaaattttttaccacattcttgacagtC
AAAAGGCTTCACACCGCTGTGCTGTTTTTCATGACgctttaatttatttt
tggcCGTAAATTCTTTACCACACTCTTTGCATTTAAATTCACGACGATGG
TTTTTTTCATGGTTGTCAAGAAAACACTTTGATGTAAATGATTTACCACA
TACTTGACATTCAAACTTATGCGAATCCACAGACTCTTCTTTTTGCTGTT
CATTTTCAGTGCTGTTGCATGCAAAAACGTTACTATTTGAATTATCAAGG
TCTGACATCTCAGGATTCTTAACATTATTATCTTTACTATGCAACGAAGA
TGATTTACCAGTTTGTTCCTCGTCATTTTCATATACATATTCATCCTTAT
TCAACACAGAAGAATTATCAATTTGTTCTTCTAGTTCAACTTCAACAAAG
GTTTCGATTCTGTTATGGTCACGTGTTGAAGAATGATCAAACTCGTATGG
CTCCTCTACTTTAATATGGATTTCTTCACCTAATCCTAAACGGTTCTTAT
GCACGTCCACTTTTGATTTACATCCCTTCTCCAGGATATTCGAATTGGAT
TCCTCATTCCTTTCATTTGGCTTAAACAAAAAACTATTCCCAAGACGATC
CACGAATTCCAATCTAGACTTGAAAGTTTCGATGGTGATTTGACAAGAAC
CAATTAATTTACCATCGTTGTTTATAGCAAATGATAATTTTATTGATGAT
GAAAAACTATCATTACTAGATGTATTCACAATATTTTCCATTTCATAATC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031316XLOC_031316Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049345-proteinTCONS_00049345-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049345-exon-scaffold_154-1491911889:803854..805695TCONS_00049345-exon-scaffold_154-1491911889:803854..805695Clytia hemisphaericaexon
TCONS_00049345-exon-scaffold_154-1510915933:803854..805695TCONS_00049345-exon-scaffold_154-1510915933:803854..805695Clytia hemisphaericaexon
TCONS_00049345-exon-scaffold_154-1575043694:803854..805695TCONS_00049345-exon-scaffold_154-1575043694:803854..805695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:803854..805695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96171	3.05639	1.2605	1.08687	1.81648	1.85214	2.87695	2.01349	1.80235	1.40235	1.89293	1.47584	1.40155	1.69561	2.52897	3.07814	2.95598	3.97852	1.2099	1.03918	2.62568	2.32267	11.066	7.74218	3.1723	2.9561	1.10223	2.00294	7.42155	6.07585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00049345 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 1.478e-57
Identity = 108/238 (45.38%), Postives = 143/238 (60.08%), Query Frame = 2 
Query:  758 FECQVCGKSFTSKCFLDNHEKNHRRE--FKCKECGKEFTAKNKLKRHEKQHSGVKPFDCQECGKKFNENSKLKRHEKQHTGVKPFECQECGKRFLRKDNYQDHVKLHSEEKPFKCTICHVKSYVRYYDLKRHMAKHTSEESFLCELCGKGFTQENELQDHLARHSMKRPHKCQECGKDFPYESELKKHIEVHSN-ILFTCDVCGKAFSQSSTLKAHMIIHTDEKASECKVCGKALPLK 1462
            FEC  CGK+F+ K ++  H+  H  E  F+C ECGK F+ K  L  H+K H+G KPF+C++CGK F + S L RH++ HTG KPF C+ECGK F  K N  +H K+H  EKPFKC+ C      + Y L +H   HT E+ + C  CGK F+Q   L  H+  HS  +P++C  CGK F   S L  H+  H+    + C+ CGKAFSQ STL  H+ IHT +K  +C  CGKA   K
Sbjct:   44 FECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKY-LIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQK 280

HSP 2 Score: 177.178 bits (448), Expect = 5.074e-50
Identity = 96/221 (43.44%), Postives = 137/221 (61.99%), Query Frame = 2 
Query:  836 FKCKECGKEFTAKNKLKRHEKQHSGVKPFDCQECGKKFNENSKLKRHEKQHTGVKPFECQECGKRFLRKDNYQDHVKLHSEEKPFKCTICHVKSYVRYYDLKRHMAKHTSEESFLCELCGKGFTQENELQDHLARHSMKRPHKCQECGKDFPYESELKKHIEVHSN-ILFTCDVCGKAFSQSSTLKAHMIIHTDEKASECKVCGKALPLKKALT-NIWRHT 1492
            F CK CGK F+ K+ L  HE  H+  KPF+C ECGK F++   + +H+  HTG K FEC ECGK F +K+N   H K+H+ EKPF+C  C  K++++  +L RH   HT E+ F+C+ CGK F+ ++ L +H   H  ++P KC ECG  F  +  L KH  +H+    + C+ CGKAFSQ ++L  H+ IH+ +K  EC VCGKA     +LT ++  HT
Sbjct:   16 FACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDC-GKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHT 235

HSP 3 Score: 173.326 bits (438), Expect = 1.328e-48
Identity = 96/221 (43.44%), Postives = 132/221 (59.73%), Query Frame = 2 
Query:  758 FECQVCGKSFTSKCFLDNHEKNHRRE--FKCKECGKEFTAKNKLKRHEKQHSGVKPFDCQECGKKFNENSKLKRHEKQHTGVKPFECQECGKRFLRKDNYQDHVKLHSEEKPFKCTICHVKSYVRYYDLKRHMAKHTSEESFLCELCGKGFTQENELQDHLARHSMKRPHKCQECGKDFPYESELKKHIEVHSNI-LFTCDVCGKAFSQSSTLKAHMIIHT 1411
            FEC  CGKSF+ K  L  H+K H  E  F+CK+CGK F  K+ L RH++ H+G KPF C+ECGK F+  S L  HEK H G KPF+C ECG  F +K     H  +H+ EKP++C  C  K++ +   L  H+  H+ ++ + C +CGK F+Q + L  H+  H+ ++P+ C ECGK F   S L  H+ +H+    + C  CGKAFSQ S    H  IHT
Sbjct:   72 FECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNEC-GKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIHT 291

HSP 4 Score: 165.236 bits (417), Expect = 8.476e-46
Identity = 89/228 (39.04%), Postives = 135/228 (59.21%), Query Frame = 2 
Query:  680 NSNSNVFACNSTENEQQKEESVDSHK--------FECQVCGKSFTSKCFLDNHEKNHRRE--FKCKECGKEFTAKNKLKRHEKQHSGVKPFDCQECGKKFNENSKLKRHEKQHTGVKPFECQECGKRFLRKDNYQDHVKLHSEEKPFKCTICHVKSYVRYYDLKRHMAKHTSEESFLCELCGKGFTQENELQDHLARHSMKRPHKCQECGKDFPYESELKKHIEVHSN 1333
            ++   +F CN       ++E++ +H+        FEC+ CGK+F  K  L  H++ H  E  F CKECGK F+ K+ L  HEK H G KPF C ECG  F +   L +H+  HTG KP+EC ECGK F ++ +   HV++HS +KP++C +C  K++ +   L  H+  HT E+ + C  CGK F+Q + L  HL  H+ K+P++C ECGK F  +S   +H ++H++
Sbjct:   66 HTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVC-GKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIHTH 292
The following BLAST results are available for this feature:
BLAST of TCONS_00049345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OZF1.478e-5745.38Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 ... [more]
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