TCONS_00049347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049347
Unique NameTCONS_00049347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049347 ID=TCONS_00049347|Name=TCONS_00049347|organism=Clytia hemisphaerica|type=transcript|length=617bp
CTCTTTTTATCTTTAGAACTACAtagaaagaaaaatacaaaaattgaaat
gaattatgAAGTTGGAAATTTGGTTATTACACCAATCAATAATGATGGGT
TTCCAGAACCAATCAAGTTATCATTTGATATCAAAAAGGACGACAAAGTT
GTTGGCTCTTGTCAAATATCCATCCAAACAAAATTATTACAAGTAGACCT
TGTTGATAATCATGGAAATCATTTTTCGTACAATCCaaagaaagagaaag
agaaagaatTCGAGAATTGTAatgcttttaaattgaaatctAATATGGGA
ACAAATCATTACCTACTTATTGTCTCTgtaatcttttttttccttcttta
gatctaagtaaaaaataattctaaaatgaATTATGAAATaggaaatttgg
tcaatttatCAAACATCAATAGACTATCAGCACCAATGTGTATATCATTT
GATCTCAAAAATGGCGATGAAGTTGTTGGTACTTGCCAATTCACAATGGA
AAATGTCTTCTTACAAGTAGAGTTGGTTGATGACCATggaaatcattttt
catttaaaccTGGTAAAGCACTGAAAACggggaaagaaagaaaattttgc
tcAAACGAACAAGAACT
Run BLAST on NCBI

protein sequence of TCONS_00049347-protein

>TCONS_00049347-protein ID=TCONS_00049347-protein|Name=TCONS_00049347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
LFLSLELHRKKNTKIEMNYEVGNLVITPINNDGFPEPIKLSFDIKKDDKV
VGSCQISIQTKLLQVDLVDNHGNHFSYNPKKEKEKEFENCNAFKLKSNMG
TNHYLLIVSVIFFFLL
Run BLAST on NCBI

transcript from alignment at scaffold_154:809940..810556

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049347 ID=TCONS_00049347|Name=TCONS_00049347|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at scaffold_154:809940..810556 (Clytia hemisphaerica)
AGTTCTTGTTCGTTTgagcaaaattttctttctttccccGTTTTCAGTGC
TTTACCAggtttaaatgaaaaatgatttccATGGTCATCAACCAACTCTA
CTTGTAAGAAGACATTTTCCATTGTGAATTGGCAAGTACCAACAACTTCA
TCGCCATTTTTGAGATCAAATGATATACACATTGGTGCTGATAGTCTATT
GATGTTTGataaattgaccaaatttcctATTTCATAATtcattttagaat
tattttttacttagatctaaagaaggaaaaaaaagattacAGAGACAATA
AGTAGGTAATGATTTGTTCCCATATTagatttcaatttaaaagcatTACA
ATTCTCGAattctttctctttctctttctttGGATTGTACGAAAAATGAT
TTCCATGATTATCAACAAGGTCTACTTGTAATAATTTTGTTTGGATGGAT
ATTTGACAAGAGCCAACAACTTTGTCGTCCTTTTTGATATCAAATGATAA
CTTGATTGGTTCTGGAAACCCATCATTATTGATTGGTGTAATAACCAAAT
TTCCAACTTcataattcatttcaatttttgtatttttctttctaTGTAGT
TCTAAAGATAAAAAGAG

Coding sequence (CDS) from alignment at scaffold_154:809940..810556

>TCONS_00049347 ID=TCONS_00049347|Name=TCONS_00049347|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_154:809940..810556 (Clytia hemisphaerica)
ctaaagaaggaaaaaaaagattacAGAGACAATAAGTAGGTAATGATTTG
TTCCCATATTagatttcaatttaaaagcatTACAATTCTCGAattctttc
tctttctctttctttGGATTGTACGAAAAATGATTTCCATGATTATCAAC
AAGGTCTACTTGTAATAATTTTGTTTGGATGGATATTTGACAAGAGCCAA
CAACTTTGTCGTCCTTTTTGATATCAAATGATAACTTGATTGGTTCTGGA
AACCCATCATTATTGATTGGTGTAATAACCAAATTTCCAACTTcataatt
catttcaatttttgtatttttctttctaTGTAGTTCTAAAGATAAAAAGA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031318XLOC_031318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049347-exon-scaffold_154-1491911889:809940..810556TCONS_00049347-exon-scaffold_154-1491911889:809940..810556Clytia hemisphaericaexon
TCONS_00049347-exon-scaffold_154-1510915933:809940..810556TCONS_00049347-exon-scaffold_154-1510915933:809940..810556Clytia hemisphaericaexon
TCONS_00049347-exon-scaffold_154-1575043694:809940..810556TCONS_00049347-exon-scaffold_154-1575043694:809940..810556Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049347-proteinTCONS_00049347-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:809940..810556 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.78208	6.82597	2.48002	0.904355	1.70166	0.648645	1.13662	1.36059	0.648951	0.466985	1.14527	0.444682	0.404818	0.780758	0.366739	0.647076	0.587493	0.677328	0.554612	0	1.11617	0.861168	6.18819	6.3669	0.4668	1.24982	0.8649	0.794491	3.94994	3.75257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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