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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049352 ID=TCONS_00049352|Name=TCONS_00049352|organism=Clytia hemisphaerica|type=transcript|length=1081bp
CCACCATTTCTTCAAGTGTTTGATCAGCATCAGGTAACATGTATCCATTA
TCAAAAAACTCAACAAACGCACCTCCATAATCCGAACTAAACCCCATTTC
CTCGATTTCATTTTGAGACACATTTCTACGTCGGAAATATTCAGCTCCAA
CAATCTCATCCATGATTTTGTATATAAGATCAGCTTCGTTGTGACCCCCT
TCGAAATACATAAGGCTCTTTGCTTTATCATTTGATTTCAAACAAATATC
TTTACCAGGGTTCAATGTTTTTAGGATGTCATATCCGGCCAGTGCATGCG
GGATAAGATACTTGCTGATAGAGTAAGAAGCTGTTGGTAGTTTAAAACGA
CTTTCGATACCGAAAAGAGTTCCTATATCTTTAATCGATGCAAGCTGATT
GGATAGCACAAATTTCAAAGCAGTAAAAGGATACCGTGTAACAGCTGGAA
AGTCAATTAATAATCGAGTATAATGAGGCGaagattttacatatttttga
aTGTAGGAATCCATGCCTTGAGCTTGTAGGAAATATCTTCGAAAACTGTG
ATAGAATGCGTGGACAACTGTTTTGTCCTTATTATAGTAGATTGGTACCG
CTTCATTCATATGGATATAGGATGCTGATCCCTTCCAATTTGACGCACCT
CTGTAGCCGTCATGTATGTAGAGGACGTTCTTGGCTTCCGGTGATTTGCT
TTGAATGGAAGCACCACATAATGCAGCAGGACCTCCAATATAGACATCAT
ATTTTTCTTCGTGTGATAAAAGCGTTGGTCCTTCATCAATTTCAATTGCC
ACCGTATTGTTTTCAAGCTGTCTCATAGCTTCAGGTGTAGATCGACCTAA
GTCGTTGGCGGTGGCAACCTCAGGGAAAATTTCCTGGTAAAACGATATCA
CATTGTCCGGTGCTGAGACAATTTCTGTCacgttttttcttgattttatt
aACTCTTCGAGTTGTTGAGTAACATGTTTCCCTTGTTGCAAAGGTGTGAC
TTCTGTGGATTTCAAATGAAGAATTCCATGATGGAGAGGGTCGTCCAGGT
CTTTCTGTGATGGTGATTCCATTTTctgtta Run BLAST on NCBI protein sequence of TCONS_00049352-protein >TCONS_00049352-protein ID=TCONS_00049352-protein|Name=TCONS_00049352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MESPSQKDLDDPLHHGILHLKSTEVTPLQQGKHVTQQLEELIKSRKNVTE
IVSAPDNVISFYQEIFPEVATANDLGRSTPEAMRQLENNTVAIEIDEGPT
LLSHEEKYDVYIGGPAALCGASIQSKSPEAKNVLYIHDGYRGASNWKGSA
SYIHMNEAVPIYYNKDKTVVHAFYHSFRRYFLQAQGMDSYIQKYVKSSPH
YTRLLIDFPAVTRYPFTALKFVLSNQLASIKDIGTLFGIESRFKLPTASY
SISKYLIPHALAGYDILKTLNPGKDICLKSNDKAKSLMYFEGGHNEADLI
YKIMDEIVGAEYFRRRNVSQNEIEEMGFSSDYGGAFVEFFDNGYMLPDAD
QTLEEMV Run BLAST on NCBI transcript from alignment at scaffold_154:863611..864691 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049352 ID=TCONS_00049352|Name=TCONS_00049352|organism=Clytia hemisphaerica|type=transcript|length=1081bp|location=Sequence derived from alignment at scaffold_154:863611..864691 (Clytia hemisphaerica)
taacagAAAATGGAATCACCATCACAGAAAGACCTGGACGACCCTCTCCA
TCATGGAATTCTTCATTTGAAATCCACAGAAGTCACACCTTTGCAACAAG
GGAAACATGTTACTCAACAACTCGAAGAGTtaataaaatcaagaaaaaac
gtGACAGAAATTGTCTCAGCACCGGACAATGTGATATCGTTTTACCAGGA
AATTTTCCCTGAGGTTGCCACCGCCAACGACTTAGGTCGATCTACACCTG
AAGCTATGAGACAGCTTGAAAACAATACGGTGGCAATTGAAATTGATGAA
GGACCAACGCTTTTATCACACGAAGAAAAATATGATGTCTATATTGGAGG
TCCTGCTGCATTATGTGGTGCTTCCATTCAAAGCAAATCACCGGAAGCCA
AGAACGTCCTCTACATACATGACGGCTACAGAGGTGCGTCAAATTGGAAG
GGATCAGCATCCTATATCCATATGAATGAAGCGGTACCAATCTACTATAA
TAAGGACAAAACAGTTGTCCACGCATTCTATCACAGTTTTCGAAGATATT
TCCTACAAGCTCAAGGCATGGATTCCTACAttcaaaaatatgtaaaatct
tCGCCTCATTATACTCGATTATTAATTGACTTTCCAGCTGTTACACGGTA
TCCTTTTACTGCTTTGAAATTTGTGCTATCCAATCAGCTTGCATCGATTA
AAGATATAGGAACTCTTTTCGGTATCGAAAGTCGTTTTAAACTACCAACA
GCTTCTTACTCTATCAGCAAGTATCTTATCCCGCATGCACTGGCCGGATA
TGACATCCTAAAAACATTGAACCCTGGTAAAGATATTTGTTTGAAATCAA
ATGATAAAGCAAAGAGCCTTATGTATTTCGAAGGGGGTCACAACGAAGCT
GATCTTATATACAAAATCATGGATGAGATTGTTGGAGCTGAATATTTCCG
ACGTAGAAATGTGTCTCAAAATGAAATCGAGGAAATGGGGTTTAGTTCGG
ATTATGGAGGTGCGTTTGTTGAGTTTTTTGATAATGGATACATGTTACCT
GATGCTGATCAAACACTTGAAGAAATGGTGG Coding sequence (CDS) from alignment at scaffold_154:863611..864691 >TCONS_00049352 ID=TCONS_00049352|Name=TCONS_00049352|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_154:863611..864691 (Clytia hemisphaerica)
ATGGAATCACCATCACAGAAAGACCTGGACGACCCTCTCCATCATGGAAT
TCTTCATTTGAAATCCACAGAAGTCACACCTTTGCAACAAGGGAAACATG
TTACTCAACAACTCGAAGAGTtaataaaatcaagaaaaaacgtGACAGAA
ATTGTCTCAGCACCGGACAATGTGATATCGTTTTACCAGGAAATTTTCCC
TGAGGTTGCCACCGCCAACGACTTAGGTCGATCTACACCTGAAGCTATGA
GACAGCTTGAAAACAATACGGTGGCAATTGAAATTGATGAAGGACCAACG
CTTTTATCACACGAAGAAAAATATGATGTCTATATTGGAGGTCCTGCTGC
ATTATGTGGTGCTTCCATTCAAAGCAAATCACCGGAAGCCAAGAACGTCC
TCTACATACATGACGGCTACAGAGGTGCGTCAAATTGGAAGGGATCAGCA
TCCTATATCCATATGAATGAAGCGGTACCAATCTACTATAATAAGGACAA
AACAGTTGTCCACGCATTCTATCACAGTTTTCGAAGATATTTCCTACAAG
CTCAAGGCATGGATTCCTACAttcaaaaatatgtaaaatcttCGCCTCAT
TATACTCGATTATTAATTGACTTTCCAGCTGTTACACGGTATCCTTTTAC
TGCTTTGAAATTTGTGCTATCCAATCAGCTTGCATCGATTAAAGATATAG
GAACTCTTTTCGGTATCGAAAGTCGTTTTAAACTACCAACAGCTTCTTAC
TCTATCAGCAAGTATCTTATCCCGCATGCACTGGCCGGATATGACATCCT
AAAAACATTGAACCCTGGTAAAGATATTTGTTTGAAATCAAATGATAAAG
CAAAGAGCCTTATGTATTTCGAAGGGGGTCACAACGAAGCTGATCTTATA
TACAAAATCATGGATGAGATTGTTGGAGCTGAATATTTCCGACGTAGAAA
TGTGTCTCAAAATGAAATCGAGGAAATGGGGTTTAGTTCGGATTATGGAG
GTGCGTTTGTTGAGTTTTTTGATAATGGATACATGTTACCTGATGCTGAT
CAAACACTTGAAGAAATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049352-exon-scaffold_154-1491911889:863611..864691 | TCONS_00049352-exon-scaffold_154-1491911889:863611..864691 | Clytia hemisphaerica | exon |
| TCONS_00049352-exon-scaffold_154-1510915933:863611..864691 | TCONS_00049352-exon-scaffold_154-1510915933:863611..864691 | Clytia hemisphaerica | exon |
| TCONS_00049352-exon-scaffold_154-1575043694:863611..864691 | TCONS_00049352-exon-scaffold_154-1575043694:863611..864691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:863611..864691 . |
Blast
The following BLAST results are available for this feature:
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