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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049357 ID=TCONS_00049357|Name=TCONS_00049357|organism=Clytia hemisphaerica|type=transcript|length=593bp
GGAAAAACAAACTTGACAAGATCAGAGAGAAAGAATCGAAGCGTGACAAA
AAGATTGAAGTGCAAAAGCCACAAACAGACATAATCTCAACAGAGAAGAT
GGCCAACGTCAACTCGTTTGTGTTCAAGAAAGTAAATTTGGGCTTACCTG
TGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGA
CAAGATTTCGTGAAGAACACGTCCGCCACCACATCCAAATCGGCTGACAA
AACAACTTCAAACGACTGTGACTTTACGGTAAAACCAGTTGACCGAGACA
GTTCGACAATAACTTTGACAATTGCGCAAAACCAGGACAAAATCACAATA
GATACTGACGACGTTACGATGGTTACTGATGACCATAAAATAAATGACTC
AACAAATACTGATTACATAAATACAAATGACGCTATCCAACCGGACAAAG
TGACAAATCCTGACAATGTCGACACAAGTACAGGGATAGGGTTGCTCCGT
GATGACCATTCAACTGACGAAACGGTCACCAAAGACGCCACAGCTGACGA
AACTGTTACCAAAGACGCCACAGCTGACGAAACTGTTACCAAA Run BLAST on NCBI protein sequence of TCONS_00049357-protein >TCONS_00049357-protein ID=TCONS_00049357-protein|Name=TCONS_00049357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
KNKLDKIREKESKRDKKIEVQKPQTDIISTEKMANVNSFVFKKVNLGLPV
AKPKSSGFSVVCTEKRQDFVKNTSATTSKSADKTTSNDCDFTVKPVDRDS
STITLTIAQNQDKITIDTDDVTMVTDDHKINDSTNTDYINTNDAIQPDKV
TNPDNVDTSTGIGLLRDDHSTDETVTKDATADETVTKDATADETVTK Run BLAST on NCBI transcript from alignment at scaffold_155:110733..112262+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049357 ID=TCONS_00049357|Name=TCONS_00049357|organism=Clytia hemisphaerica|type=transcript|length=1530bp|location=Sequence derived from alignment at scaffold_155:110733..112262+ (Clytia hemisphaerica)
GGAAAAACAAACTTGACAAGATCAGAGAGAAAGAATCGAAGCGTGACAAA
AAGATTGAAGTGCAAAAGGTATGTCTTTTATAAAGAGTTTGTTGATACTT
TCCATGAATATGTCAAAAAACtgttactttaatcgtagaaattttagcca
gactaattttagcatatattagcgagtcgggaaaatcttgattttttttg
gattttagcgaatcatgatttcaaaaaatttcgcgtggataaattttagc
gaatattcGTATTGAATTATCGACTGAATttgttttctagcatttctttg
cacttaaatccttcctattgataaaaatgtatcaaggcaacaTAACCAGA
AATTCCGCGCAGATAAATTTGATTTATCTTgatttattttagcaaaaata
gggaaaaatcagtctcgctaaaatttctacgattaaagtaatccTTCCAA
ggacaaaaatttaatttgagagaagaaattttggcaaataaGCCCATTgc
caattttggtgcaatttggacagaaatttggtgatttcataaaatttctt
aAACTTAGTgataattaattttagcgaacaacacaatttcaatatttatg
gCTGAAGAAAGAGGAAATAAATAGTTTTAGGAGAACAGAGActgaattga
aagaaaattacatCTGTTTGTTAATTTGATTTTCCAATGctgactttttt
tatttttattccgcCGCATAACTAGAGAAATGGAAAATATCGTAAATATT
TAAATGCTCTTGACTAATGAAAACGCTGgtattttttggaataaaaaatg
agataaaatttgggGAGAACTTATTGGGCATTggtgaaatatttaatttt
gggcaaattttgtcaaactttccaataaaaattCTAACCAAAAAGGTTCG
CTTAATGTAAATTTTCAGACTTTCCAATTAGTGAAGAATTTGGTAACACC
TAAGGTATTTGGGAAATTTGAGAATgatattgaaatttgattttttcctt
tgtAGCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTCAAC
TCGTTTGTGTTCAAGAAAGTAAATTTGGGCTTACCTGTGGCAAAACCAAA
GTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAGATTTCGTGA
AGAACACGTCCGCCACCACATCCAAATCGGCTGACAAAACAACTTCAAAC
GACTGTGACTTTACGGTAAAACCAGTTGACCGAGACAGTTCGACAATAAC
TTTGACAATTGCGCAAAACCAGGACAAAATCACAATAGATACTGACGACG
TTACGATGGTTACTGATGACCATAAAATAAATGACTCAACAAATACTGAT
TACATAAATACAAATGACGCTATCCAACCGGACAAAGTGACAAATCCTGA
CAATGTCGACACAAGTACAGGGATAGGGTTGCTCCGTGATGACCATTCAA
CTGACGAAACGGTCACCAAAGACGCCACAGCTGACGAAACTGTTACCAAA
GACGCCACAGCTGACGAAACTGTTACCAAA Coding sequence (CDS) from alignment at scaffold_155:110733..112262+ >TCONS_00049357 ID=TCONS_00049357|Name=TCONS_00049357|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_155:110733..112262+ (Clytia hemisphaerica)
AAAAACAAACTTGACAAGATCAGAGAGAAAGAATCGAAGCGTGACAAAAA
GATTGAAGTGCAAAAGCCACAAACAGACATAATCTCAACAGAGAAGATGG
CCAACGTCAACTCGTTTGTGTTCAAGAAAGTAAATTTGGGCTTACCTGTG
GCAAAACCAAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACA
AGATTTCGTGAAGAACACGTCCGCCACCACATCCAAATCGGCTGACAAAA
CAACTTCAAACGACTGTGACTTTACGGTAAAACCAGTTGACCGAGACAGT
TCGACAATAACTTTGACAATTGCGCAAAACCAGGACAAAATCACAATAGA
TACTGACGACGTTACGATGGTTACTGATGACCATAAAATAAATGACTCAA
CAAATACTGATTACATAAATACAAATGACGCTATCCAACCGGACAAAGTG
ACAAATCCTGACAATGTCGACACAAGTACAGGGATAGGGTTGCTCCGTGA
TGACCATTCAACTGACGAAACGGTCACCAAAGACGCCACAGCTGACGAAA
CTGTTACCAAAGACGCCACAGCTGACGAAACTGTTACCAAAAAAAACAAA
CTTGACAAGATCAGAGAGAAAGAATCGAAGCGTGACAAAAAGATTGAAGT
GCAAAAGCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTCA
ACTCGTTTGTGTTCAAGAAAGTAAATTTGGGCTTACCTGTGGCAAAACCA
AAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAGATTTCGT
GAAGAACACGTCCGCCACCACATCCAAATCGGCTGACAAAACAACTTCAA
ACGACTGTGACTTTACGGTAAAACCAGTTGACCGAGACAGTTCGACAATA
ACTTTGACAATTGCGCAAAACCAGGACAAAATCACAATAGATACTGACGA
CGTTACGATGGTTACTGATGACCATAAAATAAATGACTCAACAAATACTG
ATTACATAAATACAAATGACGCTATCCAACCGGACAAAGTGACAAATCCT
GACAATGTCGACACAAGTACAGGGATAGGGTTGCTCCGTGATGACCATTC
AACTGACGAAACGGTCACCAAAGACGCCACAGCTGACGAAACTGTTACCA
AAGACGCCACAGCTGACGAAACTGTTACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049357-exon-scaffold_155-1491911889:110733..110800 | TCONS_00049357-exon-scaffold_155-1491911889:110733..110800 | Clytia hemisphaerica | exon |
| TCONS_00049357-exon-scaffold_155-1510915933:110733..110800 | TCONS_00049357-exon-scaffold_155-1510915933:110733..110800 | Clytia hemisphaerica | exon |
| TCONS_00049357-exon-scaffold_155-1575043694:110733..110800 | TCONS_00049357-exon-scaffold_155-1575043694:110733..110800 | Clytia hemisphaerica | exon |
| TCONS_00049357-exon-scaffold_155-1491911889:111738..112262 | TCONS_00049357-exon-scaffold_155-1491911889:111738..112262 | Clytia hemisphaerica | exon |
| TCONS_00049357-exon-scaffold_155-1510915933:111738..112262 | TCONS_00049357-exon-scaffold_155-1510915933:111738..112262 | Clytia hemisphaerica | exon |
| TCONS_00049357-exon-scaffold_155-1575043694:111738..112262 | TCONS_00049357-exon-scaffold_155-1575043694:111738..112262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_155 | supercontig | scaffold_155:110733..112262 + |
Blast
The following BLAST results are available for this feature:
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