TCONS_00049360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049360
Unique NameTCONS_00049360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049360 ID=TCONS_00049360|Name=TCONS_00049360|organism=Clytia hemisphaerica|type=transcript|length=205bp
TGACCACTCACTCCAAAAAAGTCACAGCGCAAATTCTGAGGTTAAAATCT
AAGATTACTCAACTTCTAACCATAAAATTGCTCGAAAGTAGGCAATGCGA
AATCTCAGTATTTAGTAAAATGTGCTAGGTCACTCTGGCTATCCTTTCGT
GTTAGCCTCACATCCATGTATTCCCGGGCTATTTTCACCGAACTCTAAAA
TCTAG
Run BLAST on NCBI

transcript from alignment at scaffold_155:21152..21420-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049360 ID=TCONS_00049360|Name=TCONS_00049360|organism=Clytia hemisphaerica|type=transcript|length=269bp|location=Sequence derived from alignment at scaffold_155:21152..21420- (Clytia hemisphaerica)
TGACCACTCACTCCAAAAAAGTCACAGCGCAAATTCTGAGGTTAAAATCT
ATGATTACTCAACTTCTAACCATAAAATTGCTCGAAAGTAGGCNAAATTC
TGAGGTTAAAATCTAAGATTACTCAACTTCTAACCATAAAATTGCTCGAA
AGTAGGCAATGCGAAATCTCAGTATTTAGTAAAATGTGCTAGGTCACTCT
GGCTATCCTTTCGTGTTAGCCTCACATCCATGTATTCCCGGGCTATTTTC
ACCGAACTCTAAAATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031331XLOC_031331Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049360-exon-scaffold_155-1575043694:21381..21420TCONS_00049360-exon-scaffold_155-1575043694:21381..21420Clytia hemisphaericaexon
TCONS_00049360-exon-scaffold_155-1575043694:21152..21316TCONS_00049360-exon-scaffold_155-1575043694:21152..21316Clytia hemisphaericaexon
TCONS_00049360-exon-scaffold_155-1510915933:21381..21420TCONS_00049360-exon-scaffold_155-1510915933:21381..21420Clytia hemisphaericaexon
TCONS_00049360-exon-scaffold_155-1510915933:21152..21316TCONS_00049360-exon-scaffold_155-1510915933:21152..21316Clytia hemisphaericaexon
TCONS_00049360-exon-scaffold_155-1491911889:21381..21420TCONS_00049360-exon-scaffold_155-1491911889:21381..21420Clytia hemisphaericaexon
TCONS_00049360-exon-scaffold_155-1491911889:21152..21316TCONS_00049360-exon-scaffold_155-1491911889:21152..21316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:21152..21420 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.18318	0	1.99403	0	0	3.23782	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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